Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.06G143700 Carya illinoinensis HOM05D005383 ORTHO05D006722 5.4e-166 587.8 342 100.0
CiPaw.05G051100 Carya illinoinensis HOM05D005383 ORTHO05D006722 3.9e-124 448.7 374 77.0
Prupe.1G576100 Prunus persica HOM05D005383 ORTHO05D006722 1.6e-122 443.4 332 82.8
QL02p099934 Quercus lobata HOM05D005383 ORTHO05D006722 1.8e-116 423.3 372 73.9
Haze_01820 Corylus avellana HOM05D005383 ORTHO05D006722 5.6e-115 418.3 401 61.3
Duzib248G0552 Durio zibethinus HOM05D005383 ORTHO05D006722 2.1e-109 399.8 346 68.8
COL.COLO4_17761 Corchorus olitorius HOM05D005383 ORTHO05D006722 1.0e-108 397.5 347 68.9
Sed0026787 Sechium edule HOM05D005383 ORTHO05D006722 1.8e-108 396.7 373 70.2
Ca_00052_v3 Cicer arietinum L. HOM05D005383 ORTHO05D006722 3.0e-108 396.0 375 70.1
RcHm_v2.0_Chr7g0220861 Rosa chinensis HOM05D005383 ORTHO05D006722 1.6e-106 390.2 363 72.2
Hund12945 Selenicereus undatus HOM05D005383 ORTHO05D006722 2.8e-106 389.4 331 74.6
GSVIVG01023286001 Vitis vinifera HOM05D005383 ORTHO05D006722 1.4e-105 387.1 373 69.4
MD08G1239600 Malus domestica HOM05D005383 ORTHO05D006722 2.4e-105 386.3 366 69.1
CANSAT54G1323 Cannabis sativa HOM05D005383 ORTHO05D006722 3.4e-104 382.5 376 68.1
Thecc.02G025800 Theobroma cacao HOM05D005383 ORTHO05D006722 1.0e-103 380.9 374 69.3
Ciclev10001534m.g Citrus clementina HOM05D005383 ORTHO05D006722 1.4e-102 377.1 374 66.8
Gohir.D01G173100 Gossypium hirsutum HOM05D005383 ORTHO05D006722 1.6e-101 373.6 374 66.8
Cpa.g.sc161.1 Carica papaya HOM05D005383 ORTHO05D006722 2.1e-101 373.2 373 67.3
FvH4_5g28700 Fragaria vesca HOM05D005383 ORTHO05D006722 2.1e-101 373.2 374 69.0
FAN08G2879 Fragaria x ananassa HOM05D005383 ORTHO05D006722 3.5e-101 372.5 374 68.7
Gohir.A01G182000 Gossypium hirsutum HOM05D005383 ORTHO05D006722 6.0e-101 371.7 374 66.8
Gorai.002G214700 Gossypium raimondii HOM05D005383 ORTHO05D006722 6.0e-101 371.7 374 66.6
FAN13G0305 Fragaria x ananassa HOM05D005383 ORTHO05D006722 3.9e-100 369.0 397 65.7
arahy.Tifrunner.gnm1.ann1.UJ0XJV Arachis hypogaea HOM05D005383 ORTHO05D006722 1.5e-99 367.1 373 66.5
Ciclev10003783m.g Citrus clementina HOM05D005383 ORTHO05D006722 3.3e-99 365.9 374 66.0
CSS0013900 Camellia sinensis var. sinensis HOM05D005383 ORTHO05D006722 4.3e-99 365.5 378 66.9
CSS0016011 Camellia sinensis var. sinensis HOM05D005383 ORTHO05D006722 4.3e-99 365.5 378 66.9
Manes.10G120600 Manihot esculenta HOM05D005383 ORTHO05D006722 4.3e-99 365.5 362 68.5
Glyma.08G126300 Glycine max HOM05D005383 ORTHO05D006722 5.7e-99 365.2 376 66.2
Glyma.05G167900 Glycine max HOM05D005383 ORTHO05D006722 9.7e-99 364.4 375 66.1
Potri.003G010400 Populus trichocarpa HOM05D005383 ORTHO05D006722 2.2e-98 363.2 370 67.8
Atru.chr6.733 Acer truncatum HOM05D005383 ORTHO05D006722 4.8e-98 362.1 373 66.5
CsaV3_5G029920 Cucumis sativus L. HOM05D005383 ORTHO05D006722 4.8e-98 362.1 373 66.2
VMungo0251G3735 Vigna mungo HOM05D005383 ORTHO05D006722 8.2e-98 361.3 376 66.2
TPR.G2110 Trifolium pratense HOM05D005383 ORTHO05D006722 1.1e-97 360.9 378 67.7
MELO3C011837.2 Cucumis melo HOM05D005383 ORTHO05D006722 1.8e-97 360.1 373 66.2
Psat1g221920 Pisum sativum HOM05D005383 ORTHO05D006722 3.1e-97 359.4 376 67.3
Eucgr.G00356 Eucalyptus grandis HOM05D005383 ORTHO05D006722 1.2e-96 357.5 375 65.6
Phvul.002G248200 Phaseolus vulgaris HOM05D005383 ORTHO05D006722 1.7e-95 353.6 376 65.2
Nn5g27588 Nelumbo nucifera HOM05D005383 ORTHO05D006722 1.9e-94 350.1 372 64.0
Lalb_Chr07g0185851 Lupinus albus HOM05D005383 ORTHO05D006722 3.2e-94 349.4 383 65.8
Cc02_g22940 Coffea canephora HOM05D005383 ORTHO05D006722 4.2e-94 349.0 371 65.8
Potri.004G221700 Populus trichocarpa HOM05D005383 ORTHO05D006722 5.5e-94 348.6 371 65.0
Sed0022153 Sechium edule HOM05D005383 ORTHO05D006722 7.2e-94 348.2 374 64.7
Lj4g0022432 Lotus japonicus HOM05D005383 ORTHO05D006722 1.6e-93 347.1 375 66.4
Dinv01847 Davidia involucrata HOM05D005383 ORTHO05D006722 2.3e-92 343.2 345 68.4
TWI23G0375 Tripterygium wilfordii HOM05D005383 ORTHO05D006722 3.0e-92 342.8 374 65.2
TAR628G0519 Trochodendron aralioides HOM05D005383 ORTHO05D006722 1.5e-91 340.5 373 64.1
Rhsim11G0125900 Rhododendron simsii HOM05D005383 ORTHO05D006722 3.3e-91 339.3 371 63.9
Sabra03G0005300 Salix brachista HOM05D005383 ORTHO05D006722 5.7e-91 338.6 487 43.7
Nitab4.5_0009812g0010 Nicotiana tabacum HOM05D005383 ORTHO05D006722 7.4e-91 338.2 364 63.7
MSTRG.5117 Avicennia marina HOM05D005383 ORTHO05D006722 9.7e-91 337.8 374 64.2
PGSC0003DMG400009082 Solanum tuberosum HOM05D005383 ORTHO05D006722 1.5e-88 330.5 367 61.3
Nitab4.5_0000548g0200 Nicotiana tabacum HOM05D005383 ORTHO05D006722 2.0e-88 330.1 374 62.6
Lalb_Chr13g0295611 Lupinus albus HOM05D005383 ORTHO05D006722 3.4e-88 329.3 382 63.9
PGR042G1418 Punica granatum HOM05D005383 ORTHO05D006722 2.2e-87 326.6 385 61.0
Hma1.2p1_1108F.1_g257860 Hydrangea macrophylla HOM05D005383 ORTHO05D006722 5.0e-87 325.5 375 62.4
DCAR_025351 Daucus carota HOM05D005383 ORTHO05D006722 6.5e-87 325.1 343 63.0
Solyc03g083310.4 Solanum lycopersicum HOM05D005383 ORTHO05D006722 8.5e-87 324.7 383 60.1
Peaxi162Scf00003g04037 Petunia axillaris HOM05D005383 ORTHO05D006722 2.5e-86 323.2 342 64.9
EL10Ac2g02705 Beta vulgaris HOM05D005383 ORTHO05D006722 1.6e-85 320.5 373 61.4
TAR381G0956 Trochodendron aralioides HOM05D005383 ORTHO05D006722 3.6e-85 319.3 374 60.7
CAN.G968.1 Capsicum annuum HOM05D005383 ORTHO05D006722 3.9e-84 315.8 376 60.6
TWI59G0781 Tripterygium wilfordii HOM05D005383 ORTHO05D006722 5.7e-83 312.0 374 62.3
Ciclev10003892m.g Citrus clementina HOM05D005383 ORTHO05D006722 7.4e-83 311.6 322 67.1
Sopen03g023060 Solanum pennellii HOM05D005383 ORTHO05D006722 1.8e-81 307.0 380 57.9
Lj9A301T38 Lonicera japonica HOM05D005383 ORTHO05D006722 1.2e-80 304.3 355 64.2
THA.LOC104801420 Tarenaya hassleriana HOM05D005383 ORTHO05D006722 3.4e-80 302.8 381 61.9
Lsat_1_v5_gn_4_6600 Lactuca sativa HOM05D005383 ORTHO05D006722 2.2e-79 300.1 384 58.1
vmacro01730 Vaccinium macrocarpon HOM05D005383 ORTHO05D006722 3.8e-79 299.3 381 60.1
PSO063G2254 Papaver somniferum HOM05D005383 ORTHO05D006722 5.5e-78 295.4 368 60.9
arahy.Tifrunner.gnm1.ann1.I6AGPX Arachis hypogaea HOM05D005383 ORTHO05D006722 8.0e-77 291.6 347 64.0
arahy.Tifrunner.gnm1.ann1.E4SRBI Arachis hypogaea HOM05D005383 ORTHO05D006722 5.2e-76 288.9 347 63.4
Migut.B00804 Erythranthe guttata HOM05D005383 ORTHO05D006722 1.1e-75 287.7 358 59.8
PSO017G2626 Papaver somniferum HOM05D005383 ORTHO05D006722 1.1e-75 287.7 368 59.8
unitig_699.g19853 Utricularia gibba HOM05D005383 ORTHO05D006722 5.3e-73 278.9 359 49.0
CDE08G1140 Ceratophyllum demersum HOM05D005383 ORTHO05D006722 1.2e-72 277.7 376 56.1
CDE02G2650 Ceratophyllum demersum HOM05D005383 ORTHO05D006722 1.7e-71 273.9 376 55.1
BcaC04g20728 Brassica carinata HOM05D005383 ORTHO05D006722 5.0e-71 272.3 375 56.5
BolC9t56882H Brassica oleracea HOM05D005383 ORTHO05D006722 5.0e-71 272.3 375 56.5
BraSC35t46002Z Brassica rapa HOM05D005383 ORTHO05D006722 2.5e-70 270.0 375 56.3
Thhalv10028723m.g Eutrema salsugineum HOM05D005383 ORTHO05D006722 2.5e-70 270.0 382 56.0
SGA_v2.0_scaffold42G15921 Striga asiatica HOM05D005383 ORTHO05D006722 4.2e-70 269.2 388 55.9
Sp6g13330 Schrenkiella parvula HOM05D005383 ORTHO05D006722 5.5e-70 268.9 361 57.3
A10p07980 Brassica napus HOM05D005383 ORTHO05D006722 7.2e-70 268.5 373 56.3
HanXRQChr08g0209021 Helianthus annuus HOM05D005383 ORTHO05D006722 7.2e-70 268.5 331 61.6
ECA233G1887 Erigeron canadensis HOM05D005383 ORTHO05D006722 1.4e-68 264.2 371 56.1
HanXRQChr04g0103661 Helianthus annuus HOM05D005383 ORTHO05D006722 1.4e-68 264.2 378 56.1
C09p39820 Brassica napus HOM05D005383 ORTHO05D006722 2.3e-68 263.5 363 57.0
Aa31LG3G14030 Aethionema arabicum HOM05D005383 ORTHO05D006722 6.7e-68 261.9 380 55.3
Carub.0006s2631 Capsella rubella HOM05D005383 ORTHO05D006722 5.7e-67 258.8 381 55.1
Aqoxy6G00141 Aquilegia oxysepala HOM05D005383 ORTHO05D006722 1.2e-64 251.1 327 58.7
AL6G41240 Arabidopsis lyrata HOM05D005383 ORTHO05D006722 2.0e-64 250.4 387 53.5
C03p19190 Brassica napus HOM05D005383 ORTHO05D006722 5.9e-64 248.8 368 54.6
Actinidia00189 Actinidia chinensis HOM05D005383 ORTHO05D006722 1.3e-63 247.7 278 64.4
AT4G06634 Arabidopsis thaliana HOM05D005383 ORTHO05D006722 2.9e-63 246.5 387 53.0
BolC3t14307H Brassica oleracea HOM05D005383 ORTHO05D006722 1.9e-62 243.8 382 49.0
BcaB08g35467 Brassica carinata HOM05D005383 ORTHO05D006722 2.5e-62 243.4 374 53.2
A03p16300 Brassica napus HOM05D005383 ORTHO05D006722 2.5e-62 243.4 370 53.2
BraA03t10921Z Brassica rapa HOM05D005383 ORTHO05D006722 2.5e-62 243.4 380 48.7
Oeu036675.1 Olea europaea HOM05D005383 ORTHO05D006722 4.7e-61 239.2 320 59.7
CARHR260070 Cardamine hirsuta HOM05D005383 ORTHO05D006722 8.0e-61 238.4 390 53.6
MSTRG.16504 Avicennia marina HOM05D005383 ORTHO05D006722 8.8e-60 235.0 319 59.9
Sc07g0004970 Simmondsia chinensis HOM05D005383 ORTHO05D006722 1.8e-57 227.3 326 58.6
ATR0071G030 Amborella trichopoda HOM05D005383 ORTHO05D006722 2.4e-57 226.9 327 57.5
Lsat_1_v5_gn_8_160061 Lactuca sativa HOM05D005383 ORTHO05D006722 7.0e-57 225.3 271 57.2
HPP92_009272 Vanilla planifolia HOM05D005383 ORTHO05D006722 2.0e-56 223.8 361 53.5
BcaC01g06099 Brassica carinata HOM05D005383 ORTHO05D006722 1.0e-55 221.5 364 51.9
AUR62041111 Chenopodium quinoa HOM05D005383 ORTHO05D006722 1.7e-55 220.7 213 60.6
HPP92_013744 Vanilla planifolia HOM05D006763 ORTHO05D008659 3.6e-53 213.0 311 56.3
BcaC01g06075 Brassica carinata HOM05D005383 ORTHO05D006722 8.0e-53 211.8 367 50.7
unitig_747.g21262 Utricularia gibba HOM05D005383 ORTHO05D006722 4.4e-51 206.1 367 50.4
Sabra01G0167800 Salix brachista HOM05D005383 ORTHO05D006722 3.7e-50 203.0 182 61.5
MD15G1431100 Malus domestica HOM05D005383 ORTHO05D006722 4.9e-50 202.6 305 57.4
Peaxi162Scf03254g00012 Petunia axillaris HOM05D005383 ORTHO05D006722 1.1e-49 201.4 165 64.2
Os02g0551900 Oryza sativa ssp. japonica HOM05D005383 ORTHO05D006722 5.9e-48 195.7 347 49.9
FAN04G2588 Fragaria x ananassa HOM05D005383 ORTHO05D006722 1.4e-44 184.5 106 81.1
Actinidia39015 Actinidia chinensis HOM05D005383 ORTHO05D006722 2.3e-44 183.7 106 78.3
Os05g0106000 Oryza sativa ssp. japonica HOM05D005383 ORTHO05D006722 4.0e-44 183.0 377 44.3
CAN.G982.21 Capsicum annuum HOM05D005383 ORTHO05D006722 1.2e-43 181.4 208 51.0
ClCG11G013400 Citrullus lanatus HOM05D005383 ORTHO05D006722 3.2e-41 173.3 106 75.5
Zm00001eb267130 Zea mays HOM05D005383 ORTHO05D006722 1.1e-38 164.9 372 43.5
Zm00001eb181970 Zea mays HOM05D005383 ORTHO05D006722 9.5e-38 161.8 301 48.8
Zm00001eb243510 Zea mays HOM05D005383 ORTHO05D006722 9.5e-38 161.8 307 49.2
FAN18G2475 Fragaria x ananassa HOM05D005383 ORTHO05D006722 8.9e-28 128.6 107 61.7
Peaxi162Scf00003g03953 Petunia axillaris HOM05D000011 ORTHO05D011267 8.9e-28 128.6 146 49.3
SEGI_13518 Sequoiadendron giganteum HOM05D005383 ORTHO05D006722 3.4e-27 126.7 89 61.8
Mapoly0095s0037 Marchantia polymorpha HOM05D005383 ORTHO05D006722 8.6e-23 112.1 363 39.7
AagrBONN_evm.TU.Sc2ySwM_228.1706 Anthoceros agrestis HOM05D005383 ORTHO05D006722 2.8e-21 107.1 245 48.2
CBR_g52462 Chara braunii HOM05D005383 ORTHO05D006722 4.7e-21 106.3 280 43.2
ATR0071G005 Amborella trichopoda HOM05D005383 ORTHO05D006722 2.6e-19 100.5 96 55.2
SMO347G0081 Selaginella moellendorffii HOM05D005383 ORTHO05D006722 8.4e-18 95.5 224 45.1
Pp3c7_7980 Physcomitrium patens HOM05D005383 ORTHO05D006722 7.1e-17 92.4 414 36.2
arahy.Tifrunner.gnm1.ann1.VA1YNF Arachis hypogaea HOM05D005383 ORTHO05D006722 4.3e-14 83.2 58 70.7
arahy.Tifrunner.gnm1.ann1.L3LYUI Arachis hypogaea HOM05D005383 ORTHO05D031493 6.2e-13 79.3 58 67.2
arahy.Tifrunner.gnm1.ann1.0L29ML Arachis hypogaea HOM05D005383 ORTHO05D006722 8.1e-13 79.0 56 69.6
arahy.Tifrunner.gnm1.ann1.XX0GIY Arachis hypogaea HOM05D005383 ORTHO05D006722 4.0e-12 76.6 56 67.9


User provided reference genes

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