Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.05G123600 Carya illinoinensis HOM05D004582 ORTHO05D005507 3.5e-51 204.5 93 100.0
Potri.010G255000 Populus trichocarpa HOM05D004582 ORTHO05D005507 4.7e-40 167.5 79 96.2
Cfa005243 Carpinus fangiana HOM05D004582 ORTHO05D005507 1.8e-39 165.6 79 94.9
Cfa008860 Carpinus fangiana HOM05D002331 ORTHO05D002624 1.8e-39 165.6 79 94.9
Dinv17660 Davidia involucrata HOM05D004582 ORTHO05D005507 1.8e-39 165.6 95 85.3
Manes.01G004880 Manihot esculenta HOM05D004582 ORTHO05D005507 3.1e-39 164.9 79 94.9
Potri.008G002400 Populus trichocarpa HOM05D004582 ORTHO05D005507 4.0e-39 164.5 79 94.9
Ciclev10017231m.g Citrus clementina HOM05D004582 ORTHO05D005507 6.8e-39 163.7 79 93.7
CiPaw.06G093300 Carya illinoinensis HOM05D004582 ORTHO05D005507 8.9e-39 163.3 79 93.7
THA.LOC104800345 Tarenaya hassleriana HOM05D004582 ORTHO05D005507 1.2e-38 162.9 79 93.7
CANSAT78G1495 Cannabis sativa HOM05D004582 ORTHO05D005507 1.5e-38 162.5 79 92.4
Duzib132G0727 Durio zibethinus HOM05D004582 ORTHO05D005507 1.5e-38 162.5 79 92.4
THA.LOC104819361 Tarenaya hassleriana HOM05D004582 ORTHO05D005507 1.5e-38 162.5 79 93.7
Gohir.A04G109900 Gossypium hirsutum HOM05D004582 ORTHO05D005507 2.0e-38 162.2 79 93.7
Gohir.D04G150100 Gossypium hirsutum HOM05D004582 ORTHO05D005507 2.0e-38 162.2 79 93.7
Gorai.012G136700 Gossypium raimondii HOM05D004582 ORTHO05D005507 2.0e-38 162.2 79 93.7
Solyc04g008750.3 Solanum lycopersicum HOM05D004582 ORTHO05D005507 2.0e-38 162.2 79 91.1
Sopen04g003930 Solanum pennellii HOM05D004582 ORTHO05D005507 2.0e-38 162.2 79 91.1
PGSC0003DMG400025297 Solanum tuberosum HOM05D004582 ORTHO05D005507 2.6e-38 161.8 79 91.1
vmacro00989 Vaccinium macrocarpon HOM05D004582 ORTHO05D005507 2.6e-38 161.8 78 93.6
AL8G40820 Arabidopsis lyrata HOM05D004582 ORTHO05D005507 3.4e-38 161.4 79 91.1
AT5G63670 Arabidopsis thaliana HOM05D004582 ORTHO05D005507 3.4e-38 161.4 79 91.1
BcaB07g29700 Brassica carinata HOM05D004582 ORTHO05D005507 3.4e-38 161.4 79 91.1
BcaC03g18219 Brassica carinata HOM05D004582 ORTHO05D005507 3.4e-38 161.4 79 91.1
A02p42940 Brassica napus HOM05D004582 ORTHO05D005507 3.4e-38 161.4 79 91.1
C02p62880 Brassica napus HOM05D004582 ORTHO05D005507 3.4e-38 161.4 79 91.1
BraA02t09217Z Brassica rapa HOM05D004582 ORTHO05D005507 3.4e-38 161.4 79 91.1
Carub.0008s2444 Capsella rubella HOM05D004582 ORTHO05D005507 3.4e-38 161.4 79 91.1
Thhalv10005155m.g Eutrema salsugineum HOM05D004582 ORTHO05D005507 3.4e-38 161.4 79 91.1
Sp2g26760 Schrenkiella parvula HOM05D004582 ORTHO05D005507 3.4e-38 161.4 79 91.1
Duzib248G0155 Durio zibethinus HOM05D004582 ORTHO05D005507 4.4e-38 161.0 79 92.4
Thecc.02G151700 Theobroma cacao HOM05D004582 ORTHO05D005507 5.8e-38 160.6 79 92.4
CSS0028000 Camellia sinensis var. sinensis HOM05D004582 ORTHO05D005507 9.8e-38 159.8 77 92.2
MELO3C023752.2 Cucumis melo HOM05D004582 ORTHO05D005507 9.8e-38 159.8 79 91.1
CsaV3_3G020290 Cucumis sativus L. HOM05D004582 ORTHO05D005507 9.8e-38 159.8 79 91.1
Actinidia04370 Actinidia chinensis HOM05D004582 ORTHO05D005507 1.3e-37 159.5 77 93.5
CAN.G419.18 Capsicum annuum HOM05D004582 ORTHO05D005507 1.3e-37 159.5 80 91.2
CARHR278210 Cardamine hirsuta HOM05D004582 ORTHO05D005507 1.3e-37 159.5 79 89.9
Aa31LG10G11080 Aethionema arabicum HOM05D004582 ORTHO05D005507 1.7e-37 159.1 79 88.6
Aa31LG1G18160 Aethionema arabicum HOM05D004582 ORTHO05D005507 1.7e-37 159.1 79 88.6
Cc11_g00370 Coffea canephora HOM05D004582 ORTHO05D005507 1.7e-37 159.1 75 94.7
GSVIVG01034346001 Vitis vinifera HOM05D004582 ORTHO05D005507 1.7e-37 159.1 77 93.5
Aa31LG3G17960 Aethionema arabicum HOM05D004582 ORTHO05D005507 2.9e-37 158.3 79 88.6
Carub.0006s0753 Capsella rubella HOM05D004582 ORTHO05D005507 2.9e-37 158.3 79 88.6
ClCG05G012130 Citrullus lanatus HOM05D004582 ORTHO05D005507 2.9e-37 158.3 79 89.9
Atru.chr6.1863 Acer truncatum HOM05D004582 ORTHO05D005507 3.7e-37 157.9 79 91.1
Sed0002882 Sechium edule HOM05D004582 ORTHO05D005507 3.7e-37 157.9 79 89.9
Hma1.2p1_1901F.1_g307030 Hydrangea macrophylla HOM05D004582 ORTHO05D005507 4.9e-37 157.5 79 92.4
Hma1.2p1_2673F.1_g326700 Hydrangea macrophylla HOM05D004582 ORTHO05D005507 4.9e-37 157.5 79 92.4
DCAR_026806 Daucus carota HOM05D004582 ORTHO05D005507 6.4e-37 157.1 79 88.6
Sed0027851 Sechium edule HOM05D004582 ORTHO05D005507 6.4e-37 157.1 79 89.9
AT5G08565 Arabidopsis thaliana HOM05D004582 ORTHO05D005507 8.3e-37 156.8 79 87.3
Lalb_Chr10g0094681 Lupinus albus HOM05D004582 ORTHO05D005507 8.3e-37 156.8 79 89.9
Atru.chr11.31 Acer truncatum HOM05D004582 ORTHO05D005507 1.1e-36 156.4 79 89.9
MSTRG.25043 Avicennia marina HOM05D004582 ORTHO05D005507 1.1e-36 156.4 78 87.2
Eucgr.G02614 Eucalyptus grandis HOM05D004582 ORTHO05D005507 1.1e-36 156.4 81 91.4
SGA_v2.0_scaffold231G43443 Striga asiatica HOM05D004582 ORTHO05D005507 1.1e-36 156.4 78 87.2
SGA_v2.0_scaffold417G51254 Striga asiatica HOM05D004582 ORTHO05D005507 1.1e-36 156.4 78 87.2
AL6G19290 Arabidopsis lyrata HOM05D004582 ORTHO05D005507 1.9e-36 155.6 79 86.1
Migut.N02765 Erythranthe guttata HOM05D004582 ORTHO05D005507 1.9e-36 155.6 78 87.2
Glyma.17G000400 Glycine max HOM05D004582 ORTHO05D005507 1.9e-36 155.6 79 88.6
Gohir.D13G059000 Gossypium hirsutum HOM05D004582 ORTHO05D005507 1.9e-36 155.6 79 87.3
Oeu002508.1 Olea europaea HOM05D004582 ORTHO05D005507 1.9e-36 155.6 79 86.1
QL03p073673 Quercus lobata HOM05D004582 ORTHO05D005507 1.9e-36 155.6 74 91.9
SalBow6G5789 Salvia bowleyana HOM05D004582 ORTHO05D005507 1.9e-36 155.6 78 87.2
SalBow8G4318 Salvia bowleyana HOM05D004582 ORTHO05D005507 1.9e-36 155.6 78 87.2
PGR142G2001 Punica granatum HOM05D004582 ORTHO05D005507 3.2e-36 154.8 81 90.1
Atru.chr11.27 Acer truncatum HOM05D004582 ORTHO05D005507 4.1e-36 154.5 79 88.6
Oeu039967.1 Olea europaea HOM05D004582 ORTHO05D005507 4.1e-36 154.5 84 82.1
BcaB01g05582 Brassica carinata HOM05D004582 ORTHO05D005507 5.4e-36 154.1 79 87.3
Peaxi162Scf00329g00317 Petunia axillaris HOM05D004582 ORTHO05D005507 5.4e-36 154.1 80 88.8
Phvul.003G004200 Phaseolus vulgaris HOM05D004582 ORTHO05D005507 5.4e-36 154.1 79 88.6
VMungo0251G1823 Vigna mungo HOM05D000329 ORTHO05D002813 5.4e-36 154.1 79 88.6
MBI11_g25051_MAGBIO Magnolia biondii HOM05D004582 ORTHO05D005507 7.0e-36 153.7 77 88.3
Ca_16312_v3 Cicer arietinum L. HOM05D004582 ORTHO05D005507 9.2e-36 153.3 80 88.8
TWI15G0512 Tripterygium wilfordii HOM05D004582 ORTHO05D005507 9.2e-36 153.3 81 88.9
Glyma.07G274100 Glycine max HOM05D004582 ORTHO05D005507 1.2e-35 152.9 79 87.3
Lsat_1_v5_gn_1_108541 Lactuca sativa HOM05D004582 ORTHO05D005507 1.2e-35 152.9 75 90.7
Phvul.001G068300 Phaseolus vulgaris HOM05D004582 ORTHO05D005507 1.2e-35 152.9 79 87.3
Hund08683 Selenicereus undatus HOM05D004582 ORTHO05D005507 1.2e-35 152.9 77 87.0
TAR629G2421 Trochodendron aralioides HOM05D004582 ORTHO05D005507 1.2e-35 152.9 79 87.3
unitig_749.g13837 Utricularia gibba HOM05D004582 ORTHO05D005507 1.2e-35 152.9 78 85.9
BcaB01g05655 Brassica carinata HOM05D004582 ORTHO05D005507 1.6e-35 152.5 79 86.1
A03p03980 Brassica napus HOM05D004582 ORTHO05D005507 1.6e-35 152.5 79 86.1
C03p04450 Brassica napus HOM05D004582 ORTHO05D005507 1.6e-35 152.5 79 86.1
Sc06g0007770 Simmondsia chinensis HOM05D004582 ORTHO05D005507 2.0e-35 152.1 79 88.6
CDE07G1374 Ceratophyllum demersum HOM05D004582 ORTHO05D005507 2.7e-35 151.8 77 87.0
Gohir.A13G062900 Gossypium hirsutum HOM05D004582 ORTHO05D005507 2.7e-35 151.8 79 84.8
Lj6g0014483 Lotus japonicus HOM05D004582 ORTHO05D005507 2.7e-35 151.8 79 87.3
Sp6g34300 Schrenkiella parvula HOM05D004582 ORTHO05D005507 2.7e-35 151.8 79 84.8
EL10Ac9g23021 Beta vulgaris HOM05D004582 ORTHO05D005507 3.5e-35 151.4 79 86.1
Psat5g071960 Pisum sativum HOM05D004582 ORTHO05D005507 3.5e-35 151.4 79 86.1
MSTRG.1036 Avicennia marina HOM05D004582 ORTHO05D005507 4.6e-35 151.0 78 83.3
Nitab4.5_0000129g0010 Nicotiana tabacum HOM05D004582 ORTHO05D005507 4.6e-35 151.0 80 87.5
Thhalv10015347m.g Eutrema salsugineum HOM05D004582 ORTHO05D005507 7.8e-35 150.2 79 84.8
Nn8g39808 Nelumbo nucifera HOM05D004582 ORTHO05D005507 7.8e-35 150.2 85 84.7
Medtr3g092730 Medicago truncatula HOM05D004582 ORTHO05D005507 1.0e-34 149.8 79 86.1
Medtr3g092770 Medicago truncatula HOM05D004582 ORTHO05D005507 1.0e-34 149.8 79 86.1
COL.COLO4_33156 Corchorus olitorius HOM05D004582 ORTHO05D005507 1.3e-34 149.4 79 83.5
ECA246G1034 Erigeron canadensis HOM05D004582 ORTHO05D005507 1.7e-34 149.1 75 86.7
ATR0772G012 Amborella trichopoda HOM05D004582 ORTHO05D005507 2.3e-34 148.7 75 85.3
MD17G1271200 Malus domestica HOM05D004582 ORTHO05D005507 2.3e-34 148.7 74 90.5
HanXRQChr15g0475831 Helianthus annuus HOM05D004582 ORTHO05D005507 3.0e-34 148.3 77 87.0
MD09G1278200 Malus domestica HOM05D004582 ORTHO05D005507 3.0e-34 148.3 77 87.0
MD04G1047800 Malus domestica HOM05D004582 ORTHO05D005507 1.9e-33 145.6 80 82.5
TPR.G31176 Trifolium pratense HOM05D004582 ORTHO05D005507 1.9e-33 145.6 79 81.0
ATR0693G307 Amborella trichopoda HOM05D004582 ORTHO05D005507 3.3e-33 144.8 75 84.0
SEGI_05202 Sequoiadendron giganteum HOM05D004582 ORTHO05D005507 3.3e-33 144.8 79 81.0
Prupe.3G015100 Prunus persica HOM05D004582 ORTHO05D005507 1.2e-32 142.9 74 85.1
PSO541G0162 Papaver somniferum HOM05D004582 ORTHO05D005507 2.1e-32 142.1 77 83.1
PSO675G8561 Papaver somniferum HOM05D004582 ORTHO05D005507 2.1e-32 142.1 77 83.1
SEGI_39424 Sequoiadendron giganteum HOM05D004582 ORTHO05D005507 2.1e-32 142.1 79 79.7
Aqoxy5G02794 Aquilegia oxysepala HOM05D004582 ORTHO05D005507 2.8e-32 141.7 77 81.8
Os07g0623400 Oryza sativa ssp. japonica HOM05D004582 ORTHO05D005507 4.7e-32 141.0 78 79.5
HPP92_027251 Vanilla planifolia HOM05D004582 ORTHO05D005507 4.7e-32 141.0 78 79.5
Aqoxy3G01747 Aquilegia oxysepala HOM05D004582 ORTHO05D005507 6.2e-32 140.6 77 80.5
PSO339G5842 Papaver somniferum HOM05D004582 ORTHO05D005507 8.1e-32 140.2 77 81.8
RcHm_v2.0_Chr4g0406241 Rosa chinensis HOM05D004582 ORTHO05D005507 3.1e-31 138.3 81 80.2
Gorai.013G066800 Gossypium raimondii HOM05D004582 ORTHO05D005507 4.0e-31 137.9 115 60.0
SGA_v2.0_scaffold14G06942 Striga asiatica HOM05D004582 ORTHO05D005507 5.2e-31 137.5 77 75.3
BolC2t12361H Brassica oleracea HOM05D004582 ORTHO05D005507 2.0e-30 135.6 80 77.5
FvH4_4g10630 Fragaria vesca HOM05D004582 ORTHO05D005507 2.0e-30 135.6 81 79.0
FAN07G0418 Fragaria x ananassa HOM05D004582 ORTHO05D005507 2.0e-30 135.6 81 79.0
FAN12G0218 Fragaria x ananassa HOM05D004582 ORTHO05D005507 2.0e-30 135.6 81 79.0
FAN12G1626 Fragaria x ananassa HOM05D004582 ORTHO05D005507 2.0e-30 135.6 81 79.0
FAN17G0627 Fragaria x ananassa HOM05D004582 ORTHO05D005507 2.0e-30 135.6 81 79.0
AUR62032890 Chenopodium quinoa HOM05D004582 ORTHO05D005507 2.6e-30 135.2 79 79.7
HanXRQChr01g0026751 Helianthus annuus HOM05D004582 ORTHO05D005507 1.7e-29 132.5 76 76.3
HanXRQChr01g0026901 Helianthus annuus HOM05D004582 ORTHO05D005507 1.7e-29 132.5 76 76.3
Pp3c6_2640 Physcomitrium patens HOM05D004582 ORTHO05D005507 2.9e-29 131.7 77 70.1
AagrBONN_evm.TU.Sc2ySwM_344.5487 Anthoceros agrestis HOM05D004582 ORTHO05D005507 1.9e-28 129.0 74 73.0
Mapoly0166s0006 Marchantia polymorpha HOM05D004582 ORTHO05D005507 2.4e-28 128.6 76 72.4
Ah.11g040470 Amaranthus hybridus HOM05D004582 ORTHO05D005507 4.1e-28 127.9 110 58.2
Mapoly0092s0011 Marchantia polymorpha HOM05D004582 ORTHO05D005507 9.2e-28 126.7 79 68.4
FAN22G0072 Fragaria x ananassa HOM05D004582 ORTHO05D005507 3.5e-27 124.8 81 76.5
SalBow6G4393 Salvia bowleyana HOM05D004582 ORTHO05D005507 3.5e-27 124.8 79 69.6
SalBow8G4232 Salvia bowleyana HOM05D004582 ORTHO05D005507 3.5e-27 124.8 79 69.6
SMO358G0649 Selaginella moellendorffii HOM05D004582 ORTHO05D005507 1.3e-26 122.9 75 69.3
Sc06g0007290 Simmondsia chinensis HOM05D004582 ORTHO05D005507 1.5e-25 119.4 63 87.3
Nitab4.5_0008730g0050 Nicotiana tabacum HOM05D004582 ORTHO05D005507 5.2e-23 110.9 80 71.2
Nitab4.5_0000129g0060 Nicotiana tabacum HOM05D004582 ORTHO05D005507 2.9e-21 105.1 80 66.2
MCO11G500 Micromonas commoda HOM05D004582 ORTHO05D005507 1.1e-20 103.2 75 54.7
CARHR204400 Cardamine hirsuta HOM05D004582 ORTHO05D005507 2.4e-20 102.1 59 76.3
Lj5g0002326 Lotus japonicus HOM05D004582 ORTHO05D005507 2.4e-20 102.1 63 71.4
Lj5g0003678 Lotus japonicus HOM05D004582 ORTHO05D005507 2.4e-20 102.1 63 71.4
Lj5g0005298 Lotus japonicus HOM05D004582 ORTHO05D005507 2.4e-20 102.1 63 71.4
BcaB01g05656 Brassica carinata HOM05D000467 ORTHO05D000379 3.5e-19 98.2 61 75.4
PRCOL_00005197 Prasinoderma coloniale HOM05D004582 ORTHO05D005507 1.3e-18 96.3 74 52.7
Sabra10G0198500 Salix brachista HOM05D004582 ORTHO05D005507 3.9e-18 94.7 79 67.1
Haze_11883 Corylus avellana HOM05D004582 ORTHO05D005507 2.5e-17 92.0 80 61.2
CBR_g44398 Chara braunii HOM05D004582 ORTHO05D005507 2.1e-16 89.0 56 64.3
Haze_26483 Corylus avellana HOM05D004582 ORTHO05D005507 6.0e-11 70.9 67 44.8
Nitab4.5_0011163g0030 Nicotiana tabacum HOM05D004582 ORTHO05D005507 1.5e-09 66.2 80 50.0
Cre02.g116300 Chlamydomonas reinhardtii HOM05D004582 ORTHO05D005507 1.9e-09 65.9 64 45.3
MD07G1114100 Malus domestica HOM05D004582 ORTHO05D005507 3.1e-07 58.5 36 69.4


User provided reference genes

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