Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.07G153400 Carya illinoinensis HOM05D005790 ORTHO05D007464 1.2e-227 792.7 389 100.0
Cfa013914 Carpinus fangiana HOM05D005790 ORTHO05D007464 1.6e-190 669.5 389 83.3
QL02p010842 Quercus lobata HOM05D005790 ORTHO05D007464 4.7e-174 614.8 455 69.9
Dinv31817 Davidia involucrata HOM05D005790 ORTHO05D007464 4.1e-170 601.7 388 74.7
Haze_22599 Corylus avellana HOM05D005790 ORTHO05D007464 1.6e-166 589.7 499 62.9
Potri.009G002100 Populus trichocarpa HOM05D005790 ORTHO05D007464 1.5e-164 583.2 389 74.0
GSVIVG01009836001 Vitis vinifera HOM05D005790 ORTHO05D007464 2.0e-164 582.8 386 72.5
Prupe.1G369900 Prunus persica HOM05D005790 ORTHO05D007464 4.8e-163 578.2 392 72.7
Actinidia37976 Actinidia chinensis HOM05D005790 ORTHO05D007464 6.5e-160 567.8 388 71.6
CANSAT01G0079 Cannabis sativa HOM05D005790 ORTHO05D007464 5.5e-159 564.7 388 71.4
RcHm_v2.0_Chr6g0272131 Rosa chinensis HOM05D005790 ORTHO05D007464 7.2e-159 564.3 387 71.8
TAR381G1687 Trochodendron aralioides HOM05D005790 ORTHO05D007464 2.1e-158 562.8 406 68.7
CSS0050056 Camellia sinensis var. sinensis HOM05D005790 ORTHO05D007464 3.6e-158 562.0 388 70.6
Manes.13G125500 Manihot esculenta HOM05D005790 ORTHO05D007464 6.1e-158 561.2 396 70.7
MD15G1016100 Malus domestica HOM05D005790 ORTHO05D007464 2.6e-156 555.8 389 69.9
FvH4_2g39120 Fragaria vesca HOM05D005790 ORTHO05D007464 2.2e-155 552.7 389 69.9
PGR031G1208 Punica granatum HOM05D005790 ORTHO05D007464 1.4e-154 550.1 390 70.3
COL.COLO4_26188 Corchorus olitorius HOM05D005790 ORTHO05D007464 1.2e-153 547.0 396 69.4
Ciclev10008674m.g Citrus clementina HOM05D005790 ORTHO05D007464 2.0e-153 546.2 392 70.4
Lj1g0012079 Lotus japonicus HOM05D005790 ORTHO05D007464 3.5e-153 545.4 391 68.8
FAN20G0385 Fragaria x ananassa HOM05D005790 ORTHO05D007464 1.5e-151 540.0 392 68.4
Glyma.06G026400 Glycine max HOM05D005790 ORTHO05D007464 2.5e-151 539.3 387 68.7
Sp7g27670 Schrenkiella parvula HOM05D005790 ORTHO05D007464 7.2e-151 537.7 387 66.9
Gohir.A06G005800 Gossypium hirsutum HOM05D005790 ORTHO05D007464 9.5e-151 537.3 396 67.9
MD08G1017100 Malus domestica HOM05D005790 ORTHO05D007464 9.5e-151 537.3 413 65.4
vmacro21704 Vaccinium macrocarpon HOM05D005790 ORTHO05D007464 1.2e-150 537.0 399 66.9
AL7G22390 Arabidopsis lyrata HOM05D005790 ORTHO05D007464 2.1e-150 536.2 386 66.8
Gorai.010G006000 Gossypium raimondii HOM05D005790 ORTHO05D007464 3.0e-149 532.3 396 67.4
MELO3C024652.2 Cucumis melo HOM05D005790 ORTHO05D007464 8.9e-149 530.8 390 68.7
CsaV3_1G045470 Cucumis sativus L. HOM05D005790 ORTHO05D007464 1.2e-148 530.4 390 68.5
CARHR237760 Cardamine hirsuta HOM05D005790 ORTHO05D007464 2.0e-148 529.6 388 66.8
Carub.0004s1477 Capsella rubella HOM05D005790 ORTHO05D007464 2.6e-148 529.3 387 66.7
Gohir.D06G001600 Gossypium hirsutum HOM05D005790 ORTHO05D007464 2.6e-148 529.3 396 67.2
Eucgr.J01034 Eucalyptus grandis HOM05D005790 ORTHO05D007464 4.4e-148 528.5 389 68.9
Thhalv10025433m.g Eutrema salsugineum HOM05D005790 ORTHO05D007464 4.4e-148 528.5 387 65.6
FAN15G2431 Fragaria x ananassa HOM05D005790 ORTHO05D007464 4.4e-148 528.5 426 63.1
TWI36G0257 Tripterygium wilfordii HOM05D005790 ORTHO05D007464 5.7e-148 528.1 406 65.5
AT4G29860 Arabidopsis thaliana HOM05D005790 ORTHO05D007464 3.7e-147 525.4 387 66.7
ClCG05G018560 Citrullus lanatus HOM05D005790 ORTHO05D007464 4.9e-147 525.0 418 65.1
FAN20G1847 Fragaria x ananassa HOM05D005790 ORTHO05D007464 6.3e-147 524.6 421 63.7
Lalb_Chr08g0246071 Lupinus albus HOM05D005790 ORTHO05D007464 1.8e-146 523.1 389 66.6
Sed0009865 Sechium edule HOM05D005790 ORTHO05D007464 4.1e-146 521.9 391 67.3
PSO675G3524 Papaver somniferum HOM05D005790 ORTHO05D007464 7.0e-146 521.2 396 65.7
BraA01t00778Z Brassica rapa HOM05D005790 ORTHO05D007464 9.2e-146 520.8 387 66.7
PGSC0003DMG400016117 Solanum tuberosum HOM05D005790 ORTHO05D007464 1.2e-145 520.4 390 64.1
Sopen11g005650 Solanum pennellii HOM05D005790 ORTHO05D007464 1.6e-145 520.0 391 64.7
VMungo1309G1814 Vigna mungo HOM05D005790 ORTHO05D007464 1.6e-145 520.0 387 66.9
Phvul.009G014700 Phaseolus vulgaris HOM05D005790 ORTHO05D007464 2.7e-145 519.2 389 66.6
Solyc11g010910.3 Solanum lycopersicum HOM05D005790 ORTHO05D007464 2.7e-145 519.2 391 64.7
A01p08300 Brassica napus HOM05D005790 ORTHO05D007464 4.5e-145 518.5 387 66.1
Lsat_1_v5_gn_1_16241 Lactuca sativa HOM05D005790 ORTHO05D007464 4.5e-145 518.5 385 66.5
Rhsim06G0026000 Rhododendron simsii HOM05D005790 ORTHO05D007464 4.5e-145 518.5 471 57.1
AUR62019151 Chenopodium quinoa HOM05D005790 ORTHO05D007464 2.3e-144 516.2 385 63.9
Cc10_g02010 Coffea canephora HOM05D005790 ORTHO05D007464 2.9e-144 515.8 394 66.0
Aqoxy2G03135 Aquilegia oxysepala HOM05D005790 ORTHO05D007464 6.6e-144 514.6 383 66.3
arahy.Tifrunner.gnm1.ann1.S6ZM1I Arachis hypogaea HOM05D005790 ORTHO05D007464 6.6e-144 514.6 391 66.2
arahy.Tifrunner.gnm1.ann1.BXK9RQ Arachis hypogaea HOM05D005790 ORTHO05D007464 1.9e-143 513.1 391 65.7
PSO541G0736 Papaver somniferum HOM05D005790 ORTHO05D007464 3.3e-143 512.3 387 66.4
C01p09340 Brassica napus HOM05D005790 ORTHO05D007464 5.6e-143 511.5 389 65.0
BolC1t00922H Brassica oleracea HOM05D005790 ORTHO05D007464 5.6e-143 511.5 389 65.0
AUR62014415 Chenopodium quinoa HOM05D005790 ORTHO05D007464 5.6e-143 511.5 405 61.2
ECA247G0379 Erigeron canadensis HOM05D005790 ORTHO05D007464 7.3e-143 511.1 388 64.9
Ca_02056_v3 Cicer arietinum L. HOM05D005790 ORTHO05D007464 9.5e-143 510.8 389 65.8
CSS0048998 Camellia sinensis var. sinensis HOM05D005790 ORTHO05D007464 1.2e-142 510.4 357 69.7
Medtr3g113190 Medicago truncatula HOM05D005790 ORTHO05D007464 2.1e-142 509.6 389 65.3
EL10Ac1g00445 Beta vulgaris HOM05D005790 ORTHO05D007464 4.7e-142 508.4 386 63.7
Sc02g0005160 Simmondsia chinensis HOM05D005790 ORTHO05D007464 1.4e-138 496.9 390 63.8
Duzib093G0196 Durio zibethinus HOM05D005790 ORTHO05D007464 3.2e-138 495.7 363 68.6
MSTRG.18414 Avicennia marina HOM05D005790 ORTHO05D007464 7.0e-138 494.6 390 62.6
Thecc.08G038500 Theobroma cacao HOM05D005790 ORTHO05D007464 2.3e-136 489.6 392 65.3
Nn5g29250 Nelumbo nucifera HOM05D005790 ORTHO05D007464 2.5e-135 486.1 373 64.9
DCAR_017500 Daucus carota HOM05D005790 ORTHO05D007464 1.8e-133 479.9 389 63.2
Peaxi162Scf00085g00528 Petunia axillaris HOM05D005790 ORTHO05D007464 4.9e-131 471.9 391 59.8
HanXRQChr02g0043921 Helianthus annuus HOM05D005790 ORTHO05D007464 1.4e-130 470.3 367 64.9
Sabra09G0000400 Salix brachista HOM05D005790 ORTHO05D007464 1.1e-127 460.7 505 51.7
THA.LOC104811397 Tarenaya hassleriana HOM05D005790 ORTHO05D007464 1.1e-127 460.7 390 61.0
Zm00001eb378230 Zea mays HOM05D005790 ORTHO05D007464 6.2e-126 454.9 391 57.0
ATR0945G002 Amborella trichopoda HOM05D005790 ORTHO05D007464 3.4e-124 449.1 403 57.1
SGA_v2.0_scaffold8G04609 Striga asiatica HOM05D005790 ORTHO05D007464 7.6e-124 448.0 389 59.1
SHI02412 Sapria himalayana HOM05D005790 ORTHO05D007464 4.1e-122 442.2 393 58.0
Atru.BG.234.p Acer truncatum HOM05D005790 ORTHO05D007464 3.9e-120 435.6 386 60.4
Os06g0131100 Oryza sativa ssp. japonica HOM05D005790 ORTHO05D007464 5.1e-120 435.3 386 55.2
Migut.D00577 Erythranthe guttata HOM05D005790 ORTHO05D007464 1.1e-119 434.1 389 57.3
unitig_26.g10135 Utricularia gibba HOM05D005790 ORTHO05D007464 1.6e-118 430.3 386 54.7
Lj4A790T66 Lonicera japonica HOM05D005790 ORTHO05D007464 1.1e-117 427.6 308 69.5
CsaV3_UNG233270 Cucumis sativus L. HOM05D005790 ORTHO05D007464 3.1e-117 426.0 421 56.5
FAN27G0896 Fragaria x ananassa HOM05D005790 ORTHO05D007464 4.8e-102 375.6 416 50.2
Ah.05g171860 Amaranthus hybridus HOM05D005790 ORTHO05D007464 6.0e-97 358.6 333 54.1
Atru.chr13.345 Acer truncatum HOM05D005790 ORTHO05D007464 1.1e-95 354.4 219 75.8
Aqoxy4G01228 Aquilegia oxysepala HOM05D005790 ORTHO05D007464 1.4e-93 347.4 282 61.3
Mapoly0014s0217 Marchantia polymorpha HOM05D005790 ORTHO05D007464 3.1e-85 319.7 385 43.9
Aa31LG4G5850 Aethionema arabicum HOM05D005790 ORTHO05D007464 4.5e-84 315.8 292 55.5
SMO147G0253 Selaginella moellendorffii HOM05D005790 ORTHO05D007464 1.3e-83 314.3 385 44.4
TPR.G30295 Trifolium pratense HOM05D005790 ORTHO05D007464 8.7e-80 301.6 170 81.2
SalBow1G3128 Salvia bowleyana HOM05D005790 ORTHO05D007464 1.1e-79 301.2 217 66.8
Pp3c20_12860 Physcomitrium patens HOM05D005790 ORTHO05D007464 5.3e-77 292.4 385 41.3
Actinidia29793 Actinidia chinensis HOM05D005790 ORTHO05D007464 2.6e-76 290.0 412 45.4
Oeu061776.2 Olea europaea HOM05D005790 ORTHO05D000708 4.5e-76 289.3 361 46.0
Nitab4.5_0000402g0120 Nicotiana tabacum HOM05D005790 ORTHO05D007464 2.5e-71 273.5 247 58.7
CDE05G1328 Ceratophyllum demersum HOM05D005790 ORTHO05D007464 1.5e-68 264.2 169 70.4
Psat5g014800 Pisum sativum HOM05D005790 ORTHO05D007464 1.4e-66 257.7 242 56.2
RcHm_v2.0_Chr6g0302231 Rosa chinensis HOM05D005790 ORTHO05D007464 4.2e-66 256.1 256 55.9
Psat5g014760 Pisum sativum HOM05D005790 ORTHO05D007464 1.1e-63 248.1 141 79.4
Hund17229 Selenicereus undatus HOM05D005790 ORTHO05D007464 1.7e-62 244.2 146 72.6
RcHm_v2.0_Chr4g0408871 Rosa chinensis HOM05D005790 ORTHO05D007464 3.0e-56 223.4 386 40.2
MBI09_g08426_MAGBIO Magnolia biondii HOM05D005790 ORTHO05D007464 5.2e-56 222.6 384 40.9
CBR_g7976 Chara braunii HOM05D001993 ORTHO05D004040 1.2e-52 211.5 561 29.6
Cpa.g.sc140.27 Carica papaya HOM05D005790 ORTHO05D007464 7.7e-52 208.8 165 63.6
TWI36G0035 Tripterygium wilfordii HOM05D005790 ORTHO05D007464 7.2e-50 202.2 138 71.0
Gorai.010G006300 Gossypium raimondii HOM05D005790 ORTHO05D007464 9.4e-50 201.8 114 80.7
Nitab4.5_0000402g0130 Nicotiana tabacum HOM05D005790 ORTHO05D007464 1.8e-48 197.6 121 76.0
TPR.G30287 Trifolium pratense HOM05D005790 ORTHO05D007464 1.3e-46 191.4 152 61.2
AagrBONN_evm.TU.Sc2ySwM_369.164 Anthoceros agrestis HOM05D005790 ORTHO05D007464 1.4e-45 188.0 272 40.8
CBR_g24442 Chara braunii HOM05D005790 ORTHO05D007464 1.9e-42 177.6 218 44.5
Aa31LG4G5860 Aethionema arabicum HOM05D005790 ORTHO05D007464 5.5e-42 176.0 99 80.8
SEGI_31412 Sequoiadendron giganteum HOM05D005790 ORTHO05D007464 8.3e-38 162.2 242 38.8
RcHm_v2.0_Chr6g0302371 Rosa chinensis HOM05D005790 ORTHO05D007464 5.4e-37 159.5 180 51.7
Cre02.g076850 Chlamydomonas reinhardtii HOM05D005790 ORTHO05D007464 1.1e-34 151.8 429 28.9
Lj4C790T17 Lonicera japonica HOM05D005790 ORTHO05D007464 2.6e-31 140.6 79 86.1
HPP92_020941 Vanilla planifolia HOM05D005790 ORTHO05D007464 2.9e-30 137.1 135 53.3
MD15G1017900 Malus domestica HOM05D005790 ORTHO05D007464 1.7e-27 127.9 232 38.8
MD15G1018000 Malus domestica HOM05D005790 ORTHO05D007464 1.7e-27 127.9 232 38.8
MCO14G170 Micromonas commoda HOM05D005790 ORTHO05D007464 5.8e-23 112.8 455 26.6
Cfa025606 Carpinus fangiana HOM05D005790 ORTHO05D007464 7.5e-23 112.5 405 28.6
PRCOL_00000381 Prasinoderma coloniale HOM05D005790 ORTHO05D007832 1.3e-22 111.7 424 27.6
RcHm_v2.0_Chr6g0302301 Rosa chinensis HOM05D005790 ORTHO05D007464 1.2e-20 105.1 58 79.3
Cpa.g.sc140.30 Carica papaya HOM05D005790 ORTHO05D007464 1.3e-19 101.7 52 88.5
TAR625G0591 Trochodendron aralioides HOM05D000460 ORTHO05D000333 6.2e-17 92.8 103 46.6
SEGI_12232 Sequoiadendron giganteum HOM05D005790 ORTHO05D007464 8.1e-17 92.4 69 53.6
HPP92_020940 Vanilla planifolia HOM05D005790 ORTHO05D007464 1.9e-13 81.3 51 70.6
Hma1.2p1_1776F.1_g301940 Hydrangea macrophylla HOM05D005790 ORTHO05D007464 1.2e-09 68.6 40 72.5
CDE05G1505 Ceratophyllum demersum HOM05D005790 ORTHO05D007464 4.7e-09 66.6 41 70.7
COL.COLO4_38433 Corchorus olitorius HOM05D005790 ORTHO05D030850 1.4e-08 65.1 38 63.2
VMungo0331G1008 Vigna mungo HOM05D005790 ORTHO05D007464 2.0e-07 61.2 27 88.9
ECA247G3798 Erigeron canadensis HOM05D000464 ORTHO05D006292 3.4e-07 60.5 347 22.2
Psat5g117120 Pisum sativum HOM05D000464 ORTHO05D006292 7.6e-07 59.3 350 22.9
MELO3C026239.2 Cucumis melo HOM05D000464 ORTHO05D006292 1.3e-06 58.5 335 23.9
CsaV3_1G000870 Cucumis sativus L. HOM05D000464 ORTHO05D006292 1.3e-06 58.5 335 23.9
CSS0041467 Camellia sinensis var. sinensis HOM05D000464 ORTHO05D000408 1.7e-06 58.2 343 23.0
vmacro12361 Vaccinium macrocarpon HOM05D002561 ORTHO05D006466 1.7e-06 58.2 396 23.2
Actinidia29794 Actinidia chinensis HOM05D005790 ORTHO05D030850 2.2e-06 57.8 85 38.8
Gohir.A09G244600 Gossypium hirsutum HOM05D000464 ORTHO05D006292 4.9e-06 56.6 151 27.2
Lsat_1_v5_gn_4_78400 Lactuca sativa HOM05D000464 ORTHO05D006292 4.9e-06 56.6 341 23.2


User provided reference genes

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