Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.04G179100 Carya illinoinensis HOM05D005219 ORTHO05D006451 0.0e+00 1407.1 719 100.0
CiPaw.03G253500 Carya illinoinensis HOM05D005219 ORTHO05D006451 0.0e+00 1126.3 722 79.6
Cfa002238 Carpinus fangiana HOM05D005219 ORTHO05D006451 0.0e+00 1125.2 721 79.2
QL10p038974 Quercus lobata HOM05D005219 ORTHO05D006451 3.6e-305 1051.2 735 74.7
Prupe.4G281500 Prunus persica HOM05D005219 ORTHO05D006451 3.0e-267 925.2 721 66.4
Haze_25419 Corylus avellana HOM05D005219 ORTHO05D006451 1.1e-264 916.8 636 74.8
MD15G1138200 Malus domestica HOM05D005219 ORTHO05D006451 6.4e-262 907.5 719 66.2
Thecc.01G233500 Theobroma cacao HOM05D005219 ORTHO05D006451 7.6e-255 884.0 731 64.2
ClCG02G000120 Citrullus lanatus HOM05D005219 ORTHO05D006451 1.3e-251 873.2 723 63.5
Cpa.g.sc37.82 Carica papaya HOM05D005219 ORTHO05D006451 1.8e-251 872.8 734 62.9
CsaV3_2G019800 Cucumis sativus L. HOM05D005219 ORTHO05D006451 5.1e-251 871.3 722 63.2
Atru.chr4.1140 Acer truncatum HOM05D005219 ORTHO05D006451 4.3e-250 868.2 722 65.1
Duzib147G1025 Durio zibethinus HOM05D005219 ORTHO05D006451 5.6e-250 867.8 729 62.6
arahy.Tifrunner.gnm1.ann1.9Z2GEU Arachis hypogaea HOM05D005219 ORTHO05D006451 1.5e-247 859.8 721 62.6
Ca_17595_v3 Cicer arietinum L. HOM05D005219 ORTHO05D006451 1.1e-245 853.6 724 62.2
TAR381G1173 Trochodendron aralioides HOM05D005219 ORTHO05D006451 1.9e-245 852.8 730 62.9
arahy.Tifrunner.gnm1.ann1.4364K7 Arachis hypogaea HOM05D005219 ORTHO05D006451 7.1e-245 850.9 720 62.2
Medtr8g095210 Medicago truncatula HOM05D005219 ORTHO05D006451 9.3e-245 850.5 723 62.2
Gohir.A05G376400 Gossypium hirsutum HOM05D005219 ORTHO05D006451 2.1e-244 849.4 725 62.2
CANSAT54G2070 Cannabis sativa HOM05D005219 ORTHO05D006451 4.6e-244 848.2 724 61.7
CSS0004797 Camellia sinensis var. sinensis HOM05D005219 ORTHO05D006451 1.0e-243 847.0 730 61.5
CSS0003875 Camellia sinensis var. sinensis HOM05D005219 ORTHO05D006451 3.9e-243 845.1 730 61.5
Gohir.D04G039600 Gossypium hirsutum HOM05D005219 ORTHO05D006451 1.1e-242 843.6 724 61.5
Gorai.012G044600 Gossypium raimondii HOM05D005219 ORTHO05D006451 1.1e-242 843.6 726 61.6
TWI75G0018 Tripterygium wilfordii HOM05D005219 ORTHO05D006451 1.6e-241 839.7 724 63.4
FvH4_1g25450 Fragaria vesca HOM05D005219 ORTHO05D006451 2.8e-241 839.0 720 62.2
Ciclev10025072m.g Citrus clementina HOM05D005219 ORTHO05D006451 2.0e-239 832.8 719 61.1
Sed0017542 Sechium edule HOM05D005219 ORTHO05D006451 5.9e-239 831.2 723 61.7
Actinidia19951 Actinidia chinensis HOM05D005219 ORTHO05D006451 2.9e-238 828.9 723 61.0
TPR.G12784 Trifolium pratense HOM05D005219 ORTHO05D006451 2.9e-238 828.9 722 61.6
RcHm_v2.0_Chr2g0123471 Rosa chinensis HOM05D005219 ORTHO05D006451 1.1e-237 827.0 720 62.8
Potri.019G008541 Populus trichocarpa HOM05D005219 ORTHO05D006451 4.2e-237 825.1 723 61.5
FAN19G1780 Fragaria x ananassa HOM05D005219 ORTHO05D006451 7.2e-237 824.3 720 61.5
FAN28G0381 Fragaria x ananassa HOM05D005219 ORTHO05D006451 9.4e-237 823.9 720 61.5
FAN23G1877 Fragaria x ananassa HOM05D005219 ORTHO05D006451 3.6e-236 822.0 720 61.8
Actinidia36586 Actinidia chinensis HOM05D005219 ORTHO05D004865 1.4e-235 820.1 725 60.8
Glyma.05G197300 Glycine max HOM05D005219 ORTHO05D006451 2.3e-235 819.3 722 61.6
Lalb_Chr13g0296831 Lupinus albus HOM05D005219 ORTHO05D006451 2.3e-235 819.3 721 60.2
Lalb_Chr12g0202821 Lupinus albus HOM05D005219 ORTHO05D006451 2.5e-234 815.8 760 58.0
GSVIVG01022419001 Vitis vinifera HOM05D005219 ORTHO05D006451 4.3e-234 815.1 731 59.2
Nn1g08341 Nelumbo nucifera HOM05D005219 ORTHO05D006451 2.2e-233 812.8 733 59.8
PGR142G2743 Punica granatum HOM05D005219 ORTHO05D006451 3.7e-233 812.0 734 59.4
Glyma.08G004700 Glycine max HOM05D005219 ORTHO05D006451 2.4e-232 809.3 722 60.5
Potri.004G138900 Populus trichocarpa HOM05D005219 ORTHO05D006451 5.3e-232 808.1 723 61.4
Sabra19G0006900 Salix brachista HOM05D005219 ORTHO05D006451 1.2e-231 807.0 727 60.5
FAN26G1898 Fragaria x ananassa HOM05D005219 ORTHO05D006451 2.6e-231 805.8 720 61.0
Eucgr.I00008 Eucalyptus grandis HOM05D005219 ORTHO05D006451 1.3e-230 803.5 731 60.2
Phvul.002G277800 Phaseolus vulgaris HOM05D005219 ORTHO05D006451 8.5e-230 800.8 721 59.6
Lj4C816G5 Lonicera japonica HOM05D005219 ORTHO05D006451 3.0e-227 792.3 724 58.0
Lj4g0026114 Lotus japonicus HOM05D005219 ORTHO05D006451 8.8e-227 790.8 726 59.1
EL10Ac4g08973 Beta vulgaris HOM05D005219 ORTHO05D006451 2.6e-215 752.7 719 55.9
THA.LOC104818408 Tarenaya hassleriana HOM05D005219 ORTHO05D006451 2.5e-213 746.1 725 55.6
Nitab4.5_0002704g0040 Nicotiana tabacum HOM05D005219 ORTHO05D006451 3.2e-213 745.7 743 55.9
Hund06895 Selenicereus undatus HOM05D005219 ORTHO05D006451 8.0e-212 741.1 726 56.2
AUR62004810 Chenopodium quinoa HOM05D005219 ORTHO05D006451 1.0e-211 740.7 719 54.9
Cc00_g05550 Coffea canephora HOM05D005219 ORTHO05D006451 8.8e-211 737.6 734 55.9
Nitab4.5_0000496g0030 Nicotiana tabacum HOM05D005219 ORTHO05D006451 2.0e-210 736.5 743 55.3
Oeu011013.3 Olea europaea HOM05D005219 ORTHO05D006451 4.4e-210 735.3 718 56.1
Phvul.009G157400 Phaseolus vulgaris HOM05D005219 ORTHO05D006451 4.4e-210 735.3 722 56.8
Aqoxy6G00109 Aquilegia oxysepala HOM05D005219 ORTHO05D006451 9.7e-210 734.2 719 56.1
HanXRQChr02g0043081 Helianthus annuus HOM05D005219 ORTHO05D006451 9.7e-210 734.2 721 54.9
Rhsim10G0123800 Rhododendron simsii HOM05D005219 ORTHO05D006451 1.3e-209 733.8 673 58.7
Peaxi162Scf00525g00059 Petunia axillaris HOM05D005219 ORTHO05D006451 1.8e-208 729.9 743 55.5
VMungo1309G1202 Vigna mungo HOM05D005219 ORTHO05D006451 4.1e-208 728.8 733 54.3
Hund22177 Selenicereus undatus HOM05D005219 ORTHO05D006451 3.5e-207 725.7 719 56.1
AUR62036029 Chenopodium quinoa HOM05D005219 ORTHO05D006451 1.7e-206 723.4 753 52.7
AT5G08630 Arabidopsis thaliana HOM05D005219 ORTHO05D006451 2.5e-205 719.5 738 53.8
MELO3C023202.2 Cucumis melo HOM05D005219 ORTHO05D006451 2.5e-205 719.5 626 60.9
Glyma.06G159700 Glycine max HOM05D005219 ORTHO05D006451 3.2e-205 719.2 760 53.6
A10p28110 Brassica napus HOM05D005219 ORTHO05D006451 1.2e-204 717.2 745 54.6
Manes.13G076600 Manihot esculenta HOM05D005219 ORTHO05D006451 2.1e-204 716.5 642 59.8
Carub.0006s0762 Capsella rubella HOM05D005219 ORTHO05D006451 2.3e-203 713.0 742 52.6
CARHR204350 Cardamine hirsuta HOM05D005219 ORTHO05D006451 2.3e-203 713.0 738 53.0
AL6G19360 Arabidopsis lyrata HOM05D005219 ORTHO05D006451 5.2e-203 711.8 737 53.3
BolC9t59579H Brassica oleracea HOM05D005219 ORTHO05D006451 1.2e-202 710.7 733 53.5
Lsat_1_v5_gn_5_69540 Lactuca sativa HOM05D005219 ORTHO05D006451 1.2e-202 710.7 722 55.1
C09p68310 Brassica napus HOM05D005219 ORTHO05D006451 4.4e-202 708.8 733 53.5
BraA10t44860Z Brassica rapa HOM05D005219 ORTHO05D006451 5.7e-202 708.4 736 54.2
Oeu037875.1 Olea europaea HOM05D005219 ORTHO05D006451 9.8e-202 707.6 712 54.8
ECA233G5772 Erigeron canadensis HOM05D005219 ORTHO05D006451 2.2e-201 706.4 711 54.9
Thhalv10012814m.g Eutrema salsugineum HOM05D005219 ORTHO05D006451 8.3e-201 704.5 745 52.5
BcaB01g05651 Brassica carinata HOM05D005219 ORTHO05D006451 2.4e-200 703.0 727 52.8
Ah.06g191770 Amaranthus hybridus HOM05D005219 ORTHO05D006451 5.4e-200 701.8 716 54.3
C03p04490 Brassica napus HOM05D005219 ORTHO05D006451 2.7e-199 699.5 727 52.5
PGSC0003DMG400023442 Solanum tuberosum HOM05D005219 ORTHO05D006451 1.6e-196 690.3 742 53.5
Psat7g041880 Pisum sativum HOM05D005219 ORTHO05D006451 3.6e-196 689.1 643 58.2
Aa31LG3G17910 Aethionema arabicum HOM05D005219 ORTHO05D006451 6.1e-196 688.3 774 49.4
BcaB08g37236 Brassica carinata HOM05D005219 ORTHO05D006451 6.1e-196 688.3 723 53.5
DCAR_009584 Daucus carota HOM05D005219 ORTHO05D006451 2.3e-195 686.4 738 52.4
A03p04030 Brassica napus HOM05D005219 ORTHO05D006451 4.0e-195 685.6 728 53.3
Dinv16800 Davidia involucrata HOM05D005219 ORTHO05D006451 6.8e-195 684.9 600 61.2
BraA03t09746Z Brassica rapa HOM05D005219 ORTHO05D006451 2.6e-194 682.9 727 52.8
Sopen05g034930 Solanum pennellii HOM05D005219 ORTHO05D006451 7.5e-194 681.4 742 53.2
Solyc05g056530.4 Solanum lycopersicum HOM05D005219 ORTHO05D006451 2.2e-193 679.9 742 53.4
CAN.G1156.53 Capsicum annuum HOM05D005219 ORTHO05D006451 2.0e-191 673.3 744 53.1
PSO170G0098 Papaver somniferum HOM05D005219 ORTHO05D006451 1.5e-189 667.2 737 52.1
SGA_v2.0_scaffold54G19585 Striga asiatica HOM05D005219 ORTHO05D006451 2.3e-187 659.8 717 49.2
PSO782G1219 Papaver somniferum HOM05D005219 ORTHO05D006451 5.8e-186 655.2 752 51.5
MSTRG.23501 Avicennia marina HOM05D005219 ORTHO05D006451 1.4e-184 650.6 674 52.7
Migut.H00795 Erythranthe guttata HOM05D005219 ORTHO05D006451 2.8e-180 636.3 719 49.7
Sc09g0004330 Simmondsia chinensis HOM05D005219 ORTHO05D006451 6.2e-180 635.2 647 54.1
HPP92_011421 Vanilla planifolia HOM05D005219 ORTHO05D006451 3.1e-179 632.9 726 49.7
Hma1.2p1_0057F.1_g032080 Hydrangea macrophylla HOM05D005219 ORTHO05D006451 6.8e-179 631.7 635 56.7
vmacro12733 Vaccinium macrocarpon HOM05D005219 ORTHO05D006451 3.4e-178 629.4 811 47.3
CDE06G1179 Ceratophyllum demersum HOM05D005219 ORTHO05D006451 4.4e-178 629.0 720 48.6
DCAR_019997 Daucus carota HOM05D005219 ORTHO05D006451 4.6e-175 619.0 722 48.2
SHI11418 Sapria himalayana HOM05D005219 ORTHO05D006451 1.6e-172 610.5 643 51.9
SGA_v2.0_scaffold211G42145 Striga asiatica HOM05D005219 ORTHO05D006451 4.0e-171 605.9 672 48.4
Atru.chr4.1215 Acer truncatum HOM05D005219 ORTHO05D006451 2.9e-169 599.7 556 61.0
Os02g0556900 Oryza sativa ssp. japonica HOM05D005219 ORTHO05D006451 2.1e-164 583.6 720 46.2
unitig_899.g14489 Utricularia gibba HOM05D005219 ORTHO05D006451 2.6e-162 576.6 716 47.1
SEGI_19215 Sequoiadendron giganteum HOM05D005219 ORTHO05D006451 1.2e-151 541.2 766 42.4
Sp6g34240 Schrenkiella parvula HOM05D005219 ORTHO05D006451 9.9e-146 521.5 516 52.7
ATR0737G007 Amborella trichopoda HOM05D005219 ORTHO05D006451 1.3e-142 511.1 685 43.9
Zm00001eb182070 Zea mays HOM05D005219 ORTHO05D006451 2.5e-136 490.3 672 43.8
Mapoly0096s0060 Marchantia polymorpha HOM05D005219 ORTHO05D006451 6.9e-131 472.2 817 37.6
MBI07_g10939_MAGBIO Magnolia biondii HOM05D005219 ORTHO05D006451 3.3e-125 453.4 741 41.4
Pp3c2_17910 Physcomitrium patens HOM05D005219 ORTHO05D006451 8.2e-124 448.7 779 39.2
CDE08G1591 Ceratophyllum demersum HOM05D005219 ORTHO05D006451 1.0e-118 431.8 721 39.0
Pp3c1_29080 Physcomitrium patens HOM05D005219 ORTHO05D006451 8.8e-118 428.7 774 37.5
ATR1136G012 Amborella trichopoda HOM05D005219 ORTHO05D006451 4.7e-95 353.2 881 31.2
AagrBONN_evm.TU.Sc2ySwM_344.1599 Anthoceros agrestis HOM05D005219 ORTHO05D006451 4.0e-94 350.1 551 39.6
Pp3c1_29082 Physcomitrium patens HOM05D005219 ORTHO05D006451 3.2e-88 330.5 520 38.8
SMO144G0202 Selaginella moellendorffii HOM05D005219 ORTHO05D006451 4.1e-75 287.0 476 37.8
SMO169G0116 Selaginella moellendorffii HOM05D005219 ORTHO05D006451 4.7e-63 246.9 443 39.1
CBR_g15970 Chara braunii HOM05D005219 ORTHO05D006451 2.4e-59 234.6 675 29.3
Psat7g208160 Pisum sativum HOM05D005219 ORTHO05D006451 1.2e-55 222.2 211 55.5
Sp6g34250 Schrenkiella parvula HOM05D005219 ORTHO05D006451 3.3e-48 197.6 127 76.4
SMO169G0082 Selaginella moellendorffii HOM05D005219 ORTHO05D006451 4.0e-46 190.7 222 45.0
Haze_25418 Corylus avellana HOM05D005219 ORTHO05D006451 5.4e-43 180.3 98 90.8
Sabra01G0147700 Salix brachista HOM05D005219 ORTHO05D006451 1.0e-41 176.0 171 56.1
ATR0721G071 Amborella trichopoda HOM05D005219 ORTHO05D006451 6.6e-41 173.3 212 44.8
Os04g0439300 Oryza sativa ssp. japonica HOM05D005219 ORTHO05D006451 5.6e-40 170.2 154 56.5
Zm00001eb243850 Zea mays HOM05D000001 ORTHO05D000003 3.6e-39 167.5 310 38.1
Cpa.g.c42282 Carica papaya HOM05D005219 ORTHO05D006451 8.1e-39 166.4 95 78.9
Os04g0439400 Oryza sativa ssp. japonica HOM05D005219 ORTHO05D006451 6.0e-34 150.2 95 72.6
HPP92_027054 Vanilla planifolia HOM05D005219 ORTHO05D006451 1.5e-29 135.6 150 51.3
Sabra04G0089200 Salix brachista HOM05D005219 ORTHO05D006451 1.2e-26 125.9 130 54.6
VMungo1383G0740 Vigna mungo HOM05D005219 ORTHO05D011240 4.9e-20 104.0 95 58.9
PGR119G0862 Punica granatum HOM05D005219 ORTHO05D006451 3.2e-19 101.3 251 35.9
Glyma.07G026800 Glycine max HOM05D005219 ORTHO05D021551 1.0e-17 96.3 116 46.6
CBR_g31875 Chara braunii HOM05D028850 ORTHO05D006451 3.2e-11 74.7 429 25.2
Nitab4.5_0004359g0020 Nicotiana tabacum HOM05D001439 ORTHO05D002726 1.9e-08 65.5 137 32.1
CAN.G209.1 Capsicum annuum HOM05D001439 ORTHO05D002726 2.5e-08 65.1 56 55.4
Nitab4.5_0001955g0100 Nicotiana tabacum HOM05D001439 ORTHO05D002726 2.5e-08 65.1 137 32.1
Lj2C292T8 Lonicera japonica HOM05D001439 ORTHO05D002726 4.3e-08 64.3 78 44.9
Solyc07g053610.3 Solanum lycopersicum HOM05D001439 ORTHO05D002726 4.3e-08 64.3 56 55.4
Sopen07g027560 Solanum pennellii HOM05D001439 ORTHO05D002726 4.3e-08 64.3 56 55.4
ECA236G3003 Erigeron canadensis HOM05D001455 ORTHO05D001587 5.7e-08 63.9 73 47.9
EL10Ac9g20819 Beta vulgaris HOM05D001439 ORTHO05D002726 9.7e-08 63.2 83 43.4
DCAR_028055 Daucus carota HOM05D001439 ORTHO05D002726 9.7e-08 63.2 78 41.0
HanXRQChr04g0117141 Helianthus annuus HOM05D001439 ORTHO05D002726 9.7e-08 63.2 73 45.2
Nitab4.5_0005191g0050 Nicotiana tabacum HOM05D001439 ORTHO05D002726 1.3e-07 62.8 56 55.4
CBR_g38007 Chara braunii HOM05D001908 ORTHO05D001892 1.6e-07 62.4 282 28.4
Lsat_1_v5_gn_7_22781 Lactuca sativa HOM05D001439 ORTHO05D002726 1.6e-07 62.4 73 46.6
HanXRQChr15g0469531 Helianthus annuus HOM05D001439 ORTHO05D002726 2.8e-07 61.6 73 42.5
CAN.G529.57 Capsicum annuum HOM05D001439 ORTHO05D002726 3.7e-07 61.2 58 51.7
Hma1.2p1_0558F.1_g178470 Hydrangea macrophylla HOM05D001439 ORTHO05D002726 3.7e-07 61.2 58 51.7
Peaxi162Scf00845g00120 Petunia axillaris HOM05D001439 ORTHO05D002726 3.7e-07 61.2 58 51.7
Peaxi162Scf00926g00006 Petunia axillaris HOM05D001439 ORTHO05D002726 3.7e-07 61.2 78 39.7
SEGI_36901 Sequoiadendron giganteum HOM05D001312 ORTHO05D001832 3.7e-07 61.2 179 31.3
Sopen02g022560 Solanum pennellii HOM05D001439 ORTHO05D002726 8.2e-07 60.1 58 50.0
MSTRG.14322 Avicennia marina HOM05D001439 ORTHO05D002726 1.1e-06 59.7 78 42.3
MSTRG.7359 Avicennia marina HOM05D001439 ORTHO05D002726 1.1e-06 59.7 56 51.8
MELO3C007260.2 Cucumis melo HOM05D001439 ORTHO05D002726 1.4e-06 59.3 56 50.0
VMungo1080G0366 Vigna mungo HOM05D001312 ORTHO05D001832 1.4e-06 59.3 180 31.1
CsaV3_6G050410 Cucumis sativus L. HOM05D001439 ORTHO05D002726 1.8e-06 58.9 56 50.0
Migut.H01470 Erythranthe guttata HOM05D001439 ORTHO05D002726 1.8e-06 58.9 56 50.0
Hund07869 Selenicereus undatus HOM05D001439 ORTHO05D002726 1.8e-06 58.9 56 53.6
GSVIVG01020605001 Vitis vinifera HOM05D001439 ORTHO05D002726 1.8e-06 58.9 56 51.8
CDE10G1054 Ceratophyllum demersum HOM05D001439 ORTHO05D002726 2.4e-06 58.5 58 46.6
Lsat_1_v5_gn_8_133600 Lactuca sativa HOM05D001439 ORTHO05D002726 2.4e-06 58.5 56 48.2
MD10G1289100 Malus domestica HOM05D001439 ORTHO05D002726 2.4e-06 58.5 56 51.8
Manes.13G141800 Manihot esculenta HOM05D001439 ORTHO05D002726 2.4e-06 58.5 78 41.0
Oeu016007.1 Olea europaea HOM05D001439 ORTHO05D002726 2.4e-06 58.5 58 50.0
Gohir.A12G139300 Gossypium hirsutum HOM05D001439 ORTHO05D002726 3.1e-06 58.2 78 42.3
Gohir.D12G143800 Gossypium hirsutum HOM05D001439 ORTHO05D002726 3.1e-06 58.2 78 42.3
Gorai.008G155100 Gossypium raimondii HOM05D001439 ORTHO05D002726 3.1e-06 58.2 78 42.3
Solyc02g077660.3 Solanum lycopersicum HOM05D001439 ORTHO05D002726 3.1e-06 58.2 58 50.0
THA.LOC104826040 Tarenaya hassleriana HOM05D001439 ORTHO05D002726 3.1e-06 58.2 69 42.0
CARHR179080 Cardamine hirsuta HOM05D001439 ORTHO05D002726 5.3e-06 57.4 99 36.4
FAN21G0276 Fragaria x ananassa HOM05D001439 ORTHO05D002726 5.3e-06 57.4 56 50.0
PSO063G1518 Papaver somniferum HOM05D001312 ORTHO05D001832 5.3e-06 57.4 161 29.8
SGA_v2.0_scaffold29G12279 Striga asiatica HOM05D001312 ORTHO05D001832 6.9e-06 57.0 219 26.9
SGA_v2.0_scaffold34G13921 Striga asiatica HOM05D001439 ORTHO05D002726 6.9e-06 57.0 78 38.5


User provided reference genes

Program Settings