Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.06G031700 Carya illinoinensis HOM05D005846 ORTHO05D007369 4.9e-201 705.3 720 100.0
Cfa011122 Carpinus fangiana HOM05D005846 ORTHO05D007369 2.2e-108 397.5 379 78.6
QL04p035021 Quercus lobata HOM05D005846 ORTHO05D007369 1.6e-103 381.3 217 93.5
Prupe.2G134200 Prunus persica HOM05D005846 ORTHO05D007369 6.7e-102 375.9 302 82.8
MD07G1110700 Malus domestica HOM05D005846 ORTHO05D007369 1.5e-101 374.8 293 80.5
Haze_02742 Corylus avellana HOM05D005846 ORTHO05D007369 6.3e-100 369.4 227 88.5
Dinv44098 Davidia involucrata HOM05D005846 ORTHO05D007369 2.0e-98 364.4 215 91.2
CANSAT21G1379 Cannabis sativa HOM05D005846 ORTHO05D007369 4.5e-98 363.2 378 72.0
HanXRQChr06g0168821 Helianthus annuus HOM05D005846 ORTHO05D007369 4.5e-98 363.2 215 87.9
arahy.Tifrunner.gnm1.ann1.DPE9LE Arachis hypogaea HOM05D005846 ORTHO05D007369 5.0e-97 359.8 212 89.2
arahy.Tifrunner.gnm1.ann1.SA9NP4 Arachis hypogaea HOM05D005846 ORTHO05D007369 5.0e-97 359.8 212 89.2
COL.COLO4_35176 Corchorus olitorius HOM05D005846 ORTHO05D007369 1.9e-96 357.8 216 87.0
Ciclev10019079m.g Citrus clementina HOM05D005846 ORTHO05D007369 2.5e-96 357.5 218 86.2
ECA236G0469 Erigeron canadensis HOM05D005846 ORTHO05D007369 2.5e-96 357.5 217 85.7
Lsat_1_v5_gn_7_11161 Lactuca sativa HOM05D005846 ORTHO05D007369 3.2e-96 357.1 219 86.8
Duzib116G0440 Durio zibethinus HOM05D005846 ORTHO05D007369 5.5e-96 356.3 271 83.8
TWI14G0811 Tripterygium wilfordii HOM05D005846 ORTHO05D007369 7.2e-96 355.9 215 87.0
Potri.014G057000 Populus trichocarpa HOM05D005846 ORTHO05D007369 2.1e-95 354.4 213 86.9
PGR004G1251 Punica granatum HOM05D005846 ORTHO05D007369 2.7e-95 354.0 209 89.5
VMungo1383G2837 Vigna mungo HOM05D005846 ORTHO05D007369 4.7e-95 353.2 212 88.2
Medtr7g045280 Medicago truncatula HOM05D005846 ORTHO05D007369 6.1e-95 352.8 214 86.9
Thecc.01G387400 Theobroma cacao HOM05D005846 ORTHO05D007369 6.1e-95 352.8 218 85.3
Lj9C561G11 Lonicera japonica HOM05D005846 ORTHO05D007369 1.4e-94 351.7 217 84.3
Phvul.007G143350 Phaseolus vulgaris HOM05D005846 ORTHO05D007369 1.8e-94 351.3 213 86.9
Psat3g158120 Pisum sativum HOM05D005846 ORTHO05D007369 3.0e-94 350.5 216 86.1
Eucgr.D02512 Eucalyptus grandis HOM05D005846 ORTHO05D007369 5.2e-94 349.7 299 81.6
Lj1g0009878 Lotus japonicus HOM05D005846 ORTHO05D007369 5.2e-94 349.7 214 86.4
TPR.G39153 Trifolium pratense HOM05D005846 ORTHO05D007369 6.8e-94 349.4 298 73.5
Manes.05G051500 Manihot esculenta HOM05D005846 ORTHO05D007369 8.8e-94 349.0 207 88.9
Atru.chr5.196 Acer truncatum HOM05D005846 ORTHO05D007369 1.2e-93 348.6 382 73.8
MBI05_g14240_MAGBIO Magnolia biondii HOM05D005846 ORTHO05D007369 1.5e-93 348.2 215 84.2
Rhsim02G0216700 Rhododendron simsii HOM05D005846 ORTHO05D007369 1.5e-93 348.2 210 86.7
CSS0006984 Camellia sinensis var. sinensis HOM05D005846 ORTHO05D007369 2.0e-93 347.8 215 86.0
Glyma.01G074700 Glycine max HOM05D005846 ORTHO05D007369 2.6e-93 347.4 370 71.6
CSS0013945 Camellia sinensis var. sinensis HOM05D005846 ORTHO05D007369 5.7e-93 346.3 215 85.6
AL4G44100 Arabidopsis lyrata HOM05D005846 ORTHO05D007369 7.5e-93 345.9 213 85.0
Sp4g27070 Schrenkiella parvula HOM05D005846 ORTHO05D007369 7.5e-93 345.9 218 83.5
vmacro13469 Vaccinium macrocarpon HOM05D005846 ORTHO05D007369 7.5e-93 345.9 212 84.9
GSVIVG01018216001 Vitis vinifera HOM05D005846 ORTHO05D007369 7.5e-93 345.9 218 83.0
RcHm_v2.0_Chr1g0348261 Rosa chinensis HOM05D005846 ORTHO05D007369 9.8e-93 345.5 212 85.8
AT2G45000 Arabidopsis thaliana HOM05D005846 ORTHO05D007369 1.3e-92 345.1 213 85.0
Glyma.11G162365 Glycine max HOM05D005846 ORTHO05D007369 1.3e-92 345.1 210 87.6
BraA05t19484Z Brassica rapa HOM05D005846 ORTHO05D007369 1.7e-92 344.7 218 83.9
Sabra14G0041600 Salix brachista HOM05D002053 ORTHO05D002135 1.7e-92 344.7 207 87.4
Aqoxy5G03824 Aquilegia oxysepala HOM05D005846 ORTHO05D007369 2.2e-92 344.4 218 81.7
Carub.0004s2760 Capsella rubella HOM05D005846 ORTHO05D007369 3.7e-92 343.6 213 84.5
Thhalv10001339m.g Eutrema salsugineum HOM05D005846 ORTHO05D007369 3.7e-92 343.6 283 70.7
CARHR140260 Cardamine hirsuta HOM05D005846 ORTHO05D007369 4.8e-92 343.2 213 84.5
FAN06G0321 Fragaria x ananassa HOM05D005846 ORTHO05D007369 4.8e-92 343.2 217 83.9
FAN01G1706 Fragaria x ananassa HOM05D005846 ORTHO05D007369 6.3e-92 342.8 217 83.9
FAN10G4209 Fragaria x ananassa HOM05D005846 ORTHO05D007369 6.3e-92 342.8 217 83.9
BcaC02g12270 Brassica carinata HOM05D005846 ORTHO05D007369 8.3e-92 342.4 219 83.6
FAN03G1473 Fragaria x ananassa HOM05D005846 ORTHO05D007369 1.1e-91 342.0 217 83.4
SGA_v2.0_scaffold52G19202 Striga asiatica HOM05D005846 ORTHO05D007369 1.1e-91 342.0 210 84.8
A05p05100 Brassica napus HOM05D005846 ORTHO05D007369 1.4e-91 341.7 214 85.0
Sed0022623 Sechium edule HOM05D005846 ORTHO05D007369 1.4e-91 341.7 367 66.5
CsaV3_6G009050 Cucumis sativus L. HOM05D005846 ORTHO05D007369 1.8e-91 341.3 379 70.4
DCAR_031886 Daucus carota HOM05D005846 ORTHO05D007369 5.4e-91 339.7 206 85.9
FAN10G1341 Fragaria x ananassa HOM05D005846 ORTHO05D007369 5.4e-91 339.7 215 82.8
C04p05950 Brassica napus HOM05D005846 ORTHO05D007369 7.0e-91 339.3 219 83.1
BolC4t22226H Brassica oleracea HOM05D005846 ORTHO05D007369 7.0e-91 339.3 219 83.1
Ca_26287_v3 Cicer arietinum L. HOM05D005846 ORTHO05D007369 9.1e-91 339.0 215 85.1
FAN06G3163 Fragaria x ananassa HOM05D005846 ORTHO05D007369 9.1e-91 339.0 217 82.9
Gohir.D11G145600 Gossypium hirsutum HOM05D005846 ORTHO05D007369 9.1e-91 339.0 300 76.3
Nitab4.5_0003110g0060 Nicotiana tabacum HOM05D005846 ORTHO05D007369 9.1e-91 339.0 208 84.6
Lalb_Chr19g0126671 Lupinus albus HOM05D005846 ORTHO05D007369 1.2e-90 338.6 219 83.6
Gohir.A11G139400 Gossypium hirsutum HOM05D005846 ORTHO05D007369 1.6e-90 338.2 300 73.3
THA.LOC104802481 Tarenaya hassleriana HOM05D005846 ORTHO05D007369 3.5e-90 337.0 271 80.1
CAN.G899.26 Capsicum annuum HOM05D005846 ORTHO05D007369 4.5e-90 336.7 212 82.5
Actinidia22778 Actinidia chinensis HOM05D005846 ORTHO05D007369 5.9e-90 336.3 387 69.3
Actinidia22833 Actinidia chinensis HOM05D005846 ORTHO05D007369 5.9e-90 336.3 387 69.3
Migut.B01566 Erythranthe guttata HOM05D005846 ORTHO05D007369 7.7e-90 335.9 213 83.1
MSTRG.28219 Avicennia marina HOM05D005846 ORTHO05D007369 1.0e-89 335.5 209 84.2
Hund27391 Selenicereus undatus HOM05D005846 ORTHO05D007369 1.7e-89 334.7 208 84.1
Gorai.007G156100 Gossypium raimondii HOM05D005846 ORTHO05D007369 1.1e-88 332.0 307 74.6
Solyc01g090670.3 Solanum lycopersicum HOM05D005846 ORTHO05D007369 1.1e-88 332.0 208 83.2
Cc02_g24740 Coffea canephora HOM05D005846 ORTHO05D007369 1.5e-88 331.6 213 82.2
Ah.05g173450 Amaranthus hybridus HOM05D005846 ORTHO05D007369 2.5e-88 330.9 207 83.6
MELO3C022237.2 Cucumis melo HOM05D005846 ORTHO05D007369 6.1e-87 326.2 253 72.7
Sopen01g036400 Solanum pennellii HOM05D005846 ORTHO05D007369 1.0e-86 325.5 293 74.7
Aa31LG1G26590 Aethionema arabicum HOM05D005846 ORTHO05D007369 4.0e-86 323.6 218 77.5
ClCG06G002930 Citrullus lanatus HOM05D005846 ORTHO05D007369 5.2e-86 323.2 196 86.7
PSO675G5996 Papaver somniferum HOM05D005846 ORTHO05D007369 2.6e-85 320.9 209 80.9
PSO541G5798 Papaver somniferum HOM05D005846 ORTHO05D007369 3.4e-85 320.5 209 80.9
EL10Ac1g00809 Beta vulgaris HOM05D005846 ORTHO05D007369 2.2e-84 317.8 202 82.7
Peaxi162Scf00377g00722 Petunia axillaris HOM05D005846 ORTHO05D007369 4.9e-84 316.6 195 84.1
TAR375G0515 Trochodendron aralioides HOM05D005846 ORTHO05D007369 2.4e-83 314.3 185 89.2
CDE02G2440 Ceratophyllum demersum HOM05D005846 ORTHO05D007369 3.1e-83 313.9 215 74.9
unitig_26.g8879 Utricularia gibba HOM05D005846 ORTHO05D007369 1.6e-82 311.6 217 76.0
CDE04G1707 Ceratophyllum demersum HOM05D005846 ORTHO05D007369 3.5e-82 310.5 215 73.0
Nn6g33892 Nelumbo nucifera HOM05D005846 ORTHO05D007369 5.9e-82 309.7 198 82.8
ATR0559G037 Amborella trichopoda HOM05D005846 ORTHO05D007369 3.9e-81 307.0 217 75.1
HanXRQChr04g0123471 Helianthus annuus HOM05D005846 ORTHO05D007369 4.7e-79 300.1 187 82.9
FvH4_7g10470 Fragaria vesca HOM05D005846 ORTHO05D007369 1.4e-78 298.5 186 85.5
Oeu061505.1 Olea europaea HOM05D005846 ORTHO05D007369 8.9e-78 295.8 185 83.8
Zm00001eb367060 Zea mays HOM05D005846 ORTHO05D007369 7.0e-75 286.2 215 68.4
arahy.Tifrunner.gnm1.ann1.2XVX2B Arachis hypogaea HOM05D005846 ORTHO05D007369 3.3e-72 277.3 225 70.2
HPP92_027757 Vanilla planifolia HOM05D005846 ORTHO05D007369 5.6e-72 276.6 196 72.4
AagrBONN_evm.TU.Sc2ySwM_117.1077 Anthoceros agrestis HOM05D005846 ORTHO05D007369 1.1e-70 272.3 207 67.6
Pp3c15_14630 Physcomitrium patens HOM05D005846 ORTHO05D007369 2.0e-69 268.1 206 66.5
Mapoly0005s0221 Marchantia polymorpha HOM05D005846 ORTHO05D007369 1.7e-68 265.0 204 66.2
AUR62004139 Chenopodium quinoa HOM05D005846 ORTHO05D007369 3.7e-68 263.8 203 70.9
PGR004G1857 Punica granatum HOM05D005846 ORTHO05D007369 1.3e-65 255.4 157 87.3
AUR62013700 Chenopodium quinoa HOM05D005846 ORTHO05D007369 3.6e-63 247.3 188 72.3
Sc02g0002920 Simmondsia chinensis HOM05D005846 ORTHO05D007369 2.2e-60 238.0 148 85.1
Nitab4.5_0001823g0090 Nicotiana tabacum HOM05D005846 ORTHO05D007369 7.1e-59 233.0 171 74.9
CBR_g21126 Chara braunii HOM05D005846 ORTHO05D007369 7.6e-53 213.0 194 60.3
HPP92_002750 Vanilla planifolia HOM05D005846 ORTHO05D007369 2.0e-45 188.3 156 62.2
Atru.chr5.198 Acer truncatum HOM05D002424 ORTHO05D002640 4.6e-34 150.6 94 84.0
Os01g0856600 Oryza sativa ssp. japonica HOM05D005846 ORTHO05D007369 4.3e-32 144.1 112 63.4
arahy.Tifrunner.gnm1.ann1.V1AVP1 Arachis hypogaea HOM05D005846 ORTHO05D007369 3.1e-30 137.9 103 76.7
QL04p035108 Quercus lobata HOM05D005846 ORTHO05D007369 1.2e-29 136.0 79 87.3
Cre16.g677700 Chlamydomonas reinhardtii HOM05D005846 ORTHO05D007369 6.5e-28 130.2 210 40.0
QL04p035237 Quercus lobata HOM05D005846 ORTHO05D007369 3.9e-25 120.9 76 85.5
Cpa.g.sc22.5 Carica papaya HOM05D005846 ORTHO05D007369 1.6e-23 115.5 82 76.8
QL05p084337 Quercus lobata HOM05D005846 ORTHO05D007369 4.8e-23 114.0 64 92.2
Cpa.g.sc22.4 Carica papaya HOM05D005846 ORTHO05D007369 1.1e-22 112.8 107 58.9
PRCOL_00002612 Prasinoderma coloniale HOM05D005846 ORTHO05D007369 9.0e-22 109.8 206 35.9
HPP92_006013 Vanilla planifolia HOM05D005846 ORTHO05D007369 9.3e-19 99.8 107 52.3
HPP92_002751 Vanilla planifolia HOM05D005846 ORTHO05D007369 2.1e-18 98.6 62 77.4
C09p68450 Brassica napus HOM05D005846 ORTHO05D007369 4.6e-18 97.4 72 69.4
HanXRQChr12g0364311 Helianthus annuus HOM05D005846 ORTHO05D007369 6.1e-18 97.1 56 85.7
Atru.chr5.201 Acer truncatum HOM05D005846 ORTHO05D007369 7.9e-18 96.7 63 76.2
HanXRQChr16g0530801 Helianthus annuus HOM05D005846 ORTHO05D007369 1.0e-17 96.3 180 37.2
Lsat_1_v5_gn_4_126501 Lactuca sativa HOM05D005846 ORTHO05D007369 3.9e-17 94.4 63 76.2
HanXRQChr01g0009681 Helianthus annuus HOM05D005846 ORTHO05D007369 5.7e-16 90.5 168 36.3
MCO01G259 Micromonas commoda HOM05D005846 ORTHO05D007369 1.6e-15 89.0 95 48.4
MCO01G299 Micromonas commoda HOM05D005846 ORTHO05D007369 1.6e-15 89.0 95 48.4
HanXRQChr02g0053971 Helianthus annuus HOM05D005846 ORTHO05D000176 4.5e-13 80.9 159 36.5
A05p20700 Brassica napus HOM05D005846 ORTHO05D007369 1.0e-12 79.7 52 73.1
SalBow5G1215 Salvia bowleyana HOM05D005846 ORTHO05D007369 6.7e-09 67.0 63 60.3
HanXRQChr12g0366671 Helianthus annuus HOM05D005846 ORTHO05D007369 5.7e-08 63.9 36 80.6
BolC9t59592H Brassica oleracea HOM05D022734 ORTHO05D024517 3.7e-07 61.2 34 82.4


User provided reference genes

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