Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.06G000300 Carya illinoinensis HOM05D002653 ORTHO05D002623 3.4e-143 511.5 236 100.0
QL04p064992 Quercus lobata HOM05D002653 ORTHO05D002623 2.2e-78 296.2 169 81.7
Cfa016258 Carpinus fangiana HOM05D002653 ORTHO05D002623 8.8e-75 284.3 169 80.5
Prupe.3G028500 Prunus persica HOM05D002653 ORTHO05D002623 1.5e-63 246.9 167 66.5
MD17G1156800 Malus domestica HOM05D002653 ORTHO05D002623 2.6e-63 246.1 170 65.9
Dinv38369 Davidia involucrata HOM05D002653 ORTHO05D002623 1.1e-61 240.7 163 68.1
CSS0026519 Camellia sinensis var. sinensis HOM05D002653 ORTHO05D002623 2.5e-61 239.6 166 65.7
CSS0038262 Camellia sinensis var. sinensis HOM05D002653 ORTHO05D002623 3.2e-61 239.2 166 65.7
FAN14G5588 Fragaria x ananassa HOM05D002653 ORTHO05D002623 5.5e-61 238.4 173 62.4
FvH4_6g36300 Fragaria vesca HOM05D002653 ORTHO05D002623 1.2e-60 237.3 173 62.4
FAN14G0870 Fragaria x ananassa HOM05D002653 ORTHO05D002623 1.2e-60 237.3 173 62.4
FAN02G0462 Fragaria x ananassa HOM05D002653 ORTHO05D002623 8.0e-60 234.6 173 62.4
FAN09G4442 Fragaria x ananassa HOM05D002653 ORTHO05D002623 4.0e-59 232.3 173 61.8
Lalb_Chr01g0009381 Lupinus albus HOM05D002653 ORTHO05D002623 2.6e-58 229.6 169 62.7
Rhsim13G0127300 Rhododendron simsii HOM05D002653 ORTHO05D002623 5.7e-58 228.4 167 62.3
MELO3C010033.2 Cucumis melo HOM05D002653 ORTHO05D002623 8.2e-57 224.6 169 62.7
Hma1.2p1_1074F.1_g254380 Hydrangea macrophylla HOM05D002653 ORTHO05D002623 1.1e-56 224.2 164 64.6
Lj4g0020533 Lotus japonicus HOM05D002653 ORTHO05D002623 1.1e-56 224.2 171 60.8
vmacro03485 Vaccinium macrocarpon HOM05D002653 ORTHO05D002623 1.1e-56 224.2 163 65.0
LjContig00141g0016117 Lotus japonicus HOM05D002653 ORTHO05D002623 7.0e-56 221.5 171 60.2
Potri.001G455600 Populus trichocarpa HOM05D002653 ORTHO05D002623 4.5e-55 218.8 162 62.3
Glyma.13G174600 Glycine max HOM05D002653 ORTHO05D002623 1.3e-54 217.2 169 59.8
Sabra16G0308200 Salix brachista HOM05D002653 ORTHO05D002623 6.5e-54 214.9 169 60.9
Atru.chr8.1040 Acer truncatum HOM05D002653 ORTHO05D002623 8.5e-54 214.5 169 63.3
Phvul.002G234312 Phaseolus vulgaris HOM05D002653 ORTHO05D002623 8.5e-54 214.5 169 59.2
TPR.G8155 Trifolium pratense HOM05D002653 ORTHO05D002623 1.1e-53 214.2 170 58.8
Medtr2g007250 Medicago truncatula HOM05D002653 ORTHO05D002623 2.5e-53 213.0 161 61.5
Thecc.01G150000 Theobroma cacao HOM05D002653 ORTHO05D002623 2.5e-53 213.0 163 62.6
Phvul.002G234304 Phaseolus vulgaris HOM05D002653 ORTHO05D002623 7.2e-53 211.5 169 58.6
Duzib114G0204 Durio zibethinus HOM05D002653 ORTHO05D002623 1.2e-52 210.7 163 61.3
TWI34G1636 Tripterygium wilfordii HOM05D002653 ORTHO05D002623 2.1e-52 209.9 166 60.8
Gohir.D04G020301 Gossypium hirsutum HOM05D002653 ORTHO05D002623 2.7e-52 209.5 163 62.0
Gorai.012G024100 Gossypium raimondii HOM05D002653 ORTHO05D002623 2.7e-52 209.5 163 62.0
DCAR_018920 Daucus carota HOM05D002653 ORTHO05D002623 3.6e-52 209.1 167 60.5
Nn7g37406 Nelumbo nucifera HOM05D002653 ORTHO05D002623 3.6e-52 209.1 163 59.5
Gohir.A05G394600 Gossypium hirsutum HOM05D002653 ORTHO05D002623 6.1e-52 208.4 186 57.5
COL.COLO4_33574 Corchorus olitorius HOM05D002653 ORTHO05D002623 3.0e-51 206.1 163 61.3
PGR044G0026 Punica granatum HOM05D002653 ORTHO05D002623 3.0e-51 206.1 161 60.2
THA.LOC104814962 Tarenaya hassleriana HOM05D002653 ORTHO05D002623 4.0e-51 205.7 166 57.2
CANSAT01G2419 Cannabis sativa HOM05D002653 ORTHO05D002623 5.2e-51 205.3 163 60.1
Psat0s3513g0080 Pisum sativum HOM05D002653 ORTHO05D002623 5.2e-51 205.3 168 57.1
HanXRQChr07g0186761 Helianthus annuus HOM05D002653 ORTHO05D002623 1.2e-50 204.1 167 59.9
Lsat_1_v5_gn_8_5081 Lactuca sativa HOM05D002653 ORTHO05D002623 2.0e-50 203.4 167 58.1
ECA233G1976 Erigeron canadensis HOM05D002653 ORTHO05D002623 2.6e-50 203.0 167 58.7
EL10Ac1g01415 Beta vulgaris HOM05D002653 ORTHO05D002623 3.4e-50 202.6 164 61.6
Lsat_1_v5_gn_6_56501 Lactuca sativa HOM05D002653 ORTHO05D002623 3.4e-50 202.6 167 57.5
Manes.11G165700 Manihot esculenta HOM05D002653 ORTHO05D002623 6.3e-49 198.4 161 58.4
Sc15g0007450 Simmondsia chinensis HOM05D002653 ORTHO05D002623 1.1e-48 197.6 168 56.5
AT5G24740 Arabidopsis thaliana HOM05D002653 ORTHO05D002623 2.4e-48 196.4 166 56.6
Manes.09G076300 Manihot esculenta HOM05D002653 ORTHO05D002623 9.1e-48 194.5 169 55.6
AL6G36330 Arabidopsis lyrata HOM05D002653 ORTHO05D002623 3.5e-47 192.6 166 55.4
Migut.L00787 Erythranthe guttata HOM05D002653 ORTHO05D002623 4.5e-47 192.2 169 56.2
Oeu013190.1 Olea europaea HOM05D002653 ORTHO05D002623 7.7e-47 191.4 166 56.0
BcaNung01253 Brassica carinata HOM05D002653 ORTHO05D002623 1.3e-46 190.7 166 54.8
Carub.0006s2259 Capsella rubella HOM05D002653 ORTHO05D002623 1.3e-46 190.7 166 55.4
Migut.L00840 Erythranthe guttata HOM05D002653 ORTHO05D002623 1.7e-46 190.3 169 55.0
A06p35550 Brassica napus HOM05D002653 ORTHO05D002623 2.9e-46 189.5 166 53.6
BraA06t26480Z Brassica rapa HOM05D002653 ORTHO05D002623 2.9e-46 189.5 166 53.6
arahy.Tifrunner.gnm1.ann1.GW217K Arachis hypogaea HOM05D002653 ORTHO05D002623 5.0e-46 188.7 169 52.7
Solyc11g045160.3 Solanum lycopersicum HOM05D002653 ORTHO05D002623 5.0e-46 188.7 167 52.1
Sopen11g020620 Solanum pennellii HOM05D002653 ORTHO05D002623 5.0e-46 188.7 167 52.1
AUR62013467 Chenopodium quinoa HOM05D002653 ORTHO05D002623 6.5e-46 188.3 167 56.3
PSO063G3289 Papaver somniferum HOM05D002653 ORTHO05D002623 6.5e-46 188.3 171 52.0
C07p42990 Brassica napus HOM05D002653 ORTHO05D002623 1.1e-45 187.6 166 53.0
BolC7t44828H Brassica oleracea HOM05D002653 ORTHO05D002623 1.1e-45 187.6 166 53.0
TAR624G0800 Trochodendron aralioides HOM05D002653 ORTHO05D002623 1.5e-45 187.2 115 72.2
CAN.G690.1 Capsicum annuum HOM05D002653 ORTHO05D002623 1.9e-45 186.8 169 51.5
Aqoxy2G01525 Aquilegia oxysepala HOM05D002653 ORTHO05D002623 5.5e-45 185.3 167 53.9
Ca_14758_v3 Cicer arietinum L. HOM05D002653 ORTHO05D002623 7.2e-45 184.9 138 61.6
PSO782G1285 Papaver somniferum HOM05D002653 ORTHO05D002623 6.1e-44 181.8 171 50.9
SGA_v2.0_scaffold131G34416 Striga asiatica HOM05D002653 ORTHO05D002623 6.1e-44 181.8 163 55.2
ClCG03G010410 Citrullus lanatus HOM05D002653 ORTHO05D002623 2.6e-42 176.4 102 74.5
CDE12G0934 Ceratophyllum demersum HOM05D002653 ORTHO05D002623 5.7e-42 175.3 164 51.2
MSTRG.8096 Avicennia marina HOM05D002653 ORTHO05D002623 1.3e-41 174.1 163 49.7
unitig_8.g3108 Utricularia gibba HOM05D002653 ORTHO05D002623 2.8e-41 172.9 163 50.3
Thhalv10003500m.g Eutrema salsugineum HOM05D002653 ORTHO05D002623 2.7e-39 166.4 149 54.4
AUR62026805 Chenopodium quinoa HOM05D002653 ORTHO05D002623 4.5e-39 165.6 152 54.6
RcHm_v2.0_Chr2g0148301 Rosa chinensis HOM05D002653 ORTHO05D002623 4.5e-39 165.6 128 61.7
Cc11_g00300 Coffea canephora HOM05D002653 ORTHO05D002623 1.3e-38 164.1 102 70.6
SalBow1G2769 Salvia bowleyana HOM05D002653 ORTHO05D002623 2.9e-38 162.9 134 53.7
SalBow1G3632 Salvia bowleyana HOM05D002653 ORTHO05D002623 2.9e-38 162.9 134 53.7
Aa31LG11G3960 Aethionema arabicum HOM05D002653 ORTHO05D002623 5.0e-38 162.2 147 52.4
GSVIVG01019369001 Vitis vinifera HOM05D002653 ORTHO05D002623 5.0e-38 162.2 100 77.0
ATR1155G033 Amborella trichopoda HOM05D002653 ORTHO05D002623 4.3e-37 159.1 163 47.9
Os08g0116700 Oryza sativa ssp. japonica HOM05D002653 ORTHO05D002623 1.8e-35 153.7 169 47.9
Peaxi162Scf00126g00051 Petunia axillaris HOM05D002653 ORTHO05D002623 1.8e-35 153.7 151 50.3
Zm00001eb260910 Zea mays HOM05D002653 ORTHO05D002623 5.2e-35 152.1 164 47.6
Ciclev10013786m.g Citrus clementina HOM05D002653 ORTHO05D002623 2.0e-31 140.2 100 68.0
Ah.05g169290 Amaranthus hybridus HOM05D002653 ORTHO05D002623 1.3e-30 137.5 234 38.0
Lj4A824T16 Lonicera japonica HOM05D002653 ORTHO05D002623 3.9e-30 136.0 76 77.6
HPP92_001360 Vanilla planifolia HOM05D002653 ORTHO05D002623 6.8e-27 125.2 109 54.1
Sed0020559 Sechium edule HOM05D002653 ORTHO05D002623 1.3e-25 120.9 116 52.6
SEGI_37635 Sequoiadendron giganteum HOM05D002653 ORTHO05D002623 3.2e-24 116.3 101 49.5
SMO353G0260 Selaginella moellendorffii HOM05D002653 ORTHO05D002623 2.3e-19 100.1 186 32.3
CsaV3_1G044330 Cucumis sativus L. HOM05D002653 ORTHO05D002623 3.1e-19 99.8 50 78.0
VMungo0251G2657 Vigna mungo HOM05D002653 ORTHO05D002623 7.5e-18 95.1 188 33.0
Psat6g120600 Pisum sativum HOM05D001580 ORTHO05D002623 3.2e-16 89.7 59 66.1
Pp3c15_25690 Physcomitrium patens HOM05D002653 ORTHO05D002623 1.6e-15 87.4 185 33.5
Mapoly0009s0011 Marchantia polymorpha HOM05D002653 ORTHO05D002623 1.9e-13 80.5 167 29.9
GSVIVG01019371001 Vitis vinifera HOM05D002653 ORTHO05D002623 4.0e-11 72.8 70 50.0
Lsat_1_v5_gn_7_38641 Lactuca sativa HOM05D002653 ORTHO05D002623 6.8e-11 72.0 66 59.1
Lsat_1_v5_gn_4_86300 Lactuca sativa HOM05D002653 ORTHO05D002623 2.6e-10 70.1 68 57.4
VMungo0251G2462 Vigna mungo HOM05D002653 ORTHO05D002623 3.7e-09 66.2 33 78.8
Ciclev10012577m.g Citrus clementina HOM05D002653 ORTHO05D002623 1.4e-08 64.3 70 47.1
RcHm_v2.0_Chr2g0148311 Rosa chinensis HOM05D002653 ORTHO05D002623 1.9e-08 63.9 31 80.6
HPP92_001377 Vanilla planifolia HOM05D002653 ORTHO05D002623 8.6e-06 55.1 42 52.4


User provided reference genes

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