Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.06G038600 Carya illinoinensis HOM05D005446 ORTHO05D006597 2.2e-82 308.9 155 100.0
Haze_00330 Corylus avellana HOM05D005446 ORTHO05D006597 2.0e-75 285.8 155 89.7
Cfa016130 Carpinus fangiana HOM05D005446 ORTHO05D006597 5.8e-75 284.3 155 89.0
Haze_23920 Corylus avellana HOM05D005446 ORTHO05D006597 2.9e-74 282.0 155 89.0
Dinv17279 Davidia involucrata HOM05D005446 ORTHO05D006597 2.4e-73 278.9 155 89.0
QL09p006048 Quercus lobata HOM05D005446 ORTHO05D006597 5.4e-73 277.7 154 88.3
Duzib151G0274 Durio zibethinus HOM05D005446 ORTHO05D006597 7.0e-73 277.3 155 85.8
COL.COLO4_20178 Corchorus olitorius HOM05D005446 ORTHO05D006597 2.0e-72 275.8 155 85.8
Manes.18G108200 Manihot esculenta HOM05D005446 ORTHO05D006597 3.5e-72 275.0 155 88.4
Thecc.04G200100 Theobroma cacao HOM05D005446 ORTHO05D006597 1.7e-71 272.7 155 83.2
GSVIVG01038676001 Vitis vinifera HOM05D005446 ORTHO05D006597 3.0e-71 271.9 155 87.1
Lj3A584T51 Lonicera japonica HOM05D005446 ORTHO05D006597 2.5e-70 268.9 155 83.9
Atru.chr12.2505 Acer truncatum HOM05D005446 ORTHO05D006597 4.3e-70 268.1 155 83.2
Actinidia08718 Actinidia chinensis HOM05D005446 ORTHO05D006597 7.3e-70 267.3 155 85.2
Lj1A1031T79 Lonicera japonica HOM05D005446 ORTHO05D006597 7.3e-70 267.3 155 83.2
Atru.chr12.2528 Acer truncatum HOM05D005446 ORTHO05D006597 9.5e-70 266.9 155 82.6
Gohir.A07G102600 Gossypium hirsutum HOM05D005446 ORTHO05D006597 9.5e-70 266.9 155 80.6
Gohir.D07G001000 Gossypium hirsutum HOM05D005446 ORTHO05D006597 9.5e-70 266.9 155 81.3
Potri.015G001200 Populus trichocarpa HOM05D005446 ORTHO05D006597 2.1e-69 265.8 155 85.2
Gorai.001G114700 Gossypium raimondii HOM05D005446 ORTHO05D006597 3.6e-69 265.0 155 80.0
CSS0004780 Camellia sinensis var. sinensis HOM05D005446 ORTHO05D006597 8.0e-69 263.8 155 84.5
Gorai.001G000500 Gossypium raimondii HOM05D005446 ORTHO05D006597 1.1e-68 263.5 155 80.0
Eucgr.K00477 Eucalyptus grandis HOM05D005446 ORTHO05D006597 2.3e-68 262.3 155 81.9
Eucgr.K00475 Eucalyptus grandis HOM05D005446 ORTHO05D006597 3.1e-68 261.9 155 82.6
Sabra15G0000700 Salix brachista HOM05D005446 ORTHO05D006597 4.0e-68 261.5 155 83.9
Oeu029325.1 Olea europaea HOM05D005446 ORTHO05D006597 5.2e-68 261.2 155 80.0
TWI18G0511 Tripterygium wilfordii HOM05D005446 ORTHO05D006597 5.2e-68 261.2 155 80.6
Eucgr.L02508 Eucalyptus grandis HOM05D005446 ORTHO05D006597 8.9e-68 260.4 155 81.9
Gohir.D07G106600 Gossypium hirsutum HOM05D005446 ORTHO05D006597 8.9e-68 260.4 155 78.7
MBI12_g19204_MAGBIO Magnolia biondii HOM05D005446 ORTHO05D006597 8.9e-68 260.4 155 81.9
Peaxi162Scf00192g00016 Petunia axillaris HOM05D005446 ORTHO05D006597 2.0e-67 259.2 155 78.1
Peaxi162Scf00038g02639 Petunia axillaris HOM05D005446 ORTHO05D006597 5.8e-67 257.7 155 77.4
Ciclev10006132m.g Citrus clementina HOM05D005446 ORTHO05D006597 9.8e-67 256.9 155 80.6
Rhsim03G0218300 Rhododendron simsii HOM05D005446 ORTHO05D006597 9.8e-67 256.9 155 81.3
Gohir.A03G015000 Gossypium hirsutum HOM05D005446 ORTHO05D006597 1.3e-66 256.5 155 80.0
TAR383G0718 Trochodendron aralioides HOM05D005446 ORTHO05D006597 1.3e-66 256.5 155 78.7
Sopen01g002260 Solanum pennellii HOM05D005446 ORTHO05D006597 2.2e-66 255.8 155 76.8
vmacro06473 Vaccinium macrocarpon HOM05D005446 ORTHO05D006597 3.7e-66 255.0 155 80.0
Nn1g09694 Nelumbo nucifera HOM05D005446 ORTHO05D006597 6.4e-66 254.2 155 79.4
EL10Ac3g05135 Beta vulgaris HOM05D005446 ORTHO05D006597 8.3e-66 253.8 155 76.8
Potri.015G001000 Populus trichocarpa HOM05D005446 ORTHO05D006597 1.4e-65 253.1 155 81.9
Glyma.14G188600 Glycine max HOM05D005446 ORTHO05D006597 4.1e-65 251.5 155 76.1
MSTRG.26955 Avicennia marina HOM05D005446 ORTHO05D006597 5.4e-65 251.1 155 77.4
CSS0007128 Camellia sinensis var. sinensis HOM05D005446 ORTHO05D006597 7.0e-65 250.8 156 80.8
CSS0045409 Camellia sinensis var. sinensis HOM05D005446 ORTHO05D006597 7.0e-65 250.8 156 80.8
Glyma.02G221100 Glycine max HOM05D005446 ORTHO05D006597 9.2e-65 250.4 155 74.8
Cpa.g.sc3.182 Carica papaya HOM05D005446 ORTHO05D006597 1.2e-64 250.0 155 76.8
PGSC0003DMG400032145 Solanum tuberosum HOM05D005446 ORTHO05D006597 1.2e-64 250.0 155 74.8
AUR62028113 Chenopodium quinoa HOM05D005446 ORTHO05D006597 1.0e-63 246.9 155 73.5
AUR62005952 Chenopodium quinoa HOM05D005446 ORTHO05D006597 1.3e-63 246.5 155 74.2
CANSAT64G2376 Cannabis sativa HOM05D005446 ORTHO05D006597 1.7e-63 246.1 155 77.4
FvH4_7g33290 Fragaria vesca HOM05D005446 ORTHO05D006597 3.9e-63 245.0 155 76.1
Cc02_g16080 Coffea canephora HOM05D005446 ORTHO05D006597 6.6e-63 244.2 155 76.1
FAN01G0680 Fragaria x ananassa HOM05D005446 ORTHO05D006597 6.6e-63 244.2 155 76.1
FAN10G1830 Fragaria x ananassa HOM05D005446 ORTHO05D006597 1.5e-62 243.0 155 75.5
Hund09744 Selenicereus undatus HOM05D005446 ORTHO05D006597 1.5e-62 243.0 155 74.2
Prupe.2G321800 Prunus persica HOM05D005446 ORTHO05D006597 1.9e-62 242.7 155 76.1
RcHm_v2.0_Chr1g0383271 Rosa chinensis HOM05D005446 ORTHO05D006597 1.9e-62 242.7 155 76.8
FAN03G2203 Fragaria x ananassa HOM05D005446 ORTHO05D006597 3.3e-62 241.9 155 75.5
PSO782G3129 Papaver somniferum HOM05D005446 ORTHO05D006597 4.3e-62 241.5 155 74.2
Lalb_Chr10g0102991 Lupinus albus HOM05D005446 ORTHO05D006597 7.3e-62 240.7 155 74.2
PSO170G1626 Papaver somniferum HOM05D005446 ORTHO05D006597 9.5e-62 240.4 155 73.5
unitig_0.g2433 Utricularia gibba HOM05D005446 ORTHO05D006597 1.2e-61 240.0 155 74.2
MD07G1303100 Malus domestica HOM05D005446 ORTHO05D006597 2.1e-61 239.2 155 74.8
Migut.F00126 Erythranthe guttata HOM05D005446 ORTHO05D006597 6.2e-61 237.7 155 74.2
SGA_v2.0_scaffold44G16871 Striga asiatica HOM05D005446 ORTHO05D006597 1.1e-60 236.9 174 67.8
CAN.G140.1 Capsicum annuum HOM05D005446 ORTHO05D006597 1.4e-60 236.5 155 71.0
LjContig00155g0018941 Lotus japonicus HOM05D005446 ORTHO05D006597 1.4e-60 236.5 155 72.3
Solyc01g006260.4 Solanum lycopersicum HOM05D005446 ORTHO05D006597 1.8e-60 236.1 145 75.9
Phvul.001G010300 Phaseolus vulgaris HOM05D005446 ORTHO05D006597 2.3e-60 235.7 155 72.9
Phvul.008G188200 Phaseolus vulgaris HOM05D005446 ORTHO05D006597 2.3e-60 235.7 155 72.9
Ca_05549_v3 Cicer arietinum L. HOM05D005446 ORTHO05D006597 3.1e-60 235.3 152 73.7
ECA247G1253 Erigeron canadensis HOM05D005446 ORTHO05D006597 3.1e-60 235.3 155 72.3
Phvul.L008700 Phaseolus vulgaris HOM05D005446 ORTHO05D006597 1.2e-59 233.4 155 72.3
ClCG09G010380 Citrullus lanatus HOM05D005446 ORTHO05D006597 2.6e-59 232.3 155 72.9
Phvul.003G000356 Phaseolus vulgaris HOM05D005446 ORTHO05D006597 2.6e-59 232.3 155 72.3
RcHm_v2.0_Chr3g0479561 Rosa chinensis HOM05D005446 ORTHO05D006597 2.6e-59 232.3 155 74.8
Sed0027394 Sechium edule HOM05D005446 ORTHO05D006597 2.6e-59 232.3 155 72.3
Aqoxy5G00887 Aquilegia oxysepala HOM05D005446 ORTHO05D006597 4.4e-59 231.5 152 72.4
DCAR_008034 Daucus carota HOM05D005446 ORTHO05D006597 5.8e-59 231.1 153 71.9
TAR629G0354 Trochodendron aralioides HOM05D005446 ORTHO05D006597 5.8e-59 231.1 145 77.9
HanXRQChr02g0037361 Helianthus annuus HOM05D005446 ORTHO05D006597 7.5e-59 230.7 155 71.6
Medtr5g068650 Medicago truncatula HOM05D005446 ORTHO05D006597 1.3e-58 229.9 152 71.7
Ah.13g071020 Amaranthus hybridus HOM05D005446 ORTHO05D006597 1.7e-58 229.6 214 57.5
CDE07G1092 Ceratophyllum demersum HOM05D005446 ORTHO05D006597 2.9e-58 228.8 155 68.4
QL04p035447 Quercus lobata HOM05D005446 ORTHO05D006597 4.9e-58 228.0 146 80.8
Aa31LG10G6780 Aethionema arabicum HOM05D005446 ORTHO05D006597 6.4e-58 227.6 154 70.1
MELO3C023673.2 Cucumis melo HOM05D005446 ORTHO05D006597 6.4e-58 227.6 155 72.9
CsaV3_7G024240 Cucumis sativus L. HOM05D005446 ORTHO05D006597 8.3e-58 227.3 155 72.3
Nitab4.5_0005132g0070 Nicotiana tabacum HOM05D005446 ORTHO05D006597 8.3e-58 227.3 146 74.0
VMungo0647G1380 Vigna mungo HOM05D005446 ORTHO05D006597 1.4e-57 226.5 147 73.5
Eucgr.K00052 Eucalyptus grandis HOM05D005446 ORTHO05D006597 3.2e-57 225.3 150 76.0
Lsat_1_v5_gn_1_26901 Lactuca sativa HOM05D005446 ORTHO05D006597 3.2e-57 225.3 155 70.3
AL1G14320 Arabidopsis lyrata HOM05D005446 ORTHO05D006597 4.1e-57 224.9 156 70.5
HanXRQChr02g0037371 Helianthus annuus HOM05D005446 ORTHO05D006597 9.2e-57 223.8 151 71.5
CARHR003990 Cardamine hirsuta HOM05D005446 ORTHO05D006597 2.1e-56 222.6 156 69.9
MD01G1231100 Malus domestica HOM05D005446 ORTHO05D006597 2.1e-56 222.6 147 74.1
ATR0579G170 Amborella trichopoda HOM05D005446 ORTHO05D006597 2.7e-56 222.2 147 71.4
Carub.0001s0387 Capsella rubella HOM05D005446 ORTHO05D006597 2.7e-56 222.2 156 69.9
AT1G04635 Arabidopsis thaliana HOM05D005446 ORTHO05D006597 4.6e-56 221.5 156 69.9
Eucgr.K00059 Eucalyptus grandis HOM05D005446 ORTHO05D006597 6.0e-56 221.1 150 75.3
TPR.G5849 Trifolium pratense HOM05D005446 ORTHO05D006597 1.1e-54 216.9 152 69.7
Nitab4.5_0022559g0010 Nicotiana tabacum HOM05D005446 ORTHO05D006597 5.6e-54 214.5 127 78.7
HPP92_023794 Vanilla planifolia HOM05D005446 ORTHO05D006597 1.6e-53 213.0 155 64.5
DCAR_019328 Daucus carota HOM05D005446 ORTHO05D006597 1.1e-52 210.3 133 75.2
Thhalv10009004m.g Eutrema salsugineum HOM05D005446 ORTHO05D006597 1.4e-52 209.9 156 64.7
MD07G1302900 Malus domestica HOM05D005446 ORTHO05D006597 1.4e-52 209.9 155 69.0
Zm00001eb200370 Zea mays HOM05D005446 ORTHO05D006597 1.5e-51 206.5 153 63.4
SHI13471 Sapria himalayana HOM05D005446 ORTHO05D006597 8.4e-50 200.7 188 56.4
THA.LOC104820657 Tarenaya hassleriana HOM05D005446 ORTHO05D006597 1.9e-49 199.5 156 62.2
A10p03070 Brassica napus HOM05D002401 ORTHO05D007109 3.5e-48 195.3 154 59.1
BolC5t29066H Brassica oleracea HOM05D002401 ORTHO05D007109 3.5e-48 195.3 154 59.7
C05p02830 Brassica napus HOM05D002401 ORTHO05D007109 4.6e-48 194.9 154 59.7
Sp4g14630 Schrenkiella parvula HOM05D005446 ORTHO05D006597 6.0e-48 194.5 152 59.9
BraA10t42580Z Brassica rapa HOM05D002401 ORTHO05D007109 1.7e-47 193.0 154 59.1
Thhalv10017414m.g Eutrema salsugineum HOM05D005446 ORTHO05D006597 5.1e-47 191.4 128 68.0
Os04g0295100 Oryza sativa ssp. japonica HOM05D005446 ORTHO05D006597 1.5e-46 189.9 163 59.5
Os05g0270500 Oryza sativa ssp. japonica HOM05D005446 ORTHO05D006597 1.5e-46 189.9 148 61.5
Sp1g03470 Schrenkiella parvula HOM05D005446 ORTHO05D006597 3.3e-46 188.7 153 58.2
PGR142G4477 Punica granatum HOM05D005446 ORTHO05D006597 1.5e-43 179.9 153 58.2
TAR362G0055 Trochodendron aralioides HOM05D005446 ORTHO05D006597 1.5e-43 179.9 114 76.3
Psat2g060440 Pisum sativum HOM05D005446 ORTHO05D006597 3.4e-43 178.7 146 60.3
QL09p006020 Quercus lobata HOM05D005446 ORTHO05D006597 1.0e-39 167.2 91 89.0
Sc13g0010680 Simmondsia chinensis HOM05D005446 ORTHO05D006597 3.9e-39 165.2 99 79.8
Ciclev10023849m.g Citrus clementina HOM05D005446 ORTHO05D006597 5.1e-39 164.9 103 76.7
arahy.Tifrunner.gnm1.ann1.PTVQ9K Arachis hypogaea HOM05D005446 ORTHO05D006597 8.7e-39 164.1 109 68.8
arahy.Tifrunner.gnm1.ann1.G1Q0KH Arachis hypogaea HOM05D005446 ORTHO05D006597 1.1e-38 163.7 109 69.7
FAN10G3034 Fragaria x ananassa HOM05D005446 ORTHO05D006597 9.6e-38 160.6 104 74.0
SEGI_01150 Sequoiadendron giganteum HOM05D005446 ORTHO05D006597 1.7e-34 149.8 144 49.3
QL09p006057 Quercus lobata HOM05D000605 ORTHO05D001937 2.2e-34 149.4 83 88.0
Oeu055421.1 Olea europaea HOM05D005446 ORTHO05D006597 4.6e-32 141.7 109 64.2
CDE05G0789 Ceratophyllum demersum HOM05D002553 ORTHO05D002767 3.7e-29 132.1 144 49.3
AagrBONN_evm.TU.Sc2ySwM_117.1519 Anthoceros agrestis HOM05D005446 ORTHO05D006597 1.4e-28 130.2 153 43.1
Pp3c14_9250 Physcomitrium patens HOM05D005446 ORTHO05D006597 1.5e-27 126.7 128 50.8
TPR.G27917 Trifolium pratense HOM05D005446 ORTHO05D006597 1.5e-27 126.7 152 48.0
SMO356G0648 Selaginella moellendorffii HOM05D005446 ORTHO05D006597 1.6e-21 106.7 153 39.2
Phvul.003G000382 Phaseolus vulgaris HOM05D005446 ORTHO05D006597 3.1e-20 102.4 61 77.0
Phvul.L006525 Phaseolus vulgaris HOM05D005446 ORTHO05D006597 3.1e-20 102.4 61 77.0
Mapoly0096s0024 Marchantia polymorpha HOM05D005446 ORTHO05D006597 4.0e-20 102.1 128 43.8
Psat2g148960 Pisum sativum HOM05D005446 ORTHO05D006597 5.5e-17 91.7 50 82.0
Phvul.L004350 Phaseolus vulgaris HOM05D005446 ORTHO05D006597 1.8e-15 86.7 68 63.2
Cre01.g026100 Chlamydomonas reinhardtii HOM05D005446 ORTHO05D006597 1.5e-14 83.6 131 35.1
MELO3C018158.2 Cucumis melo HOM05D005446 ORTHO05D006597 7.4e-14 81.3 68 61.8
MCO15G566 Micromonas commoda HOM05D005446 ORTHO05D006597 1.7e-10 70.1 117 31.6


User provided reference genes

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