Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.06G059900 Carya illinoinensis HOM05D004464 ORTHO05D005135 5.1e-102 374.4 186 100.0
CiPaw.15G080600 Carya illinoinensis HOM05D004464 ORTHO05D005135 5.8e-98 360.9 186 94.6
QL09p044371 Quercus lobata HOM05D004464 ORTHO05D005135 5.8e-90 334.3 184 87.0
QL02p065152 Quercus lobata HOM05D004464 ORTHO05D005135 2.7e-87 325.5 184 83.7
Cfa007699 Carpinus fangiana HOM05D004464 ORTHO05D005135 4.3e-85 318.2 184 83.2
CANSAT64G2552 Cannabis sativa HOM05D004464 ORTHO05D005135 4.5e-82 308.1 184 81.0
TAR371G0146 Trochodendron aralioides HOM05D004464 ORTHO05D005135 7.6e-82 307.4 184 81.0
CANSAT11G0238 Cannabis sativa HOM05D004464 ORTHO05D005135 9.9e-82 307.0 184 79.9
GSVIVG01036537001 Vitis vinifera HOM05D004464 ORTHO05D005135 9.9e-82 307.0 184 81.0
Dinv33871 Davidia involucrata HOM05D004464 ORTHO05D005135 3.8e-81 305.1 184 80.4
Dinv34904 Davidia involucrata HOM05D004464 ORTHO05D005135 8.4e-81 303.9 184 81.0
Ciclev10012892m.g Citrus clementina HOM05D004464 ORTHO05D005135 1.4e-80 303.1 184 78.8
Prupe.3G248300 Prunus persica HOM05D004464 ORTHO05D005135 1.4e-80 303.1 184 79.3
PGR042G1328 Punica granatum HOM05D004464 ORTHO05D005135 1.4e-80 303.1 184 79.3
Nn4g23543 Nelumbo nucifera HOM05D004464 ORTHO05D005135 1.9e-80 302.8 184 78.8
Sabra17G0087000 Salix brachista HOM05D004464 ORTHO05D005135 3.2e-80 302.0 184 76.6
Phvul.007G072900 Phaseolus vulgaris HOM05D004464 ORTHO05D005135 4.2e-80 301.6 184 78.8
Actinidia26272 Actinidia chinensis HOM05D004464 ORTHO05D005135 5.5e-80 301.2 184 79.3
Glyma.10G232700 Glycine max HOM05D004464 ORTHO05D005135 7.1e-80 300.8 184 77.7
Glyma.20G161600 Glycine max HOM05D004464 ORTHO05D005135 7.1e-80 300.8 184 77.7
Potri.017G101200 Populus trichocarpa HOM05D004464 ORTHO05D005135 1.2e-79 300.1 184 76.6
Duzib150G0689 Durio zibethinus HOM05D004464 ORTHO05D005135 1.6e-79 299.7 184 78.3
Actinidia17608 Actinidia chinensis HOM05D004464 ORTHO05D005135 2.1e-79 299.3 184 78.8
CDE10G0456 Ceratophyllum demersum HOM05D004464 ORTHO05D005135 2.1e-79 299.3 184 76.6
HanXRQChr15g0490131 Helianthus annuus HOM05D004464 ORTHO05D005135 2.1e-79 299.3 184 78.3
MD09G1075700 Malus domestica HOM05D004464 ORTHO05D005135 2.7e-79 298.9 184 78.8
COL.COLO4_21291 Corchorus olitorius HOM05D004464 ORTHO05D005135 4.6e-79 298.1 184 79.3
ClCG07G016070 Citrullus lanatus HOM05D004464 ORTHO05D005135 6.0e-79 297.7 184 77.2
Gohir.D05G003500 Gossypium hirsutum HOM05D004464 ORTHO05D005135 6.0e-79 297.7 184 76.6
Gorai.009G003100 Gossypium raimondii HOM05D004464 ORTHO05D005135 6.0e-79 297.7 184 76.6
SGA_v2.0_scaffold148G36455 Striga asiatica HOM05D004464 ORTHO05D005135 6.0e-79 297.7 184 77.7
Eucgr.J01412 Eucalyptus grandis HOM05D004464 ORTHO05D005135 7.9e-79 297.4 184 77.2
Manes.01G100100 Manihot esculenta HOM05D004464 ORTHO05D005135 7.9e-79 297.4 184 77.2
Migut.K00882 Erythranthe guttata HOM05D004464 ORTHO05D005135 1.0e-78 297.0 186 76.9
MD17G1066400 Malus domestica HOM05D004464 ORTHO05D005135 1.0e-78 297.0 184 77.7
MSTRG.15432 Avicennia marina HOM05D004464 ORTHO05D005135 1.3e-78 296.6 184 77.7
CsaV3_4G010040 Cucumis sativus L. HOM05D004464 ORTHO05D005135 1.3e-78 296.6 184 76.6
Gohir.A05G003100 Gossypium hirsutum HOM05D004464 ORTHO05D005135 1.3e-78 296.6 184 76.6
Hma1.2p1_1837F.1_g304810 Hydrangea macrophylla HOM05D004464 ORTHO05D005135 1.3e-78 296.6 184 78.3
Lalb_Chr16g0389591 Lupinus albus HOM05D004464 ORTHO05D005135 3.0e-78 295.4 184 76.6
Psat7g017000 Pisum sativum HOM05D004464 ORTHO05D005135 3.0e-78 295.4 184 77.7
Potri.004G113600 Populus trichocarpa HOM05D004464 ORTHO05D005135 3.0e-78 295.4 184 75.0
Thecc.01G298100 Theobroma cacao HOM05D004464 ORTHO05D005135 3.0e-78 295.4 184 76.6
Atru.chr12.814 Acer truncatum HOM05D004464 ORTHO05D005135 3.9e-78 295.0 184 75.5
Sabra10G0012000 Salix brachista HOM05D004464 ORTHO05D005135 3.9e-78 295.0 191 73.8
Sopen02g034060 Solanum pennellii HOM05D004464 ORTHO05D005135 3.9e-78 295.0 184 77.7
FvH4_6g46310 Fragaria vesca HOM05D004464 ORTHO05D005135 6.7e-78 294.3 184 76.6
FAN02G0274 Fragaria x ananassa HOM05D004464 ORTHO05D005135 6.7e-78 294.3 184 76.6
FAN14G2017 Fragaria x ananassa HOM05D004464 ORTHO05D005135 6.7e-78 294.3 184 76.6
SalBow1G0807 Salvia bowleyana HOM05D004464 ORTHO05D005135 6.7e-78 294.3 184 77.2
Lj3g0020854 Lotus japonicus HOM05D004464 ORTHO05D005135 8.7e-78 293.9 184 76.6
Lj4g0017621 Lotus japonicus HOM05D004464 ORTHO05D005135 8.7e-78 293.9 184 76.6
VMungo0720G0545 Vigna mungo HOM05D004464 ORTHO05D005135 8.7e-78 293.9 184 77.7
Solyc02g089280.3 Solanum lycopersicum HOM05D004464 ORTHO05D005135 1.1e-77 293.5 184 77.2
CDE10G0562 Ceratophyllum demersum HOM05D004464 ORTHO05D005135 1.5e-77 293.1 184 76.6
TPR.G29907 Trifolium pratense HOM05D004464 ORTHO05D005135 1.9e-77 292.7 184 75.0
FAN05G3637 Fragaria x ananassa HOM05D004464 ORTHO05D005135 2.5e-77 292.4 184 76.1
MBI15_g04989_MAGBIO Magnolia biondii HOM05D004464 ORTHO05D005135 2.5e-77 292.4 184 75.5
MBI15_g11301_MAGBIO Magnolia biondii HOM05D004464 ORTHO05D005135 2.5e-77 292.4 184 75.5
RcHm_v2.0_Chr2g0164761 Rosa chinensis HOM05D004464 ORTHO05D005135 2.5e-77 292.4 184 76.6
Sed0009719 Sechium edule HOM05D004464 ORTHO05D005135 2.5e-77 292.4 184 76.1
Hund16239 Selenicereus undatus HOM05D004464 ORTHO05D005135 2.5e-77 292.4 184 76.6
PGSC0003DMG400001469 Solanum tuberosum HOM05D004464 ORTHO05D005135 2.5e-77 292.4 184 76.6
SGA_v2.0_scaffold163G37992 Striga asiatica HOM05D004464 ORTHO05D005135 3.3e-77 292.0 184 77.2
DCAR_016093 Daucus carota HOM05D004464 ORTHO05D005135 4.3e-77 291.6 184 75.0
TPR.G23462 Trifolium pratense HOM05D004464 ORTHO05D005135 7.4e-77 290.8 184 75.0
FAN09G0031 Fragaria x ananassa HOM05D004464 ORTHO05D005135 9.6e-77 290.4 184 75.5
Sc07g0002150 Simmondsia chinensis HOM05D004464 ORTHO05D005135 9.6e-77 290.4 184 76.1
Nitab4.5_0001339g0030 Nicotiana tabacum HOM05D004464 ORTHO05D005135 1.3e-76 290.0 184 76.1
CSS0016516 Camellia sinensis var. sinensis HOM05D004464 ORTHO05D005135 2.1e-76 289.3 184 73.9
TWI36G0525 Tripterygium wilfordii HOM05D004464 ORTHO05D005135 2.1e-76 289.3 184 72.8
TWI36G0787 Tripterygium wilfordii HOM05D004464 ORTHO05D005135 2.1e-76 289.3 184 72.8
CSS0037173 Camellia sinensis var. sinensis HOM05D004464 ORTHO05D005135 2.8e-76 288.9 184 73.9
Cc07_g04530 Coffea canephora HOM05D004464 ORTHO05D005135 2.8e-76 288.9 184 75.5
arahy.Tifrunner.gnm1.ann1.6V5APJ Arachis hypogaea HOM05D004464 ORTHO05D005135 3.7e-76 288.5 184 75.5
arahy.Tifrunner.gnm1.ann1.AQQ1ZC Arachis hypogaea HOM05D004464 ORTHO05D005135 3.7e-76 288.5 184 75.5
ATR0743G033 Amborella trichopoda HOM05D004464 ORTHO05D005135 4.8e-76 288.1 184 75.0
Peaxi162Scf01039g00131 Petunia axillaris HOM05D004464 ORTHO05D005135 4.8e-76 288.1 184 75.5
EL10Ac2g04433 Beta vulgaris HOM05D004464 ORTHO05D005135 6.2e-76 287.7 184 75.5
THA.LOC104820981 Tarenaya hassleriana HOM05D004464 ORTHO05D005135 6.2e-76 287.7 184 75.0
TWI75G1858 Tripterygium wilfordii HOM05D004464 ORTHO05D005135 6.2e-76 287.7 184 72.8
Ah.16g101000 Amaranthus hybridus HOM05D004464 ORTHO05D005135 3.1e-75 285.4 182 75.8
Medtr8g102530 Medicago truncatula HOM05D004464 ORTHO05D005135 5.3e-75 284.6 184 72.3
Ah.10g038200 Amaranthus hybridus HOM05D004464 ORTHO05D005135 1.2e-74 283.5 182 75.3
unitig_0.g1789 Utricularia gibba HOM05D004464 ORTHO05D005135 7.6e-74 280.8 184 73.4
Aa31LG11G13830 Aethionema arabicum HOM05D004464 ORTHO05D005135 1.7e-73 279.6 182 73.6
Aa31LG2G910 Aethionema arabicum HOM05D004464 ORTHO05D005135 2.9e-73 278.9 182 73.1
Aqoxy3G02935 Aquilegia oxysepala HOM05D004464 ORTHO05D005135 3.8e-73 278.5 184 71.2
AUR62023152 Chenopodium quinoa HOM05D004464 ORTHO05D005135 4.9e-73 278.1 184 73.9
A02p03200 Brassica napus HOM05D004464 ORTHO05D005135 8.4e-73 277.3 184 71.7
BraA02t05291Z Brassica rapa HOM05D004464 ORTHO05D005135 8.4e-73 277.3 184 71.7
CAN.G497.54 Capsicum annuum HOM05D004464 ORTHO05D005135 8.4e-73 277.3 184 72.8
Sp6g28370 Schrenkiella parvula HOM05D004464 ORTHO05D005135 8.4e-73 277.3 182 72.0
AT5G15750 Arabidopsis thaliana HOM05D004464 ORTHO05D005135 1.1e-72 276.9 184 71.7
BcaNung02202 Brassica carinata HOM05D004464 ORTHO05D005135 1.1e-72 276.9 184 70.7
AUR62009474 Chenopodium quinoa HOM05D004464 ORTHO05D005135 1.4e-72 276.6 184 73.4
ECA285G0012 Erigeron canadensis HOM05D004464 ORTHO05D005135 1.9e-72 276.2 185 71.4
AL6G26590 Arabidopsis lyrata HOM05D004464 ORTHO05D005135 2.5e-72 275.8 182 72.5
BcaB01g05028 Brassica carinata HOM05D004464 ORTHO05D005135 2.5e-72 275.8 184 70.1
A03p07340 Brassica napus HOM05D004464 ORTHO05D005135 3.2e-72 275.4 184 69.6
C03p08530 Brassica napus HOM05D004464 ORTHO05D005135 3.2e-72 275.4 184 69.6
vmacro18124 Vaccinium macrocarpon HOM05D004464 ORTHO05D005135 3.2e-72 275.4 183 74.3
BcaC03g18447 Brassica carinata HOM05D004464 ORTHO05D005135 4.2e-72 275.0 184 71.2
C02p07950 Brassica napus HOM05D004464 ORTHO05D005135 4.2e-72 275.0 184 71.2
BolC2t06718H Brassica oleracea HOM05D004464 ORTHO05D005135 4.2e-72 275.0 184 71.2
BraA03t10058Z Brassica rapa HOM05D004464 ORTHO05D005135 7.1e-72 274.2 184 69.0
Carub.0006s1390 Capsella rubella HOM05D004464 ORTHO05D005135 2.7e-71 272.3 182 71.4
CARHR197580 Cardamine hirsuta HOM05D004464 ORTHO05D005135 1.0e-70 270.4 182 70.9
Carub.0004s0609 Capsella rubella HOM05D004464 ORTHO05D005135 1.8e-70 269.6 182 71.4
PSO782G4050 Papaver somniferum HOM05D004464 ORTHO05D005135 6.7e-70 267.7 184 68.5
PSO198G0095 Papaver somniferum HOM05D004464 ORTHO05D005135 1.1e-69 266.9 184 68.5
Mapoly0007s0196 Marchantia polymorpha HOM05D004464 ORTHO05D005135 1.9e-69 266.2 184 66.8
Oeu033412.2 Olea europaea HOM05D004464 ORTHO05D005135 2.5e-69 265.8 229 59.4
PSO017G3712 Papaver somniferum HOM05D004464 ORTHO05D005135 2.8e-68 262.3 184 67.9
DCAR_010215 Daucus carota HOM05D004464 ORTHO05D005135 4.8e-68 261.5 220 60.9
SMO089G0012 Selaginella moellendorffii HOM05D004464 ORTHO05D005135 9.0e-67 257.3 184 65.2
SHI12226 Sapria himalayana HOM05D004464 ORTHO05D005135 4.5e-66 255.0 185 64.9
Haze_14377 Corylus avellana HOM05D004464 ORTHO05D005135 5.9e-66 254.6 191 70.2
MCO12G368 Micromonas commoda HOM05D004464 ORTHO05D005135 1.3e-65 253.4 184 65.2
Pp3c13_7750 Physcomitrium patens HOM05D004464 ORTHO05D005135 1.7e-65 253.1 184 63.6
Ca_17363_v3 Cicer arietinum L. HOM05D002451 ORTHO05D007901 3.8e-65 251.9 158 74.7
Duzib170G0747 Durio zibethinus HOM05D004464 ORTHO05D005135 5.0e-65 251.5 184 69.0
Nitab4.5_0009887g0020 Nicotiana tabacum HOM05D004464 ORTHO05D005135 2.7e-63 245.7 153 75.8
TAR629G1609 Trochodendron aralioides HOM05D004464 ORTHO05D005135 1.4e-62 243.4 157 74.5
Glyma.16G058000 Glycine max HOM05D004464 ORTHO05D005135 5.1e-62 241.5 153 75.2
Cre03.g170750 Chlamydomonas reinhardtii HOM05D004464 ORTHO05D005135 1.3e-60 236.9 186 60.2
Zm00001eb280020 Zea mays HOM05D004464 ORTHO05D005135 3.7e-60 235.3 186 63.4
Atru.chr5.3325 Acer truncatum HOM05D004464 ORTHO05D005135 6.3e-60 234.6 184 64.1
Lsat_1_v5_gn_3_96881 Lactuca sativa HOM05D004464 ORTHO05D005135 2.6e-58 229.2 185 63.2
PSO478G4867 Papaver somniferum HOM05D004464 ORTHO05D005135 2.5e-56 222.6 184 62.5
Thhalv10014794m.g Eutrema salsugineum HOM05D004464 ORTHO05D005135 7.9e-55 217.6 139 74.8
SEGI_12415 Sequoiadendron giganteum HOM05D004464 ORTHO05D005135 9.7e-53 210.7 139 71.9
Nn3g17540 Nelumbo nucifera HOM05D004464 ORTHO05D005135 1.7e-49 199.9 184 58.7
SMO302G0020 Selaginella moellendorffii HOM05D004464 ORTHO05D005135 3.2e-48 195.7 178 56.7
HPP92_025702 Vanilla planifolia HOM05D004464 ORTHO05D005135 7.2e-48 194.5 153 62.7
AagrBONN_evm.TU.Sc2ySwM_362.1773 Anthoceros agrestis HOM05D004464 ORTHO05D005135 2.3e-46 189.5 153 58.2
BcaNung00660 Brassica carinata HOM05D004464 ORTHO05D005135 3.0e-46 189.1 161 57.1
Gorai.007G357000 Gossypium raimondii HOM05D004464 ORTHO05D005135 5.7e-45 184.9 180 55.6
MELO3C000036.2 Cucumis melo HOM05D004464 ORTHO05D005135 3.1e-43 179.1 151 57.6
Cfa025099 Carpinus fangiana HOM05D002539 ORTHO05D005135 4.1e-43 178.7 186 45.7
Cpa.g.sc14.239 Carica papaya HOM05D004464 ORTHO05D005135 2.2e-41 172.9 103 79.6
Rhsim08G0077600 Rhododendron simsii HOM05D004464 ORTHO05D005135 1.1e-40 170.6 103 77.7
BcaNung00661 Brassica carinata HOM05D004464 ORTHO05D005135 9.4e-40 167.5 161 52.8
CBR_g26031 Chara braunii HOM05D004464 ORTHO05D005135 4.0e-38 162.2 135 59.3
Lju361C7T5 Lonicera japonica HOM05D004464 ORTHO05D005135 2.6e-37 159.5 101 71.3
Gorai.007G357200 Gossypium raimondii HOM05D004464 ORTHO05D005135 3.3e-37 159.1 100 73.0
Gorai.007G356600 Gossypium raimondii HOM05D004464 ORTHO05D005135 1.7e-36 156.8 101 72.3
ECA246G0747 Erigeron canadensis HOM05D004464 ORTHO05D005135 1.1e-35 154.1 111 66.7
AagrBONN_evm.TU.Sc2ySwM_344.90 Anthoceros agrestis HOM05D004464 ORTHO05D005135 2.9e-33 146.0 137 55.5
BolC3t13358H Brassica oleracea HOM05D004464 ORTHO05D005135 1.6e-31 140.2 109 58.7
Lju361A7T16 Lonicera japonica HOM05D004464 ORTHO05D005135 4.4e-29 132.1 81 79.0
Oeu003765.1 Olea europaea HOM05D007961 ORTHO05D005135 5.7e-29 131.7 76 81.6
MELO3C001556.2 Cucumis melo HOM05D004464 ORTHO05D005135 7.0e-27 124.8 81 75.3
BolC1t00394H Brassica oleracea HOM05D004464 ORTHO05D005135 2.9e-25 119.4 87 60.9
AagrBONN_evm.TU.Sc2ySwM_368.3154 Anthoceros agrestis HOM05D004464 ORTHO05D005135 3.6e-23 112.5 78 62.8
SHI12394 Sapria himalayana HOM05D004464 ORTHO05D005135 3.4e-21 105.9 109 51.4
SHI40216 Sapria himalayana HOM05D004464 ORTHO05D005135 1.4e-19 100.5 68 63.2
MELO3C000032.2 Cucumis melo HOM05D004464 ORTHO05D005135 1.2e-13 80.9 55 69.1
Thecc.01G298200 Theobroma cacao HOM05D004464 ORTHO05D005135 2.0e-13 80.1 109 45.0
C09p61360 Brassica napus HOM05D004464 ORTHO05D005135 3.7e-12 75.9 130 40.0
Ciclev10013599m.g Citrus clementina HOM05D001645 ORTHO05D001749 6.2e-07 58.5 121 30.6
MCO09G009 Micromonas commoda HOM05D001645 ORTHO05D001749 6.2e-07 58.5 142 25.4
Psat5g184520 Pisum sativum HOM05D001645 ORTHO05D001749 1.4e-06 57.4 163 27.6
SGA_v2.0_scaffold389G50577 Striga asiatica HOM05D001645 ORTHO05D001749 5.2e-06 55.5 163 27.6
SGA_v2.0_scaffold53G19422 Striga asiatica HOM05D001645 ORTHO05D001749 5.2e-06 55.5 163 27.6
SGA_v2.0_scaffold63G21662 Striga asiatica HOM05D001645 ORTHO05D001749 5.2e-06 55.5 163 27.6
Cre08.g359750 Chlamydomonas reinhardtii HOM05D001645 ORTHO05D001749 6.8e-06 55.1 159 23.9
SalBow1G4417 Salvia bowleyana HOM05D001645 ORTHO05D001749 6.8e-06 55.1 133 30.1
SalBow8G4344 Salvia bowleyana HOM05D001645 ORTHO05D001749 6.8e-06 55.1 133 30.1
VMungo1309G2077 Vigna mungo HOM05D001645 ORTHO05D001749 6.8e-06 55.1 148 29.7
Glyma.04G171400 Glycine max HOM05D001645 ORTHO05D001749 8.9e-06 54.7 133 29.3
Glyma.06G192500 Glycine max HOM05D001645 ORTHO05D001749 8.9e-06 54.7 133 29.3
Phvul.009G172300 Phaseolus vulgaris HOM05D001645 ORTHO05D001749 8.9e-06 54.7 133 29.3
Phvul.009G188600 Phaseolus vulgaris HOM05D001645 ORTHO05D001749 8.9e-06 54.7 133 29.3
Psat4g052040 Pisum sativum HOM05D001645 ORTHO05D001749 8.9e-06 54.7 163 27.0
Psat4g166920 Pisum sativum HOM05D001645 ORTHO05D001749 8.9e-06 54.7 163 27.0
Psat7g127080 Pisum sativum HOM05D001645 ORTHO05D001749 8.9e-06 54.7 163 27.0
VMungo0251G0977 Vigna mungo HOM05D001645 ORTHO05D001749 8.9e-06 54.7 133 29.3


User provided reference genes

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