Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.03G074500 Carya illinoinensis HOM05D006010 ORTHO05D007381 2.0e-162 575.9 330 100.0
Cfa007784 Carpinus fangiana HOM05D006010 ORTHO05D007381 1.3e-116 423.7 334 76.9
Haze_14288 Corylus avellana HOM05D006010 ORTHO05D007381 3.8e-116 422.2 334 76.9
QL12p000853 Quercus lobata HOM05D006010 ORTHO05D007381 9.3e-115 417.5 382 65.2
Actinidia35721 Actinidia chinensis HOM05D006010 ORTHO05D007381 1.7e-100 370.2 336 64.3
Prupe.2G048000 Prunus persica HOM05D006010 ORTHO05D007381 7.1e-99 364.8 330 62.7
Ca_05962_v3 Cicer arietinum L. HOM05D006010 ORTHO05D007381 1.1e-96 357.5 332 63.0
Lalb_Chr10g0104261 Lupinus albus HOM05D006010 ORTHO05D007381 3.1e-94 349.4 332 61.1
Sed0022983 Sechium edule HOM05D006010 ORTHO05D007381 3.1e-94 349.4 329 60.2
Medtr5g077800 Medicago truncatula HOM05D006010 ORTHO05D007381 4.0e-94 349.0 332 62.0
MD02G1273300 Malus domestica HOM05D006010 ORTHO05D007381 6.9e-94 348.2 330 61.8
Rhsim10G0180400 Rhododendron simsii HOM05D006010 ORTHO05D007381 1.5e-93 347.1 334 60.8
CsaV3_2G017210 Cucumis sativus L. HOM05D006010 ORTHO05D007381 2.0e-93 346.7 332 61.4
TWI53G0527 Tripterygium wilfordii HOM05D006010 ORTHO05D007381 1.7e-92 343.6 333 60.4
Phvul.004G098200 Phaseolus vulgaris HOM05D006010 ORTHO05D007381 1.9e-91 340.1 331 60.4
Lj4g0009716 Lotus japonicus HOM05D006010 ORTHO05D007381 1.6e-90 337.0 332 60.8
MELO3C020924.2 Cucumis melo HOM05D006010 ORTHO05D007381 2.7e-90 336.3 332 60.2
RcHm_v2.0_Chr3g0492111 Rosa chinensis HOM05D006010 ORTHO05D007381 1.8e-89 333.6 331 58.3
Potri.017G135500 Populus trichocarpa HOM05D006010 ORTHO05D007381 6.7e-89 331.6 337 59.6
Sed0003139 Sechium edule HOM05D006010 ORTHO05D007381 8.7e-89 331.3 333 58.9
Cc02_g11480 Coffea canephora HOM05D006010 ORTHO05D007381 4.3e-88 328.9 330 58.2
Ciclev10026000m.g Citrus clementina HOM05D006010 ORTHO05D007381 9.7e-88 327.8 344 60.8
Psat2g045640 Pisum sativum HOM05D006010 ORTHO05D007381 1.6e-87 327.0 335 58.8
Cpa.g.sc116.81 Carica papaya HOM05D006010 ORTHO05D007381 2.2e-87 326.6 375 53.9
FvH4_1g30030 Fragaria vesca HOM05D006010 ORTHO05D007381 3.1e-86 322.8 332 57.5
GSVIVG01015997001 Vitis vinifera HOM05D006010 ORTHO05D007381 9.0e-86 321.2 405 51.9
FAN19G0427 Fragaria x ananassa HOM05D006010 ORTHO05D007381 1.2e-85 320.9 332 57.2
VMungo0464G0699 Vigna mungo HOM05D006010 ORTHO05D007381 2.2e-84 316.6 301 59.8
PGR004G1862 Punica granatum HOM05D006010 ORTHO05D007381 6.5e-84 315.1 339 56.3
Sabra17G0111300 Salix brachista HOM05D006010 ORTHO05D007381 1.9e-83 313.5 346 56.4
Sabra17G0114300 Salix brachista HOM05D006010 ORTHO05D007381 2.5e-83 313.2 346 56.4
FAN28G0351 Fragaria x ananassa HOM05D006010 ORTHO05D007381 2.7e-82 309.7 342 55.3
arahy.Tifrunner.gnm1.ann1.RW4QB8 Arachis hypogaea HOM05D006010 ORTHO05D007381 3.6e-82 309.3 332 57.5
arahy.Tifrunner.gnm1.ann1.14A9Q3 Arachis hypogaea HOM05D006010 ORTHO05D007381 6.1e-82 308.5 332 56.9
TPR.G23647 Trifolium pratense HOM05D006010 ORTHO05D007381 1.0e-81 307.8 302 59.6
arahy.Tifrunner.gnm1.ann1.ZG5C6W Arachis hypogaea HOM05D006010 ORTHO05D007381 3.9e-81 305.8 333 57.4
ClCG05G010670 Citrullus lanatus HOM05D006010 ORTHO05D007381 5.1e-81 305.4 331 55.0
Peaxi162Scf00464g00430 Petunia axillaris HOM05D006010 ORTHO05D007381 6.7e-81 305.1 330 55.8
Atru.chr11.39 Acer truncatum HOM05D006010 ORTHO05D007381 3.3e-80 302.8 337 56.4
Nn3g17023 Nelumbo nucifera HOM05D006010 ORTHO05D007381 3.3e-80 302.8 353 56.4
Hma1.2p1_0249F.1_g102390 Hydrangea macrophylla HOM05D006010 ORTHO05D007381 1.7e-79 300.4 334 56.0
MSTRG.15654 Avicennia marina HOM05D006010 ORTHO05D007381 2.8e-79 299.7 342 54.4
EL10Ac3g05516 Beta vulgaris HOM05D006010 ORTHO05D007381 8.2e-79 298.1 328 54.9
Glyma.02G082600 Glycine max HOM05D006010 ORTHO05D007381 3.1e-78 296.2 331 54.4
PGSC0003DMG400013242 Solanum tuberosum HOM05D006010 ORTHO05D007381 3.1e-78 296.2 330 55.2
FAN28G1345 Fragaria x ananassa HOM05D006010 ORTHO05D007381 4.1e-78 295.8 332 53.6
Duzib235G0102 Durio zibethinus HOM05D006010 ORTHO05D007381 5.3e-78 295.4 346 54.6
Glyma.16G168300 Glycine max HOM05D006010 ORTHO05D007381 5.3e-78 295.4 331 53.8
Eucgr.F02881 Eucalyptus grandis HOM05D006010 ORTHO05D007381 9.1e-78 294.7 332 55.4
Sopen11g006280 Solanum pennellii HOM05D006010 ORTHO05D007381 1.2e-77 294.3 330 54.2
Actinidia28796 Actinidia chinensis HOM05D006010 ORTHO05D007381 2.6e-77 293.1 303 55.8
SalBow1G7757 Salvia bowleyana HOM05D006010 ORTHO05D007381 1.7e-76 290.4 336 53.6
CAN.G222.64 Capsicum annuum HOM05D006010 ORTHO05D007381 2.2e-76 290.0 330 52.7
Lsat_1_v5_gn_3_65880 Lactuca sativa HOM05D006010 ORTHO05D007381 1.9e-75 287.0 332 53.9
CANSAT01G2297 Cannabis sativa HOM05D006010 ORTHO05D007381 7.9e-74 281.6 361 49.9
MD07G1042200 Malus domestica HOM05D006010 ORTHO05D007381 5.1e-73 278.9 330 53.0
FAN23G2851 Fragaria x ananassa HOM05D006010 ORTHO05D007381 1.1e-72 277.7 338 51.5
Hund11982 Selenicereus undatus HOM05D006010 ORTHO05D007381 2.0e-72 276.9 328 51.5
Migut.K00936 Erythranthe guttata HOM05D006010 ORTHO05D007381 7.4e-72 275.0 333 52.3
ECA236G4224 Erigeron canadensis HOM05D006010 ORTHO05D007381 9.7e-72 274.6 329 51.4
Oeu048940.2 Olea europaea HOM05D006010 ORTHO05D007381 9.7e-72 274.6 362 48.9
AUR62016215 Chenopodium quinoa HOM05D006010 ORTHO05D007381 1.8e-70 270.4 328 52.7
Thecc.06G019600 Theobroma cacao HOM05D006010 ORTHO05D007381 1.8e-70 270.4 375 48.5
TAR623G0083 Trochodendron aralioides HOM05D006010 ORTHO05D007381 3.5e-69 266.2 366 52.2
vmacro20589 Vaccinium macrocarpon HOM05D006010 ORTHO05D007381 5.0e-68 262.3 357 49.3
unitig_0.g1692 Utricularia gibba HOM05D006010 ORTHO05D007381 6.1e-66 255.4 348 48.3
CDE09G0547 Ceratophyllum demersum HOM05D006010 ORTHO05D007381 8.0e-66 255.0 386 45.3
HanXRQChr15g0482991 Helianthus annuus HOM05D006010 ORTHO05D007381 3.9e-65 252.7 331 49.8
Sed0026765 Sechium edule HOM05D006010 ORTHO05D007381 5.2e-65 252.3 328 49.1
GSVIVG01015998001 Vitis vinifera HOM05D006010 ORTHO05D007381 3.3e-64 249.6 289 55.7
THA.LOC104827184 Tarenaya hassleriana HOM05D006010 ORTHO05D007381 2.2e-63 246.9 373 45.0
FAN26G2228 Fragaria x ananassa HOM05D006010 ORTHO05D007381 1.8e-62 243.8 287 54.0
Sc22g0001300 Simmondsia chinensis HOM05D006010 ORTHO05D007381 3.1e-62 243.0 282 52.5
Solyc11g011490.2 Solanum lycopersicum HOM05D006010 ORTHO05D007381 5.3e-62 242.3 278 53.2
AUR62039273 Chenopodium quinoa HOM05D006010 ORTHO05D007381 1.6e-61 240.7 291 51.9
DCAR_014157 Daucus carota HOM05D006010 ORTHO05D007381 6.1e-58 228.8 331 45.3
COL.COLO4_31121 Corchorus olitorius HOM05D006010 ORTHO05D007381 9.8e-56 221.5 373 42.4
Sp3g01890 Schrenkiella parvula HOM05D006010 ORTHO05D007381 8.3e-55 218.4 344 45.3
GSVIVG01016007001 Vitis vinifera HOM05D006010 ORTHO05D007381 1.8e-54 217.2 281 52.3
TWI74G0222 Tripterygium wilfordii HOM05D006010 ORTHO05D007381 5.4e-54 215.7 265 52.8
SGA_v2.0_scaffold115G32097 Striga asiatica HOM05D006010 ORTHO05D007381 7.0e-54 215.3 320 45.0
Ah.05g176710 Amaranthus hybridus HOM05D006010 ORTHO05D007381 3.5e-53 213.0 391 41.4
BcaC05g30500 Brassica carinata HOM05D000919 ORTHO05D004442 3.2e-51 206.5 342 43.3
Manes.07G077600 Manihot esculenta HOM05D006010 ORTHO05D007381 4.2e-51 206.1 224 57.1
Gohir.A10G157800 Gossypium hirsutum HOM05D006010 ORTHO05D007381 7.2e-51 205.3 421 39.0
C09p75990 Brassica napus HOM05D006010 ORTHO05D007381 6.1e-50 202.2 300 46.0
BolC5t35058H Brassica oleracea HOM05D006010 ORTHO05D007381 6.1e-50 202.2 300 46.0
Lj2A517G41 Lonicera japonica HOM05D006010 ORTHO05D007381 1.0e-49 201.4 239 52.7
AT3G02860 Arabidopsis thaliana HOM05D006010 ORTHO05D007381 2.3e-49 200.3 274 50.0
Aa31LG5G13330 Aethionema arabicum HOM05D006010 ORTHO05D007381 5.2e-49 199.1 354 41.8
Carub.0003s0196 Capsella rubella HOM05D006010 ORTHO05D007381 6.8e-49 198.7 305 44.3
AL3G12280 Arabidopsis lyrata HOM05D006010 ORTHO05D007381 1.5e-48 197.6 269 49.1
Gorai.011G090700 Gossypium raimondii HOM05D006010 ORTHO05D007381 2.0e-48 197.2 423 38.1
A05p44250 Brassica napus HOM05D006010 ORTHO05D007381 2.6e-48 196.8 299 45.5
BraA06t23281Z Brassica rapa HOM05D000919 ORTHO05D004442 2.6e-48 196.8 299 45.5
Gohir.D10G083400 Gossypium hirsutum HOM05D006010 ORTHO05D007381 5.7e-48 195.7 425 38.1
Os05g0495100 Oryza sativa ssp. japonica HOM05D006010 ORTHO05D007381 2.8e-47 193.4 376 39.4
Thhalv10021193m.g Eutrema salsugineum HOM05D006010 ORTHO05D007381 1.4e-46 191.0 264 46.6
Zm00001eb291600 Zea mays HOM05D006010 ORTHO05D007381 1.8e-46 190.7 376 39.9
GSVIVG01016005001 Vitis vinifera HOM05D006010 ORTHO05D007381 3.1e-46 189.9 184 63.6
Ca_05837_v3 Cicer arietinum L. HOM05D006010 ORTHO05D007381 5.9e-45 185.7 194 59.8
CARHR076870 Cardamine hirsuta HOM05D006010 ORTHO05D007381 2.3e-44 183.7 304 42.1
TPR.G23699 Trifolium pratense HOM05D005584 ORTHO05D006809 1.8e-41 174.1 203 51.2
FAN25G0538 Fragaria x ananassa HOM05D006010 ORTHO05D007381 3.0e-41 173.3 157 65.6
CSS0039891 Camellia sinensis var. sinensis HOM05D006010 ORTHO05D007381 2.0e-40 170.6 138 65.9
AagrBONN_evm.TU.Sc2ySwM_369.381 Anthoceros agrestis HOM05D006010 ORTHO05D007381 1.4e-38 164.5 283 43.8
Ca_05839_v3 Cicer arietinum L. HOM05D006010 ORTHO05D007381 1.6e-37 161.0 134 62.7
ATR0320G006 Amborella trichopoda HOM05D006010 ORTHO05D007381 2.6e-32 143.7 158 56.3
SEGI_17538 Sequoiadendron giganteum HOM05D006010 ORTHO05D007381 7.5e-32 142.1 240 42.1
PSO017G1892 Papaver somniferum HOM05D006010 ORTHO05D007381 2.2e-31 140.6 369 35.5
SHI30126 Sapria himalayana HOM05D006010 ORTHO05D007381 4.9e-31 139.4 148 58.8
CSS0001849 Camellia sinensis var. sinensis HOM05D006010 ORTHO05D007381 5.4e-30 136.0 110 69.1
CSS0044569 Camellia sinensis var. sinensis HOM05D006010 ORTHO05D007381 5.4e-30 136.0 110 69.1
Lj2A517G40 Lonicera japonica HOM05D006010 ORTHO05D007381 3.5e-29 133.3 103 73.8
PSO478G0898 Papaver somniferum HOM05D006010 ORTHO05D007381 1.7e-28 131.0 351 34.5
Mapoly0044s0136 Marchantia polymorpha HOM05D006010 ORTHO05D007381 2.3e-28 130.6 334 34.7
Aqoxy3G00232 Aquilegia oxysepala HOM05D006010 ORTHO05D007381 4.3e-27 126.3 274 39.4
Nitab4.5_0011135g0050 Nicotiana tabacum HOM05D006010 ORTHO05D007381 2.3e-25 120.6 140 55.7
Sed0023512 Sechium edule HOM05D006010 ORTHO05D007381 6.8e-25 119.0 68 79.4
Sed0018686 Sechium edule HOM05D006010 ORTHO05D007381 8.9e-25 118.6 65 81.5
ATR0320G008 Amborella trichopoda HOM05D006010 ORTHO05D007381 1.1e-22 111.7 139 45.3
FAN21G0982 Fragaria x ananassa HOM05D006010 ORTHO05D007381 1.4e-22 111.3 156 46.2
GSVIVG01016036001 Vitis vinifera HOM05D006010 ORTHO05D007381 4.6e-21 106.3 70 74.3
SHI30124 Sapria himalayana HOM05D006010 ORTHO05D007381 8.1e-18 95.5 118 44.1
Pp3c12_7630 Physcomitrium patens HOM05D006010 ORTHO05D007381 2.6e-16 90.5 140 46.4
Glyma.14G212900 Glycine max HOM05D026408 ORTHO05D029776 6.0e-13 79.3 146 36.3
VMungo0647G0061 Vigna mungo HOM05D026408 ORTHO05D029776 4.7e-10 69.7 145 31.7
TPR.G36575 Trifolium pratense HOM05D006010 ORTHO05D007381 3.1e-09 67.0 89 50.6
CSS0015748 Camellia sinensis var. sinensis HOM05D006010 ORTHO05D007381 1.2e-08 65.1 103 44.7
CSS0044039 Camellia sinensis var. sinensis HOM05D006010 ORTHO05D007381 1.2e-08 65.1 103 44.7
Phvul.008G238000 Phaseolus vulgaris HOM05D026408 ORTHO05D029776 2.0e-08 64.3 179 30.2
SEGI_38635 Sequoiadendron giganteum HOM05D006010 ORTHO05D007381 7.6e-08 62.4 77 45.5
QL06p002867 Quercus lobata HOM05D006010 ORTHO05D007381 1.9e-06 57.8 62 48.4


User provided reference genes

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