Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.06G031900 Carya illinoinensis HOM05D002509 ORTHO05D002758 3.2e-46 188.0 89 100.0
CiPaw.05G220300 Carya illinoinensis HOM05D002509 ORTHO05D002758 6.3e-42 173.7 89 88.8
Cfa016032 Carpinus fangiana HOM05D002509 ORTHO05D002758 1.4e-41 172.6 89 88.8
Haze_00426 Corylus avellana HOM05D002509 ORTHO05D002758 1.4e-41 172.6 89 88.8
QL09p024057 Quercus lobata HOM05D002509 ORTHO05D002758 2.4e-41 171.8 88 88.6
Prupe.2G325800 Prunus persica HOM05D002509 ORTHO05D002758 1.0e-39 166.4 88 87.5
CiPaw.05G220600 Carya illinoinensis HOM05D002509 ORTHO05D002758 2.2e-39 165.2 89 85.4
QL09p024426 Quercus lobata HOM05D002509 ORTHO05D002758 7.2e-38 160.2 88 83.0
Dinv03343 Davidia involucrata HOM05D002509 ORTHO05D002758 2.1e-37 158.7 89 83.1
Dinv29099 Davidia involucrata HOM05D002509 ORTHO05D002758 4.7e-37 157.5 89 83.1
ClCG10G009090 Citrullus lanatus HOM05D002509 ORTHO05D002758 8.0e-37 156.8 90 82.2
CsaV3_4G009290 Cucumis sativus L. HOM05D002509 ORTHO05D002758 2.3e-36 155.2 90 82.2
MELO3C019031.2 Cucumis melo HOM05D002509 ORTHO05D002758 5.2e-36 154.1 90 81.1
Sabra06G0098300 Salix brachista HOM05D002509 ORTHO05D002758 5.2e-36 154.1 89 83.1
Thecc.05G067400 Theobroma cacao HOM05D002509 ORTHO05D002758 5.2e-36 154.1 89 84.3
TWI74G0772 Tripterygium wilfordii HOM05D002509 ORTHO05D002758 5.2e-36 154.1 89 80.9
Sed0012655 Sechium edule HOM05D002509 ORTHO05D002758 1.1e-35 152.9 90 82.2
Gorai.002G247000 Gossypium raimondii HOM05D002509 ORTHO05D002758 3.3e-35 151.4 89 84.3
MD07G1308600 Malus domestica HOM05D002509 ORTHO05D002758 5.7e-35 150.6 89 82.0
Nn2g13788 Nelumbo nucifera HOM05D002509 ORTHO05D002758 7.4e-35 150.2 89 79.8
Gohir.A01G213600 Gossypium hirsutum HOM05D002509 ORTHO05D002758 9.7e-35 149.8 89 83.1
TWI53G1670 Tripterygium wilfordii HOM05D002509 ORTHO05D002758 9.7e-35 149.8 89 79.8
Potri.006G124200 Populus trichocarpa HOM05D002509 ORTHO05D002758 1.3e-34 149.4 89 82.0
Gohir.A09G146400 Gossypium hirsutum HOM05D002509 ORTHO05D002758 1.7e-34 149.1 89 83.1
Gohir.D09G142100 Gossypium hirsutum HOM05D002509 ORTHO05D002758 1.7e-34 149.1 89 82.0
Gorai.006G163100 Gossypium raimondii HOM05D002509 ORTHO05D002758 1.7e-34 149.1 89 82.0
Manes.09G066000 Manihot esculenta HOM05D002509 ORTHO05D002758 2.2e-34 148.7 89 78.7
Atru.chr8.1799 Acer truncatum HOM05D002509 ORTHO05D002758 2.8e-34 148.3 89 78.7
Eucgr.A01674 Eucalyptus grandis HOM05D002509 ORTHO05D002758 3.7e-34 147.9 89 79.8
RcHm_v2.0_Chr1g0384181 Rosa chinensis HOM05D002509 ORTHO05D002758 3.7e-34 147.9 92 79.3
Gohir.D01G202300 Gossypium hirsutum HOM05D002509 ORTHO05D002758 4.8e-34 147.5 89 83.1
COL.COLO4_26959 Corchorus olitorius HOM05D002509 ORTHO05D002758 6.3e-34 147.1 89 79.8
Peaxi162Scf00003g04919 Petunia axillaris HOM05D002509 ORTHO05D002758 1.1e-33 146.4 89 78.7
GSVIVG01025739001 Vitis vinifera HOM05D002509 ORTHO05D002758 1.4e-33 146.0 89 80.9
Rhsim02G0071500 Rhododendron simsii HOM05D002509 ORTHO05D002758 1.8e-33 145.6 89 80.9
CiPaw.06G032400 Carya illinoinensis HOM05D002509 ORTHO05D002758 5.3e-33 144.1 70 95.7
Ca_04920_v3 Cicer arietinum L. HOM05D002509 ORTHO05D002758 1.6e-32 142.5 89 79.8
Cc06_g19290 Coffea canephora HOM05D002509 ORTHO05D002758 1.6e-32 142.5 89 76.4
Duzib128G1563 Durio zibethinus HOM05D002509 ORTHO05D002758 2.0e-32 142.1 89 78.7
MD01G1235700 Malus domestica HOM05D002509 ORTHO05D002758 2.0e-32 142.1 88 75.0
TAR623G1280 Trochodendron aralioides HOM05D002509 ORTHO05D002758 2.0e-32 142.1 89 76.4
Sabra16G0098500 Salix brachista HOM05D002509 ORTHO05D002758 2.6e-32 141.7 87 78.2
Manes.08G010800 Manihot esculenta HOM05D002509 ORTHO05D002758 3.5e-32 141.4 90 78.9
arahy.Tifrunner.gnm1.ann1.46VCLG Arachis hypogaea HOM05D002509 ORTHO05D002758 1.0e-31 139.8 87 79.3
arahy.Tifrunner.gnm1.ann1.8BD1V8 Arachis hypogaea HOM05D002509 ORTHO05D002758 1.0e-31 139.8 87 79.3
Duzib093G0938 Durio zibethinus HOM05D002509 ORTHO05D002758 1.0e-31 139.8 89 78.7
Potri.016G093200 Populus trichocarpa HOM05D002509 ORTHO05D002758 1.3e-31 139.4 90 78.9
Duzib106G0487 Durio zibethinus HOM05D002509 ORTHO05D002758 1.7e-31 139.0 89 79.8
TPR.G27184 Trifolium pratense HOM05D002509 ORTHO05D002758 2.2e-31 138.7 91 76.9
Phvul.011G020500 Phaseolus vulgaris HOM05D002509 ORTHO05D002758 2.9e-31 138.3 89 77.5
Ciclev10012088m.g Citrus clementina HOM05D002509 ORTHO05D002758 6.5e-31 137.1 90 74.4
FAN10G0165 Fragaria x ananassa HOM05D002509 ORTHO05D002758 8.5e-31 136.7 110 65.5
Medtr4g077797 Medicago truncatula HOM05D002509 ORTHO05D002758 1.1e-30 136.3 91 78.0
DCAR_014999 Daucus carota HOM05D002509 ORTHO05D002758 2.5e-30 135.2 90 73.3
VMungo1127G1098 Vigna mungo HOM05D002509 ORTHO05D002758 2.5e-30 135.2 89 75.3
Actinidia28937 Actinidia chinensis HOM05D002509 ORTHO05D007656 3.2e-30 134.8 91 78.0
FAN01G1274 Fragaria x ananassa HOM05D002509 ORTHO05D002758 3.2e-30 134.8 110 64.5
FAN03G1495 Fragaria x ananassa HOM05D002509 ORTHO05D002758 3.2e-30 134.8 110 64.5
Oeu057786.1 Olea europaea HOM05D002509 ORTHO05D002758 3.2e-30 134.8 89 71.9
Medtr4g077803 Medicago truncatula HOM05D002509 ORTHO05D002758 4.2e-30 134.4 89 75.3
Actinidia26634 Actinidia chinensis HOM05D002509 ORTHO05D002758 5.5e-30 134.0 91 76.9
Glyma.11G091900 Glycine max HOM05D002509 ORTHO05D002758 7.2e-30 133.7 89 77.5
MSTRG.26160 Avicennia marina HOM05D002509 ORTHO05D002758 2.7e-29 131.7 93 71.0
TAR636G1397 Trochodendron aralioides HOM05D002509 ORTHO05D002758 2.7e-29 131.7 89 73.0
TPR.G27186 Trifolium pratense HOM05D002509 ORTHO05D002758 1.0e-28 129.8 89 71.9
CAN.G960.59 Capsicum annuum HOM05D002509 ORTHO05D002758 1.4e-28 129.4 94 74.5
Solyc10g078430.2 Solanum lycopersicum HOM05D002509 ORTHO05D002758 1.8e-28 129.0 91 70.3
Sopen10g029090 Solanum pennellii HOM05D002509 ORTHO05D002758 1.8e-28 129.0 91 70.3
LjContig00247g0023433 Lotus japonicus HOM05D002509 ORTHO05D002758 2.3e-28 128.6 90 74.4
Nitab4.5_0004588g0040 Nicotiana tabacum HOM05D002509 ORTHO05D002758 3.0e-28 128.3 93 71.0
PGSC0003DMG400008373 Solanum tuberosum HOM05D002509 ORTHO05D002758 3.0e-28 128.3 91 69.2
arahy.Tifrunner.gnm1.ann1.GCS8UL Arachis hypogaea HOM05D002509 ORTHO05D002758 4.0e-28 127.9 89 73.0
Cpa.g.c44644 Carica papaya HOM05D002509 ORTHO05D002758 5.2e-28 127.5 79 77.2
Lj1g0014330 Lotus japonicus HOM05D002509 ORTHO05D002758 6.7e-28 127.1 90 73.3
Hma1.2p1_2076F.1_g313320 Hydrangea macrophylla HOM05D002509 ORTHO05D002758 8.8e-28 126.7 90 74.4
Lj2A121T44 Lonicera japonica HOM05D002509 ORTHO05D002758 1.2e-27 126.3 91 71.4
Lalb_Chr19g0139961 Lupinus albus HOM05D002509 ORTHO05D002758 1.5e-27 125.9 89 73.0
Psat7g171840 Pisum sativum HOM05D002509 ORTHO05D002758 1.5e-27 125.9 89 73.0
Aqoxy2G01751 Aquilegia oxysepala HOM05D002509 ORTHO05D002758 2.0e-27 125.6 90 70.0
Nitab4.5_0000812g0100 Nicotiana tabacum HOM05D002509 ORTHO05D002758 2.6e-27 125.2 93 71.0
SalBow1G1286 Salvia bowleyana HOM05D002509 ORTHO05D002758 4.4e-27 124.4 87 71.3
SalBow1G2356 Salvia bowleyana HOM05D002509 ORTHO05D002758 4.4e-27 124.4 87 71.3
Lj3A986G81 Lonicera japonica HOM05D002509 ORTHO05D002758 7.5e-27 123.6 89 69.7
Ca_04919_v3 Cicer arietinum L. HOM05D002509 ORTHO05D002758 1.3e-26 122.9 89 70.8
Glyma.12G018000 Glycine max HOM05D002509 ORTHO05D002758 1.7e-26 122.5 81 76.5
Oeu059350.2 Olea europaea HOM05D002509 ORTHO05D002758 3.7e-26 121.3 89 70.8
Lalb_Chr09g0320211 Lupinus albus HOM05D002509 ORTHO05D002758 6.3e-26 120.6 90 71.1
Lalb_Chr01g0000931 Lupinus albus HOM05D002509 ORTHO05D002758 1.1e-25 119.8 89 69.7
Aqoxy1G01153 Aquilegia oxysepala HOM05D002509 ORTHO05D002758 1.8e-25 119.0 89 67.4
PGR142G2449 Punica granatum HOM05D002509 ORTHO05D002758 2.4e-25 118.6 91 65.9
Lj1g0005313 Lotus japonicus HOM05D002509 ORTHO05D002758 3.1e-25 118.2 89 69.7
Migut.J01656 Erythranthe guttata HOM05D002509 ORTHO05D002758 7.0e-25 117.1 91 68.1
SGA_v2.0_scaffold105G30291 Striga asiatica HOM05D002509 ORTHO05D002758 3.5e-24 114.8 91 67.0
MBI14_g36920_MAGBIO Magnolia biondii HOM05D002509 ORTHO05D002758 4.5e-24 114.4 89 67.4
SGA_v2.0_scaffold273G46397 Striga asiatica HOM05D002509 ORTHO05D002758 5.9e-24 114.0 89 65.2
HPP92_008487 Vanilla planifolia HOM05D002509 ORTHO05D002758 7.7e-24 113.6 91 64.8
PSO063G1007 Papaver somniferum HOM05D002509 ORTHO05D002758 2.2e-23 112.1 88 63.6
Oeu059351.1 Olea europaea HOM05D002509 ORTHO05D002758 3.8e-23 111.3 83 69.9
DCAR_017679 Daucus carota HOM05D002509 ORTHO05D002758 1.5e-22 109.4 88 68.2
Ca_25109_v3 Cicer arietinum L. HOM05D002509 ORTHO05D002758 3.2e-22 108.2 78 66.7
PSO801G0281 Papaver somniferum HOM05D002509 ORTHO05D002758 3.2e-22 108.2 95 60.0
Nn2g11606 Nelumbo nucifera HOM05D002509 ORTHO05D002758 4.2e-22 107.8 73 74.0
PSO339G6281 Papaver somniferum HOM05D002509 ORTHO05D002758 4.2e-22 107.8 87 62.1
HanXRQChr02g0051671 Helianthus annuus HOM05D002509 ORTHO05D002758 5.5e-22 107.5 90 65.6
Phvul.002G039800 Phaseolus vulgaris HOM05D002509 ORTHO05D002758 5.5e-22 107.5 89 65.2
Migut.K00137 Erythranthe guttata HOM05D002509 ORTHO05D002758 7.2e-22 107.1 89 64.0
PSO339G4012 Papaver somniferum HOM05D002509 ORTHO05D002758 1.2e-21 106.3 95 58.9
PGR004G1629 Punica granatum HOM05D002509 ORTHO05D002758 1.2e-21 106.3 93 63.4
Hund02786 Selenicereus undatus HOM05D002509 ORTHO05D002758 1.2e-21 106.3 118 52.5
Ah.11g051170 Amaranthus hybridus HOM05D002509 ORTHO05D002758 1.6e-21 105.9 130 46.2
ECA233G1525 Erigeron canadensis HOM05D002509 ORTHO05D002758 2.7e-21 105.1 89 65.2
Zm00001eb004190 Zea mays HOM05D002509 ORTHO05D002758 1.0e-20 103.2 90 57.8
DCAR_020815 Daucus carota HOM05D002509 ORTHO05D002758 1.8e-20 102.4 83 66.3
HPP92_005094 Vanilla planifolia HOM05D002509 ORTHO05D002758 2.3e-20 102.1 88 56.8
HanXRQChr13g0401001 Helianthus annuus HOM05D002509 ORTHO05D002758 5.2e-20 100.9 89 59.6
Lsat_1_v5_gn_1_52320 Lactuca sativa HOM05D002509 ORTHO05D002758 6.8e-20 100.5 89 60.7
Zm00001eb403140 Zea mays HOM05D002509 ORTHO05D002758 1.2e-19 99.8 88 59.1
ATR0219G016 Amborella trichopoda HOM05D002509 ORTHO05D002758 1.5e-19 99.4 92 59.8
Actinidia20629 Actinidia chinensis HOM05D002509 ORTHO05D002758 5.7e-19 97.4 68 69.1
SalBow6G5888 Salvia bowleyana HOM05D002509 ORTHO05D002758 5.7e-19 97.4 88 56.8
EL10Ac5g10657 Beta vulgaris HOM05D002509 ORTHO05D002758 1.7e-18 95.9 131 44.3
AUR62008146 Chenopodium quinoa HOM05D002509 ORTHO05D002758 4.8e-18 94.4 131 43.5
MBI18_g36549_MAGBIO Magnolia biondii HOM05D002509 ORTHO05D002758 4.8e-18 94.4 77 58.4
CDE10G0268 Ceratophyllum demersum HOM05D002509 ORTHO05D002758 1.4e-17 92.8 90 54.4
CANSAT56G3595 Cannabis sativa HOM05D002509 ORTHO05D002758 3.1e-17 91.7 87 63.2
Os10g0440100 Oryza sativa ssp. japonica HOM05D002509 ORTHO05D002758 3.1e-17 91.7 90 58.9
unitig_46.g18436 Utricularia gibba HOM05D002509 ORTHO05D002758 4.1e-17 91.3 90 56.7
AUR62028728 Chenopodium quinoa HOM05D002509 ORTHO05D002758 5.4e-17 90.9 131 43.5
ECA248G1100 Erigeron canadensis HOM05D002509 ORTHO05D002758 5.4e-17 90.9 90 54.4
FvH4_7g33950 Fragaria vesca HOM05D002509 ORTHO05D002758 9.1e-17 90.1 93 55.9
Ah.02g110850 Amaranthus hybridus HOM05D002509 ORTHO05D002758 1.2e-16 89.7 132 43.9
Sc04g0001520 Simmondsia chinensis HOM05D002509 ORTHO05D002758 2.0e-16 89.0 90 55.6
Aa31LG1G21740 Aethionema arabicum HOM05D002509 ORTHO05D002758 3.5e-16 88.2 108 47.2
Lsat_1_v5_gn_6_24981 Lactuca sativa HOM05D002509 ORTHO05D002758 3.5e-16 88.2 84 59.5
CDE10G0407 Ceratophyllum demersum HOM05D002509 ORTHO05D002758 4.5e-16 87.8 90 51.1
Glyma.01G228100 Glycine max HOM05D002509 ORTHO05D002758 4.5e-16 87.8 89 58.4
THA.LOC104826915 Tarenaya hassleriana HOM05D002509 ORTHO05D002758 1.0e-15 86.7 106 50.0
TAR633G1413 Trochodendron aralioides HOM05D002509 ORTHO05D002758 1.0e-15 86.7 58 70.7
SGA_v2.0_scaffold94G28542 Striga asiatica HOM05D002509 ORTHO05D002758 1.7e-15 85.9 90 62.2
THA.LOC104816350 Tarenaya hassleriana HOM05D002509 ORTHO05D002758 1.7e-15 85.9 94 57.4
SEGI_10652 Sequoiadendron giganteum HOM05D002509 ORTHO05D002758 1.5e-14 82.8 103 50.5
Pp3c13_21530 Physcomitrium patens HOM05D002509 ORTHO05D002758 3.3e-14 81.6 103 43.7
C03p01500 Brassica napus HOM05D002509 ORTHO05D002758 5.5e-14 80.9 98 48.0
Pp3c3_11980 Physcomitrium patens HOM05D002509 ORTHO05D002758 9.5e-14 80.1 103 47.6
BcaB01g05840 Brassica carinata HOM05D002509 ORTHO05D002758 1.6e-13 79.3 117 43.6
BolC3t12704H Brassica oleracea HOM05D002509 ORTHO05D002758 1.6e-13 79.3 117 43.6
CARHR209930 Cardamine hirsuta HOM05D002509 ORTHO05D002758 3.6e-13 78.2 121 46.3
A03p01160 Brassica napus HOM05D002509 ORTHO05D002758 8.0e-13 77.0 117 44.4
BraA03t09498Z Brassica rapa HOM05D002509 ORTHO05D002758 8.0e-13 77.0 116 43.1
SEGI_09093 Sequoiadendron giganteum HOM05D002509 ORTHO05D002758 8.0e-13 77.0 104 51.0
Sp6g39330 Schrenkiella parvula HOM05D002509 ORTHO05D002758 1.0e-12 76.6 125 41.6
SMO356G0328 Selaginella moellendorffii HOM05D002509 ORTHO05D002758 3.0e-12 75.1 99 49.5
TPR.G9630 Trifolium pratense HOM05D000096 ORTHO05D000045 4.0e-12 74.7 81 48.1
Glyma.11G010800 Glycine max HOM05D002509 ORTHO05D002758 5.2e-12 74.3 89 49.4
Mapoly0050s0010 Marchantia polymorpha HOM05D002509 ORTHO05D002758 5.2e-12 74.3 103 46.6
VMungo1215G2597 Vigna mungo HOM05D002509 ORTHO05D002758 5.2e-12 74.3 89 49.4
unitig_37.g12698 Utricularia gibba HOM05D002509 ORTHO05D002758 8.9e-12 73.6 83 50.6
SGA_v2.0_scaffold69G23151 Striga asiatica HOM05D002509 ORTHO05D002758 1.2e-11 73.2 55 63.6
AT5G03415 Arabidopsis thaliana HOM05D002509 ORTHO05D002758 1.5e-11 72.8 121 38.0
BcaC06g32057 Brassica carinata HOM05D002509 ORTHO05D002758 2.0e-11 72.4 41 75.6
BcaB05g21837 Brassica carinata HOM05D002509 ORTHO05D002758 5.7e-11 70.9 99 48.5
BcaB01g05822 Brassica carinata HOM05D002509 ORTHO05D002758 1.3e-10 69.7 122 41.0
A10p32590 Brassica napus HOM05D002509 ORTHO05D002758 1.3e-10 69.7 103 45.6
BolC9t60075H Brassica oleracea HOM05D002509 ORTHO05D002758 1.3e-10 69.7 39 79.5
AL6G12740 Arabidopsis lyrata HOM05D002509 ORTHO05D002758 1.7e-10 69.3 41 73.2
arahy.Tifrunner.gnm1.ann1.184WBH Arachis hypogaea HOM05D002509 ORTHO05D002758 1.7e-10 69.3 54 66.7
PSO063G3553 Papaver somniferum HOM05D002509 ORTHO05D002758 1.7e-10 69.3 60 56.7
C09p73390 Brassica napus HOM05D002509 ORTHO05D002758 2.2e-10 68.9 41 73.2
BraA10t45294Z Brassica rapa HOM05D002509 ORTHO05D002758 3.7e-10 68.2 105 40.0
PSO832G3227 Papaver somniferum HOM05D002509 ORTHO05D002758 1.8e-09 65.9 64 54.7
PSO832G4438 Papaver somniferum HOM05D002509 ORTHO05D002758 1.8e-09 65.9 60 55.0
Carub.0006s0222 Capsella rubella HOM05D002509 ORTHO05D002758 3.1e-09 65.1 39 69.2
MBI14_g47392_MAGBIO Magnolia biondii HOM05D002509 ORTHO05D002758 7.0e-09 63.9 34 79.4
C02p01050 Brassica napus HOM05D002509 ORTHO05D002758 9.2e-09 63.5 31 83.9
BcaC03g13008 Brassica carinata HOM05D002509 ORTHO05D002758 1.2e-08 63.2 63 50.8
BolC2t06095H Brassica oleracea HOM05D002509 ORTHO05D002758 1.2e-08 63.2 63 50.8
PSO832G0113 Papaver somniferum HOM05D002509 ORTHO05D002758 2.0e-08 62.4 52 59.6
Thhalv10014118m.g Eutrema salsugineum HOM05D002509 ORTHO05D002758 3.5e-08 61.6 30 83.3
MBI05_g06553_MAGBIO Magnolia biondii HOM05D002509 ORTHO05D002758 3.5e-08 61.6 59 45.8
CiPaw.09G191100 Carya illinoinensis HOM05D002509 ORTHO05D002758 1.7e-07 59.3 48 52.1
Nn2g10395 Nelumbo nucifera HOM05D002509 ORTHO05D002758 1.1e-06 56.6 60 45.0
QL07p048017 Quercus lobata HOM05D002509 ORTHO05D002758 1.9e-06 55.8 66 47.0
QL07p048061 Quercus lobata HOM05D002509 ORTHO05D002758 1.9e-06 55.8 66 47.0
Thecc.05G041400 Theobroma cacao HOM05D002509 ORTHO05D002758 3.3e-06 55.1 66 47.0
Cpa.g.c32800 Carica papaya HOM05D002509 ORTHO05D002758 5.6e-06 54.3 32 71.9
Rhsim05G0191200 Rhododendron simsii HOM05D002509 ORTHO05D002758 7.3e-06 53.9 51 47.1


User provided reference genes

Program Settings