Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.02G147500 Carya illinoinensis HOM05D003995 ORTHO05D004800 0.0e+00 1354.3 704 100.0
CiPaw.01G233700 Carya illinoinensis HOM05D003995 ORTHO05D004800 0.0e+00 1092.4 705 82.1
Cfa002115 Carpinus fangiana HOM05D003995 ORTHO05D004800 0.0e+00 1080.9 707 80.2
Haze_16334 Corylus avellana HOM05D003995 ORTHO05D004800 4.8e-310 1067.4 724 78.2
QL05p021104 Quercus lobata HOM05D003995 ORTHO05D004800 2.2e-307 1058.5 708 77.7
GSVIVG01017039001 Vitis vinifera HOM05D003995 ORTHO05D004800 1.2e-276 956.4 711 71.3
Thecc.06G096000 Theobroma cacao HOM05D003995 ORTHO05D004800 1.5e-276 956.1 712 71.8
Prupe.3G063200 Prunus persica HOM05D003995 ORTHO05D004800 2.1e-273 945.7 710 70.8
COL.COLO4_30474 Corchorus olitorius HOM05D003995 ORTHO05D004800 3.9e-272 941.4 709 71.5
FvH4_6g32000 Fragaria vesca HOM05D003995 ORTHO05D004800 3.7e-270 934.9 708 69.6
MD09G1207100 Malus domestica HOM05D003995 ORTHO05D004800 5.0e-267 924.5 712 68.8
FAN05G2434 Fragaria x ananassa HOM05D003995 ORTHO05D004800 6.1e-265 917.5 726 67.5
Manes.04G131700 Manihot esculenta HOM05D003995 ORTHO05D004800 9.1e-261 903.7 712 68.0
FAN14G0476 Fragaria x ananassa HOM05D003995 ORTHO05D004800 4.5e-260 901.4 708 67.9
MD17G1187800 Malus domestica HOM05D003995 ORTHO05D004800 4.5e-260 901.4 719 67.5
Potri.001G187000 Populus trichocarpa HOM05D003995 ORTHO05D004800 7.7e-260 900.6 712 68.8
Gohir.A02G119100 Gossypium hirsutum HOM05D003995 ORTHO05D004800 8.5e-259 897.1 712 68.8
Gohir.A05G128000 Gossypium hirsutum HOM05D003995 ORTHO05D004800 5.5e-258 894.4 712 68.3
Gorai.009G136200 Gossypium raimondii HOM05D003995 ORTHO05D004800 5.5e-258 894.4 712 68.5
TAR624G1104 Trochodendron aralioides HOM05D003995 ORTHO05D004800 3.6e-257 891.7 717 68.1
Gohir.D03G059900 Gossypium hirsutum HOM05D003995 ORTHO05D004800 4.7e-257 891.3 712 69.0
Gohir.D05G132500 Gossypium hirsutum HOM05D003995 ORTHO05D004800 2.3e-256 889.0 712 68.3
CANSAT56G4226 Cannabis sativa HOM05D003995 ORTHO05D004800 1.2e-255 886.7 707 67.8
TWI75G1811 Tripterygium wilfordii HOM05D003995 ORTHO05D004800 2.0e-255 885.9 706 67.7
Atru.chr1.3467 Acer truncatum HOM05D003995 ORTHO05D004800 4.4e-255 884.8 697 68.3
FAN02G0974 Fragaria x ananassa HOM05D003995 ORTHO05D004800 9.7e-255 883.6 708 66.4
Glyma.07G017700 Glycine max HOM05D003995 ORTHO05D004800 1.7e-254 882.9 713 66.3
TWI18G0079 Tripterygium wilfordii HOM05D003995 ORTHO05D004800 5.3e-253 877.9 709 66.6
TAR102G0002 Trochodendron aralioides HOM05D003995 ORTHO05D004800 1.2e-252 876.7 719 66.9
Gorai.003G063800 Gossypium raimondii HOM05D003995 ORTHO05D004800 2.0e-252 875.9 698 68.9
Duzib235G0154 Durio zibethinus HOM05D003995 ORTHO05D004800 2.7e-252 875.5 697 67.7
Lj3g0012728 Lotus japonicus HOM05D003995 ORTHO05D004800 2.7e-252 875.5 711 65.5
Manes.11G036200 Manihot esculenta HOM05D003995 ORTHO05D004800 2.2e-251 872.5 733 65.2
Actinidia21699 Actinidia chinensis HOM05D003995 ORTHO05D004800 1.1e-250 870.2 712 65.0
Ciclev10027380m.g Citrus clementina HOM05D003995 ORTHO05D004800 3.2e-250 868.6 736 65.1
TWI12G0239 Tripterygium wilfordii HOM05D003995 ORTHO05D004800 4.2e-250 868.2 709 66.4
CSS0043166 Camellia sinensis var. sinensis HOM05D003995 ORTHO05D004800 2.1e-249 865.9 713 65.8
Hma1.2p1_1689F.1_g297670 Hydrangea macrophylla HOM05D003995 ORTHO05D004800 6.1e-249 864.4 710 65.6
CSS0042187 Camellia sinensis var. sinensis HOM05D003995 ORTHO05D004800 1.8e-248 862.8 713 66.1
VMungo0331G0049 Vigna mungo HOM05D003995 ORTHO05D004800 1.5e-247 859.8 711 65.3
Cpa.g.sc109.33 Carica papaya HOM05D003995 ORTHO05D004800 3.4e-247 858.6 696 66.8
FAN09G2208 Fragaria x ananassa HOM05D003995 ORTHO05D004800 4.4e-247 858.2 708 65.4
Dinv30461 Davidia involucrata HOM05D003995 ORTHO05D004800 1.3e-246 856.7 708 66.5
Phvul.010G147000 Phaseolus vulgaris HOM05D003995 ORTHO05D004800 4.8e-246 854.7 710 64.9
Lalb_Chr01g0013091 Lupinus albus HOM05D003995 ORTHO05D004800 2.9e-243 845.5 707 64.8
arahy.Tifrunner.gnm1.ann1.8U94IH Arachis hypogaea HOM05D003995 ORTHO05D004800 6.5e-243 844.3 715 65.0
Lalb_Chr25g0280081 Lupinus albus HOM05D003995 ORTHO05D004800 7.2e-242 840.9 708 64.8
Dinv38000 Davidia involucrata HOM05D003995 ORTHO05D004800 1.2e-241 840.1 697 66.3
Medtr8g013720 Medicago truncatula HOM05D003995 ORTHO05D004800 2.6e-239 832.4 724 63.4
Hma1.2p1_0659F.1_g197350 Hydrangea macrophylla HOM05D003995 ORTHO05D004800 7.5e-239 830.9 714 64.8
Ca_11524_v3 Cicer arietinum L. HOM05D003995 ORTHO05D004800 3.1e-237 825.5 715 63.5
TPR.G14825 Trifolium pratense HOM05D003995 ORTHO05D004800 3.5e-236 822.0 719 62.7
Psat4g198440 Pisum sativum HOM05D003995 ORTHO05D004800 1.5e-234 816.6 721 61.3
Aqoxy7G01498 Aquilegia oxysepala HOM05D003995 ORTHO05D004800 7.3e-234 814.3 716 62.4
Glyma.08G202900 Glycine max HOM05D003995 ORTHO05D004800 1.0e-232 810.4 712 62.4
CsaV3_3G023750 Cucumis sativus L. HOM05D003995 ORTHO05D004800 5.2e-232 808.1 711 63.9
Gorai.010G229800 Gossypium raimondii HOM05D003995 ORTHO05D004800 6.8e-232 807.7 713 64.2
Gohir.D06G197450 Gossypium hirsutum HOM05D003995 ORTHO05D004800 3.4e-231 805.4 713 64.1
Cc00_g10390 Coffea canephora HOM05D003995 ORTHO05D004800 3.2e-229 798.9 711 62.3
PGR102G1287 Punica granatum HOM05D003995 ORTHO05D004800 3.2e-229 798.9 712 61.2
Eucgr.F03056 Eucalyptus grandis HOM05D003995 ORTHO05D004800 5.4e-229 798.1 710 62.0
Sc12g0009570 Simmondsia chinensis HOM05D003995 ORTHO05D004800 2.0e-228 796.2 712 60.5
CSS0032416 Camellia sinensis var. sinensis HOM05D003995 ORTHO05D004800 4.6e-228 795.0 699 63.2
Hund06648 Selenicereus undatus HOM05D003995 ORTHO05D004800 2.3e-224 782.7 713 60.3
Sed0011470 Sechium edule HOM05D003995 ORTHO05D004800 4.0e-224 781.9 709 61.1
Sed0003559 Sechium edule HOM05D003995 ORTHO05D004800 4.4e-223 778.5 713 62.7
Peaxi162Scf00090g00073 Petunia axillaris HOM05D003995 ORTHO05D004800 3.7e-222 775.4 710 60.7
PSO210G6330 Papaver somniferum HOM05D003995 ORTHO05D004800 4.9e-222 775.0 725 60.6
PSO210G6397 Papaver somniferum HOM05D003995 ORTHO05D004800 1.2e-220 770.4 723 60.2
PGR102G1422 Punica granatum HOM05D003995 ORTHO05D004800 2.7e-220 769.2 714 61.8
THA.LOC104817968 Tarenaya hassleriana HOM05D003995 ORTHO05D004800 1.7e-219 766.5 706 60.9
Eucgr.J02949 Eucalyptus grandis HOM05D003995 ORTHO05D004800 3.0e-219 765.8 712 60.4
Oeu050081.1 Olea europaea HOM05D003995 ORTHO05D004800 3.0e-219 765.8 711 60.9
Nitab4.5_0002549g0020 Nicotiana tabacum HOM05D003995 ORTHO05D004800 1.2e-217 760.4 707 59.5
Oeu017626.1 Olea europaea HOM05D003995 ORTHO05D004800 3.1e-216 755.7 712 59.7
Aa31LG8G3420 Aethionema arabicum HOM05D003995 ORTHO05D004800 4.0e-216 755.4 713 59.7
THA.LOC104810534 Tarenaya hassleriana HOM05D003995 ORTHO05D004800 6.8e-216 754.6 707 60.0
Thhalv10020187m.g Eutrema salsugineum HOM05D003995 ORTHO05D004800 7.5e-215 751.1 712 59.8
Carub.0003s1602 Capsella rubella HOM05D003995 ORTHO05D004800 1.3e-214 750.4 715 60.7
AL3G29010 Arabidopsis lyrata HOM05D003995 ORTHO05D004800 1.7e-214 750.0 716 59.6
Sp3g14640 Schrenkiella parvula HOM05D003995 ORTHO05D004800 2.2e-214 749.6 716 59.5
EL10Ac9g22110 Beta vulgaris HOM05D003995 ORTHO05D004800 3.7e-214 748.8 711 58.8
CAN.G60.5 Capsicum annuum HOM05D003995 ORTHO05D004800 8.3e-214 747.7 711 59.2
MBI04_g27074_MAGBIO Magnolia biondii HOM05D003266 ORTHO05D003718 9.2e-213 744.2 722 59.6
Rhsim08G0225700 Rhododendron simsii HOM05D003995 ORTHO05D004800 1.2e-212 743.8 714 59.1
AUR62031875 Chenopodium quinoa HOM05D003995 ORTHO05D004800 1.6e-212 743.4 714 58.3
AT3G16270 Arabidopsis thaliana HOM05D003995 ORTHO05D004800 2.3e-211 739.6 715 59.3
PGSC0003DMG400008535 Solanum tuberosum HOM05D003995 ORTHO05D004800 1.1e-210 737.3 716 58.5
DCAR_019957 Daucus carota HOM05D003995 ORTHO05D004800 1.5e-210 736.9 708 57.6
CARHR091480 Cardamine hirsuta HOM05D003995 ORTHO05D004800 6.2e-209 731.5 717 59.1
Glyma.13G355800 Glycine max HOM05D003995 ORTHO05D004800 6.2e-209 731.5 722 57.6
BcaB06g25717 Brassica carinata HOM05D003995 ORTHO05D004800 2.4e-208 729.6 712 58.1
AUR62022169 Chenopodium quinoa HOM05D003995 ORTHO05D004800 2.0e-207 726.5 709 57.7
BcaC05g28900 Brassica carinata HOM05D003995 ORTHO05D004800 4.4e-207 725.3 712 58.1
BolC5t33775H Brassica oleracea HOM05D003995 ORTHO05D004800 4.4e-207 725.3 712 58.1
BraA05t22150Z Brassica rapa HOM05D003995 ORTHO05D004800 2.9e-206 722.6 712 58.3
C05p50240 Brassica napus HOM05D003995 ORTHO05D004800 1.2e-204 717.2 712 58.0
A05p33250 Brassica napus HOM05D003995 ORTHO05D004800 2.7e-204 716.1 713 57.5
MSTRG.23509 Avicennia marina HOM05D003995 ORTHO05D004800 3.0e-203 712.6 712 56.3
Migut.H00960 Erythranthe guttata HOM05D003995 ORTHO05D004800 1.5e-202 710.3 719 56.5
Nitab4.5_0004354g0010 Nicotiana tabacum HOM05D003995 ORTHO05D004800 4.0e-200 702.2 867 49.4
Ah.01g005620 Amaranthus hybridus HOM05D003995 ORTHO05D004800 1.5e-199 700.3 717 56.1
Sopen04g017970 Solanum pennellii HOM05D003995 ORTHO05D004800 4.9e-198 695.3 713 56.8
ATR0705G117 Amborella trichopoda HOM05D003995 ORTHO05D004800 4.2e-197 692.2 728 56.5
Solyc04g047770.3 Solanum lycopersicum HOM05D003995 ORTHO05D004800 5.4e-197 691.8 713 56.7
MELO3C012986.2 Cucumis melo HOM05D003995 ORTHO05D004800 2.7e-196 689.5 641 60.5
Ah.01g021840 Amaranthus hybridus HOM05D003995 ORTHO05D004800 3.3e-194 682.6 700 56.4
SGA_v2.0_scaffold44G16540 Striga asiatica HOM05D003995 ORTHO05D004800 1.6e-193 680.2 714 55.7
Nn2g11632 Nelumbo nucifera HOM05D003995 ORTHO05D004800 3.6e-193 679.1 714 55.9
Lsat_1_v5_gn_2_39201 Lactuca sativa HOM05D003995 ORTHO05D004800 1.5e-191 673.7 719 55.4
Phvul.005G170500 Phaseolus vulgaris HOM05D003995 ORTHO05D004800 6.0e-188 661.8 721 53.8
QL04p048641 Quercus lobata HOM05D003995 ORTHO05D004800 6.0e-188 661.8 604 61.1
VMungo1080G0563 Vigna mungo HOM05D003995 ORTHO05D004800 1.3e-187 660.6 708 53.7
HanXRQChr14g0434431 Helianthus annuus HOM05D003995 ORTHO05D004800 7.4e-186 654.8 717 55.0
CDE02G3541 Ceratophyllum demersum HOM05D003995 ORTHO05D004800 3.1e-184 649.4 717 52.4
CDE08G1118 Ceratophyllum demersum HOM05D003995 ORTHO05D004800 9.0e-184 647.9 715 52.9
SHI11063 Sapria himalayana HOM05D003995 ORTHO05D004800 4.8e-177 625.5 698 53.6
HanXRQChr01g0017801 Helianthus annuus HOM05D003995 ORTHO05D004800 6.9e-176 621.7 715 52.2
SalBow1G2060 Salvia bowleyana HOM05D003995 ORTHO05D004800 4.2e-173 612.5 739 49.7
Os01g0232400 Oryza sativa ssp. japonica HOM05D003995 ORTHO05D004800 9.3e-173 611.3 714 52.2
Zm00001eb339300 Zea mays HOM05D003995 ORTHO05D004800 1.9e-170 603.6 709 52.0
ECA248G2833 Erigeron canadensis HOM05D003995 ORTHO05D004800 2.8e-169 599.7 698 52.6
Zm00001eb119170 Zea mays HOM05D003995 ORTHO05D004800 3.4e-167 592.8 707 51.1
HPP92_008092 Vanilla planifolia HOM05D003995 ORTHO05D004800 3.3e-162 576.2 738 50.7
MBI01_g24453_MAGBIO Magnolia biondii HOM05D003995 ORTHO05D004800 3.2e-157 559.7 696 50.4
Nn3g18163 Nelumbo nucifera HOM05D003995 ORTHO05D004800 1.0e-155 554.7 378 76.7
Gohir.A06G188875 Gossypium hirsutum HOM05D003995 ORTHO05D004800 5.7e-146 522.3 373 75.9
SEGI_23305 Sequoiadendron giganteum HOM05D003995 ORTHO05D004800 1.9e-141 507.3 729 46.0
RcHm_v2.0_Chr2g0139591 Rosa chinensis HOM05D003995 ORTHO05D004800 4.8e-137 492.7 319 81.2
SalBow1G1048 Salvia bowleyana HOM05D003995 ORTHO05D004800 8.5e-134 481.9 375 66.4
SalBow1G5856 Salvia bowleyana HOM05D003995 ORTHO05D004800 8.5e-134 481.9 375 66.4
Lj4A820G41 Lonicera japonica HOM05D003995 ORTHO05D004800 1.5e-130 471.1 546 53.1
vmacro18871 Vaccinium macrocarpon HOM05D003995 ORTHO05D004800 4.4e-130 469.5 321 75.4
RcHm_v2.0_Chr2g0139601 Rosa chinensis HOM05D003995 ORTHO05D004800 1.7e-118 431.0 389 58.9
Sabra01G0153300 Salix brachista HOM05D003995 ORTHO05D004800 7.3e-109 399.1 393 58.3
Mapoly0022s0096 Marchantia polymorpha HOM05D003995 ORTHO05D004800 2.2e-105 387.5 742 40.4
Pp3c2_17390 Physcomitrium patens HOM05D003995 ORTHO05D004800 8.3e-105 385.6 740 40.1
MBI01_g39826_MAGBIO Magnolia biondii HOM05D003995 ORTHO05D004800 9.2e-104 382.1 633 40.9
Hund00665 Selenicereus undatus HOM05D003995 ORTHO05D004800 6.6e-102 375.9 493 46.9
arahy.Tifrunner.gnm1.ann1.QE1TJP Arachis hypogaea HOM05D003995 ORTHO05D004800 8.3e-97 359.0 392 54.1
SMO340G0180 Selaginella moellendorffii HOM05D003995 ORTHO05D004800 3.0e-94 350.5 717 36.5
AagrBONN_evm.TU.Sc2ySwM_362.567 Anthoceros agrestis HOM05D003995 ORTHO05D004800 8.6e-94 349.0 776 35.8
ClCG07G013220 Citrullus lanatus HOM05D003995 ORTHO05D004800 2.3e-70 271.2 336 50.6
Actinidia39150 Actinidia chinensis HOM05D003995 ORTHO05D004800 7.4e-69 266.2 414 44.0
vmacro18870 Vaccinium macrocarpon HOM05D003995 ORTHO05D004800 4.6e-63 246.9 348 44.5
CBR_g36315 Chara braunii HOM05D003995 ORTHO05D004800 4.1e-59 233.8 591 34.0
Actinidia32709 Actinidia chinensis HOM05D003995 ORTHO05D004800 1.9e-56 224.9 350 41.7
Actinidia32710 Actinidia chinensis HOM05D003995 ORTHO05D004800 9.3e-56 222.6 151 78.1
CBR_g31940 Chara braunii HOM05D003995 ORTHO05D004800 6.3e-52 209.9 866 28.8
Glyma.15G018300 Glycine max HOM05D003995 ORTHO05D004800 1.5e-45 188.7 258 45.7
Actinidia09000 Actinidia chinensis HOM05D003995 ORTHO05D004800 1.7e-44 185.3 167 61.7
CDE02G4060 Ceratophyllum demersum HOM05D003995 ORTHO05D004800 6.5e-41 173.3 152 57.9
CBR_g25753 Chara braunii HOM05D003995 ORTHO05D004800 2.5e-40 171.4 246 43.5
HanXRQChr10g0310971 Helianthus annuus HOM05D003995 ORTHO05D004800 1.5e-37 162.2 164 55.5
Cre12.g545300 Chlamydomonas reinhardtii HOM05D003995 ORTHO05D004800 2.6e-29 134.8 385 28.3
Cre12.g545150 Chlamydomonas reinhardtii HOM05D003995 ORTHO05D004800 2.2e-28 131.7 369 29.3
Lj4C820T9 Lonicera japonica HOM05D003995 ORTHO05D004800 7.0e-27 126.7 69 92.8
FAN18G0014 Fragaria x ananassa HOM05D003995 ORTHO05D004800 2.0e-26 125.2 69 89.9
Actinidia39149 Actinidia chinensis HOM05D003995 ORTHO05D004800 5.0e-25 120.6 152 44.7
Gorai.003G083400 Gossypium raimondii HOM05D003995 ORTHO05D004800 3.0e-22 111.3 116 54.3
Gohir.D03G024850 Gossypium hirsutum HOM05D003995 ORTHO05D004800 6.8e-22 110.2 116 54.3
Actinidia08998 Actinidia chinensis HOM05D003995 ORTHO05D004800 1.3e-20 105.9 57 94.7
SEGI_12342 Sequoiadendron giganteum HOM05D003995 ORTHO05D004800 6.3e-20 103.6 81 59.3
MBI07_g11499_MAGBIO Magnolia biondii HOM05D003995 ORTHO05D004800 1.1e-19 102.8 62 82.3
PRCOL_00002233 Prasinoderma coloniale HOM05D003995 ORTHO05D004800 4.1e-19 100.9 500 27.0
FvH4_5g23151 Fragaria vesca HOM05D003995 ORTHO05D004800 1.0e-17 96.3 51 92.2
FvH4_7g32131 Fragaria vesca HOM05D003995 ORTHO05D004800 1.1e-16 92.8 51 88.2
Zm00001eb248030 Zea mays HOM05D002169 ORTHO05D004800 2.8e-12 78.2 101 47.5
Lsat_1_v5_gn_7_27180 Lactuca sativa HOM05D003995 ORTHO05D004605 4.9e-12 77.4 66 65.2
Pp3c1_18430 Physcomitrium patens HOM05D003995 ORTHO05D004800 5.9e-10 70.5 424 26.4
MBI03_g21265_MAGBIO Magnolia biondii HOM05D003995 ORTHO05D004800 1.1e-08 66.2 59 57.6


User provided reference genes

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