Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.07G076800 Carya illinoinensis HOM05D002281 ORTHO05D006774 1.7e-302 1042.0 557 100.0
Cfa006305 Carpinus fangiana HOM05D002281 ORTHO05D006774 1.2e-250 869.8 476 89.7
RcHm_v2.0_Chr3g0448921 Rosa chinensis HOM05D002281 ORTHO05D006774 1.0e-246 856.7 469 87.4
Manes.09G145600 Manihot esculenta HOM05D002281 ORTHO05D006774 3.8e-246 854.7 476 86.6
FAN09G1447 Fragaria x ananassa HOM05D002281 ORTHO05D005599 2.5e-245 852.0 469 87.0
PGR142G3453 Punica granatum HOM05D002281 ORTHO05D006774 2.5e-245 852.0 481 86.3
Sed0014107 Sechium edule HOM05D002281 ORTHO05D006774 3.2e-245 851.7 472 86.7
GSVIVG01026351001 Vitis vinifera HOM05D002281 ORTHO05D006774 1.2e-244 849.7 472 87.9
FAN05G1274 Fragaria x ananassa HOM05D002281 ORTHO05D005599 1.6e-244 849.4 469 86.6
FvH4_6g01350 Fragaria vesca HOM05D002281 ORTHO05D006774 4.7e-244 847.8 469 86.6
FAN14G5004 Fragaria x ananassa HOM05D002281 ORTHO05D005599 1.4e-243 846.3 469 86.4
FAN05G1240 Fragaria x ananassa HOM05D002281 ORTHO05D005599 3.0e-243 845.1 469 86.4
Prupe.6G354700 Prunus persica HOM05D002281 ORTHO05D006774 3.0e-243 845.1 472 86.9
Eucgr.B02168 Eucalyptus grandis HOM05D002281 ORTHO05D006774 4.0e-243 844.7 481 85.7
FAN14G3852 Fragaria x ananassa HOM05D002281 ORTHO05D006774 4.0e-243 844.7 469 86.4
Thecc.05G264900 Theobroma cacao HOM05D002281 ORTHO05D006774 4.0e-243 844.7 477 85.1
TAR365G0274 Trochodendron aralioides HOM05D002281 ORTHO05D006774 8.8e-243 843.6 472 86.9
Nn3g19861 Nelumbo nucifera HOM05D002281 ORTHO05D006774 2.0e-242 842.4 472 86.7
MELO3C010108.2 Cucumis melo HOM05D002281 ORTHO05D006774 4.4e-242 841.3 472 85.4
Gohir.A13G103100 Gossypium hirsutum HOM05D002281 ORTHO05D006774 1.3e-241 839.7 476 84.5
Potri.019G025100 Populus trichocarpa HOM05D002281 ORTHO05D006774 1.3e-241 839.7 476 84.5
Gorai.013G119100 Gossypium raimondii HOM05D002281 ORTHO05D006774 1.7e-241 839.3 476 84.5
Gohir.D13G106200 Gossypium hirsutum HOM05D002281 ORTHO05D006774 2.8e-241 838.6 476 84.5
Oeu001246.1 Olea europaea HOM05D002281 ORTHO05D006774 4.9e-241 837.8 477 84.1
CsaV3_1G044940 Cucumis sativus L. HOM05D002281 ORTHO05D006774 3.1e-240 835.1 472 85.0
COL.COLO4_38180 Corchorus olitorius HOM05D002281 ORTHO05D006774 1.2e-239 833.2 472 84.7
Sabra19G0034700 Salix brachista HOM05D002281 ORTHO05D006774 1.2e-239 833.2 477 84.1
Ca_09982_v3 Cicer arietinum L. HOM05D002281 ORTHO05D006774 5.9e-239 830.9 473 84.8
Medtr1g079525 Medicago truncatula HOM05D002281 ORTHO05D006774 1.3e-238 829.7 471 84.7
MSTRG.27429 Avicennia marina HOM05D002281 ORTHO05D006774 1.7e-238 829.3 473 84.1
TWI60G1049 Tripterygium wilfordii HOM05D002281 ORTHO05D006774 2.9e-238 828.6 473 85.8
Aqoxy2G03815 Aquilegia oxysepala HOM05D002281 ORTHO05D006774 5.0e-238 827.8 477 83.4
Cc09_g03090 Coffea canephora HOM05D002281 ORTHO05D006774 6.6e-238 827.4 497 81.7
Ciclev10023441m.g Citrus clementina HOM05D002281 ORTHO05D006774 1.1e-237 826.6 477 83.6
Nitab4.5_0006530g0020 Nicotiana tabacum HOM05D002281 ORTHO05D006774 1.1e-237 826.6 475 84.0
CANSAT54G2391 Cannabis sativa HOM05D002281 ORTHO05D006774 1.5e-237 826.2 472 84.3
Atru.chr2.1137 Acer truncatum HOM05D002281 ORTHO05D006774 1.9e-237 825.9 472 84.3
Actinidia06827 Actinidia chinensis HOM05D002281 ORTHO05D006774 2.5e-237 825.5 480 83.8
Aa31LG5G14740 Aethionema arabicum HOM05D002281 ORTHO05D006774 3.3e-237 825.1 477 82.8
A01p40910 Brassica napus HOM05D002281 ORTHO05D006774 3.3e-237 825.1 477 82.6
BNapus_Darmor_BZH_scaffold_78p00800 Brassica napus HOM05D002281 ORTHO05D006774 3.3e-237 825.1 477 82.6
Lalb_Chr21g0311311 Lupinus albus HOM05D002281 ORTHO05D006774 4.2e-237 824.7 473 84.1
PSO063G1810 Papaver somniferum HOM05D002281 ORTHO05D006774 4.2e-237 824.7 482 83.2
Sopen04g021370 Solanum pennellii HOM05D002281 ORTHO05D006774 9.5e-237 823.5 475 84.0
CARHR078410 Cardamine hirsuta HOM05D002281 ORTHO05D006774 3.6e-236 821.6 477 82.6
Thhalv10020015m.g Eutrema salsugineum HOM05D002281 ORTHO05D006774 3.6e-236 821.6 477 82.4
Nitab4.5_0001498g0040 Nicotiana tabacum HOM05D002281 ORTHO05D006774 3.6e-236 821.6 475 83.4
BraA01t04526Z Brassica rapa HOM05D002281 ORTHO05D006774 4.7e-236 821.2 477 82.2
Sp3g03170 Schrenkiella parvula HOM05D002281 ORTHO05D006774 4.7e-236 821.2 477 82.0
Solyc04g050540.4 Solanum lycopersicum HOM05D002281 ORTHO05D006774 6.1e-236 820.8 475 83.6
Lj2C48G13 Lonicera japonica HOM05D002281 ORTHO05D006774 1.0e-235 820.1 472 84.7
arahy.Tifrunner.gnm1.ann1.BY82ZN Arachis hypogaea HOM05D002281 ORTHO05D006774 1.4e-235 819.7 476 84.2
EL10Ac4g09786 Beta vulgaris HOM05D002281 ORTHO05D006774 1.8e-235 819.3 478 83.1
BcaC09g47811 Brassica carinata HOM05D002281 ORTHO05D006774 1.8e-235 819.3 477 82.0
CSS0040843 Camellia sinensis var. sinensis HOM05D002281 ORTHO05D006774 5.2e-235 817.8 477 83.0
AL3G14240 Arabidopsis lyrata HOM05D002281 ORTHO05D006774 6.8e-235 817.4 477 82.2
CAN.G131.14 Capsicum annuum HOM05D002281 ORTHO05D006774 6.8e-235 817.4 472 83.5
AT3G04260 Arabidopsis thaliana HOM05D002281 ORTHO05D006774 1.2e-234 816.6 477 82.2
TPR.G31600 Trifolium pratense HOM05D002281 ORTHO05D006774 1.2e-234 816.6 472 83.5
AUR62006996 Chenopodium quinoa HOM05D002281 ORTHO05D006774 1.5e-234 816.2 478 82.2
THA.LOC104820754 Tarenaya hassleriana HOM05D002281 ORTHO05D006774 1.5e-234 816.2 472 83.1
Carub.0003s0347 Capsella rubella HOM05D002281 ORTHO05D006774 2.6e-234 815.5 477 81.8
Psat6g141840 Pisum sativum HOM05D002281 ORTHO05D006774 2.6e-234 815.5 473 83.7
PSO017G1794 Papaver somniferum HOM05D002281 ORTHO05D006774 1.3e-233 813.1 481 81.9
SGA_v2.0_scaffold62G21474 Striga asiatica HOM05D002281 ORTHO05D006774 6.3e-233 810.8 477 82.0
AUR62000641 Chenopodium quinoa HOM05D002281 ORTHO05D006774 1.2e-231 806.6 478 81.6
Glyma.20G221100 Glycine max HOM05D002281 ORTHO05D006774 1.2e-231 806.6 473 83.3
VMungo0720G2591 Vigna mungo HOM05D002281 ORTHO05D006774 2.7e-231 805.4 473 82.7
Migut.F02048 Erythranthe guttata HOM05D002281 ORTHO05D006774 2.3e-230 802.4 473 80.8
Glyma.10G168600 Glycine max HOM05D002281 ORTHO05D006774 5.0e-230 801.2 473 82.2
Phvul.L002432 Phaseolus vulgaris HOM05D002281 ORTHO05D006774 6.6e-230 800.8 473 82.0
MD04G1234900 Malus domestica HOM05D002281 ORTHO05D006774 2.8e-228 795.4 472 82.4
ATR0787G153 Amborella trichopoda HOM05D002281 ORTHO05D006774 6.1e-228 794.3 477 81.3
Lj5g0010111 Lotus japonicus HOM05D002281 ORTHO05D006774 2.5e-221 772.3 473 79.9
BcaNung04817 Brassica carinata HOM05D002281 ORTHO05D006774 3.3e-221 771.9 477 78.0
Peaxi162Scf00071g00258 Petunia axillaris HOM05D002281 ORTHO05D006774 4.1e-216 755.0 476 79.0
DCAR_027530 Daucus carota HOM05D002281 ORTHO05D006774 1.3e-214 750.0 474 77.2
HanXRQChr14g0434631 Helianthus annuus HOM05D002281 ORTHO05D006774 5.1e-214 748.0 472 75.6
Zm00001eb046590 Zea mays HOM05D002281 ORTHO05D006774 9.9e-210 733.8 477 73.6
unitig_899.g14420 Utricularia gibba HOM05D002281 ORTHO05D006774 1.7e-209 733.0 473 76.5
Lsat_1_v5_gn_2_16580 Lactuca sativa HOM05D002281 ORTHO05D006774 8.4e-209 730.7 472 73.3
Dinv05783 Davidia involucrata HOM05D002281 ORTHO05D006774 3.2e-208 728.8 472 77.5
Os10g0462800 Oryza sativa ssp. japonica HOM05D002281 ORTHO05D006774 2.7e-207 725.7 477 73.4
Hund07166 Selenicereus undatus HOM05D002281 ORTHO05D006774 2.7e-207 725.7 472 76.3
ECA238G3638 Erigeron canadensis HOM05D002281 ORTHO05D006774 6.6e-206 721.1 461 74.4
HPP92_025553 Vanilla planifolia HOM05D002281 ORTHO05D006774 3.4e-202 708.8 476 73.9
arahy.Tifrunner.gnm1.ann1.76MSW2 Arachis hypogaea HOM05D002281 ORTHO05D006774 2.9e-201 705.7 482 74.9
SEGI_16679 Sequoiadendron giganteum HOM05D002281 ORTHO05D006774 7.9e-175 617.8 478 64.0
AagrBONN_evm.TU.Sc2ySwM_368.3437 Anthoceros agrestis HOM05D002281 ORTHO05D006774 2.9e-153 546.2 473 57.1
Mapoly0031s0123 Marchantia polymorpha HOM05D002281 ORTHO05D006774 1.2e-146 524.2 472 55.1
Sc16g0010030 Simmondsia chinensis HOM05D002281 ORTHO05D006774 6.8e-134 481.9 266 86.8
Sabra19G0037700 Salix brachista HOM05D002281 ORTHO05D006774 1.5e-133 480.7 258 87.6
SMO367G1266 Selaginella moellendorffii HOM05D002281 ORTHO05D006774 1.6e-130 470.7 490 50.4
Hma1.2p1_0123F.1_g058100 Hydrangea macrophylla HOM05D002281 ORTHO05D006774 2.3e-126 456.8 258 85.3
Hma1.2p1_0123F.1_g058110 Hydrangea macrophylla HOM05D002281 ORTHO05D006774 2.3e-126 456.8 258 85.3
Pp3c1_8170 Physcomitrium patens HOM05D002281 ORTHO05D006774 3.6e-119 433.0 478 47.7
Cpa.g.sc51.34 Carica papaya HOM05D002281 ORTHO05D006774 1.2e-101 374.8 214 83.6
CDE02G1511 Ceratophyllum demersum HOM05D002281 ORTHO05D006774 4.4e-101 372.9 201 88.6
Haze_04483 Corylus avellana HOM05D002281 ORTHO05D006774 1.9e-96 357.5 194 91.2
vmacro19969 Vaccinium macrocarpon HOM05D002281 ORTHO05D006774 2.8e-95 353.6 227 75.8
ClCG03G011350 Citrullus lanatus HOM05D002281 ORTHO05D006774 8.4e-92 342.0 192 87.5
CBR_g7996 Chara braunii HOM05D002281 ORTHO05D006774 2.7e-90 337.0 476 38.4
Ah.13g065840 Amaranthus hybridus HOM05D002281 ORTHO05D006774 6.2e-87 325.9 197 81.2
Actinidia39975 Actinidia chinensis HOM05D002281 ORTHO05D006774 7.6e-85 318.9 194 81.4
Hma1.2p1_0123F.1_g058090 Hydrangea macrophylla HOM05D002281 ORTHO05D006774 9.9e-85 318.5 192 80.2
ClCG03G011380 Citrullus lanatus HOM05D002281 ORTHO05D006774 2.7e-74 283.9 158 84.2
Rhsim05G0169000 Rhododendron simsii HOM05D002281 ORTHO05D006774 1.5e-72 278.1 159 81.8
QL03p033056 Quercus lobata HOM05D002281 ORTHO05D006774 1.1e-67 261.9 145 85.5
CDE02G2074 Ceratophyllum demersum HOM05D002281 ORTHO05D006774 2.0e-61 241.1 133 84.2
Haze_04484 Corylus avellana HOM05D002281 ORTHO05D006774 4.5e-61 240.0 177 70.1
Hma1.2p1_0463F.1_g158160 Hydrangea macrophylla HOM05D002281 ORTHO05D006774 1.4e-51 208.4 128 78.1
ClCG03G011370 Citrullus lanatus HOM05D002281 ORTHO05D006774 7.4e-48 196.1 111 85.6
vmacro19968 Vaccinium macrocarpon HOM05D002281 ORTHO05D006774 1.1e-46 192.2 103 85.4
vmacro19967 Vaccinium macrocarpon HOM05D002281 ORTHO05D006774 1.9e-43 181.4 101 81.2
Cpa.g.sc51.35 Carica papaya HOM05D002281 ORTHO05D006774 1.4e-33 148.7 79 89.9
RcHm_v2.0_Chr1g0330901 Rosa chinensis HOM05D002281 ORTHO05D006774 5.9e-21 106.7 69 75.4
CDE08G0752 Ceratophyllum demersum HOM05D002281 ORTHO05D006774 3.6e-18 97.4 63 74.6
Os10g0460900 Oryza sativa ssp. japonica HOM05D006403 ORTHO05D008130 1.2e-13 82.4 72 55.6
Os10g0461100 Oryza sativa ssp. japonica HOM05D002933 ORTHO05D007742 1.2e-13 82.4 72 55.6
Solyc01g015200.1 Solanum lycopersicum HOM05D002281 ORTHO05D006774 1.6e-13 82.0 77 51.9
Solyc01g013970.1 Solanum lycopersicum HOM05D002281 ORTHO05D006774 1.3e-12 79.0 70 54.3
Actinidia39976 Actinidia chinensis HOM05D002281 ORTHO05D006774 1.9e-11 75.1 59 66.1
MELO3C009563.2 Cucumis melo HOM05D006596 ORTHO05D008497 5.2e-09 67.0 226 24.8
TPR.G31597 Trifolium pratense HOM05D002281 ORTHO05D006774 2.6e-08 64.7 40 72.5
Cre12.g497350 Chlamydomonas reinhardtii HOM05D002281 ORTHO05D006774 3.4e-08 64.3 232 23.3
FvH4_6g01352 Fragaria vesca HOM05D002281 ORTHO05D006774 3.4e-08 64.3 40 75.0
CsaV3_3G038200 Cucumis sativus L. HOM05D006596 ORTHO05D008497 4.4e-08 63.9 226 24.3
ClCG10G018100 Citrullus lanatus HOM05D006596 ORTHO05D008497 5.7e-08 63.5 191 27.7
CSS0012562 Camellia sinensis var. sinensis HOM05D002281 ORTHO05D006774 7.5e-08 63.2 67 53.7
AagrBONN_evm.TU.Sc2ySwM_344.5118 Anthoceros agrestis HOM05D000001 ORTHO05D000003 1.7e-07 62.0 275 24.7


User provided reference genes

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