Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.02G122700 Carya illinoinensis HOM05D004187 ORTHO05D004890 3.1e-94 348.6 196 100.0
Cfa008463 Carpinus fangiana HOM05D004187 ORTHO05D004890 3.5e-77 292.0 196 84.7
Haze_11210 Corylus avellana HOM05D004187 ORTHO05D004890 1.5e-75 286.6 196 83.7
Prupe.1G018500 Prunus persica HOM05D004187 ORTHO05D004890 3.5e-69 265.4 195 68.2
QL06p001566 Quercus lobata HOM05D004187 ORTHO05D004890 3.5e-69 265.4 195 70.8
MD16G1197500 Malus domestica HOM05D004187 ORTHO05D004890 1.1e-65 253.8 195 65.1
RcHm_v2.0_Chr4g0407591 Rosa chinensis HOM05D004187 ORTHO05D004890 5.8e-64 248.1 195 63.1
Potri.008G155800 Populus trichocarpa HOM05D004187 ORTHO05D004890 2.2e-63 246.1 197 62.9
Gohir.A10G118400 Gossypium hirsutum HOM05D004187 ORTHO05D004890 6.4e-63 244.6 206 57.8
FvH4_5g32450 Fragaria vesca HOM05D004187 ORTHO05D004890 8.3e-63 244.2 195 63.6
FAN18G3642 Fragaria x ananassa HOM05D004187 ORTHO05D004890 8.3e-63 244.2 195 63.6
FAN13G2545 Fragaria x ananassa HOM05D004187 ORTHO05D004890 4.1e-62 241.9 195 63.1
Gorai.011G165600 Gossypium raimondii HOM05D004187 ORTHO05D004890 4.1e-62 241.9 206 57.3
Gohir.D10G148300 Gossypium hirsutum HOM05D004187 ORTHO05D004890 7.1e-62 241.1 206 57.8
FvH4_4g00760 Fragaria vesca HOM05D004187 ORTHO05D004890 9.2e-62 240.7 195 62.6
FAN12G2319 Fragaria x ananassa HOM05D004187 ORTHO05D004890 9.2e-62 240.7 195 62.6
MELO3C006513.2 Cucumis melo HOM05D004187 ORTHO05D004890 1.2e-61 240.4 200 63.0
Sabra08G0118600 Salix brachista HOM05D004187 ORTHO05D004890 1.2e-61 240.4 197 62.4
CsaV3_3G013040 Cucumis sativus L. HOM05D004187 ORTHO05D004890 2.1e-61 239.6 200 62.0
Nn1g02390 Nelumbo nucifera HOM05D004187 ORTHO05D004890 2.1e-61 239.6 196 61.2
Sed0024336 Sechium edule HOM05D004187 ORTHO05D004890 2.1e-61 239.6 199 61.8
GSVIVG01018017001 Vitis vinifera HOM05D004187 ORTHO05D004890 6.0e-61 238.0 196 60.2
TWI73G1209 Tripterygium wilfordii HOM05D004187 ORTHO05D004890 7.8e-61 237.7 202 57.9
FAN22G0369 Fragaria x ananassa HOM05D004187 ORTHO05D004890 1.0e-60 237.3 195 62.6
Thecc.04G235800 Theobroma cacao HOM05D002650 ORTHO05D002924 1.0e-60 237.3 203 58.1
ClCG05G004990 Citrullus lanatus HOM05D004187 ORTHO05D004890 2.3e-60 236.1 200 62.5
Rhsim04G0199500 Rhododendron simsii HOM05D004187 ORTHO05D004890 6.6e-60 234.6 196 59.7
TAR362G0393 Trochodendron aralioides HOM05D004187 ORTHO05D004890 7.3e-59 231.1 196 61.2
TWI53G1349 Tripterygium wilfordii HOM05D004187 ORTHO05D004890 6.2e-58 228.0 200 56.5
Sed0012407 Sechium edule HOM05D004187 ORTHO05D004890 1.4e-57 226.9 197 59.9
Duzib212G0360 Durio zibethinus HOM05D004187 ORTHO05D004890 2.4e-57 226.1 136 72.8
CANSAT78G1519 Cannabis sativa HOM05D004187 ORTHO05D004890 5.2e-57 224.9 201 57.2
Manes.15G031200 Manihot esculenta HOM05D004187 ORTHO05D004890 8.9e-57 224.2 196 58.2
Actinidia40129 Actinidia chinensis HOM05D004187 ORTHO05D004890 1.5e-56 223.4 195 55.4
Dinv25939 Davidia involucrata HOM05D004187 ORTHO05D004890 7.6e-56 221.1 196 65.8
Ciclev10005993m.g Citrus clementina HOM05D004187 ORTHO05D004890 9.9e-56 220.7 191 56.5
Eucgr.H03428 Eucalyptus grandis HOM05D004187 ORTHO05D004890 9.9e-56 220.7 192 56.2
THA.LOC104803042 Tarenaya hassleriana HOM05D004187 ORTHO05D004890 9.9e-56 220.7 197 57.4
Atru.chr4.2392 Acer truncatum HOM05D004187 ORTHO05D004890 6.4e-55 218.0 224 49.6
Manes.03G175300 Manihot esculenta HOM05D004187 ORTHO05D004890 1.1e-54 217.2 196 56.1
Lalb_Chr05g0211101 Lupinus albus HOM05D004187 ORTHO05D004890 1.9e-54 216.5 126 77.0
Atru.chr4.2417 Acer truncatum HOM05D004187 ORTHO05D004890 4.2e-54 215.3 224 49.6
CSS0045006 Camellia sinensis var. sinensis HOM05D004187 ORTHO05D004890 9.2e-54 214.2 196 63.8
MBI11_g32998_MAGBIO Magnolia biondii HOM05D002650 ORTHO05D002924 3.5e-53 212.2 196 55.1
Glyma.01G235900 Glycine max HOM05D004187 ORTHO05D004890 7.8e-53 211.1 195 54.4
Rhsim02G0027200 Rhododendron simsii HOM05D004187 ORTHO05D004890 5.1e-52 208.4 125 73.6
Medtr5g006610 Medicago truncatula HOM05D004187 ORTHO05D004890 6.6e-52 208.0 196 55.6
Psat2g190440 Pisum sativum HOM05D004187 ORTHO05D004890 1.1e-51 207.2 135 69.6
VMungo0251G0090 Vigna mungo HOM05D004187 ORTHO05D004890 1.5e-51 206.8 122 76.2
arahy.Tifrunner.gnm1.ann1.8FXP11 Arachis hypogaea HOM05D004187 ORTHO05D004890 1.9e-51 206.5 127 72.4
arahy.Tifrunner.gnm1.ann1.Q4QH0F Arachis hypogaea HOM05D004187 ORTHO05D004890 1.9e-51 206.5 127 72.4
arahy.Tifrunner.gnm1.ann1.Q6C7EF Arachis hypogaea HOM05D004187 ORTHO05D004890 1.9e-51 206.5 125 73.6
Ca_24413_v3 Cicer arietinum L. HOM05D004187 ORTHO05D004890 1.9e-51 206.5 122 76.2
Phvul.002G043400 Phaseolus vulgaris HOM05D004187 ORTHO05D004890 1.9e-51 206.5 122 77.0
vmacro15360 Vaccinium macrocarpon HOM05D004187 ORTHO05D004890 1.9e-51 206.5 196 54.1
FAN08G0419 Fragaria x ananassa HOM05D004187 ORTHO05D004890 2.5e-51 206.1 119 79.0
Aqoxy2G03437 Aquilegia oxysepala HOM05D004187 ORTHO05D004890 7.3e-51 204.5 130 72.3
TPR.G37887 Trifolium pratense HOM05D004187 ORTHO05D004890 9.6e-51 204.1 122 74.6
arahy.Tifrunner.gnm1.ann1.LSRC2Y Arachis hypogaea HOM05D004187 ORTHO05D004890 2.8e-50 202.6 127 71.7
Hma1.2p1_0207F.1_g088010 Hydrangea macrophylla HOM05D004187 ORTHO05D004890 2.8e-50 202.6 196 54.6
TPR.G37866 Trifolium pratense HOM05D004187 ORTHO05D004890 3.6e-50 202.2 127 71.7
Medtr5g006600 Medicago truncatula HOM05D004187 ORTHO05D004890 4.7e-50 201.8 127 70.9
AUR62001090 Chenopodium quinoa HOM05D004187 ORTHO05D004890 2.4e-49 199.5 196 52.0
CSS0034976 Camellia sinensis var. sinensis HOM05D004187 ORTHO05D004890 3.1e-49 199.1 197 52.8
LjContig00408g0013113 Lotus japonicus HOM05D004187 ORTHO05D004890 5.3e-49 198.4 127 69.3
BcaC01g03429 Brassica carinata HOM05D004187 ORTHO05D004890 6.9e-49 198.0 181 54.1
BcaC01g03430 Brassica carinata HOM05D004187 ORTHO05D004890 6.9e-49 198.0 181 54.1
C03p52670 Brassica napus HOM05D004187 ORTHO05D004890 6.9e-49 198.0 181 54.1
BolC3t17535H Brassica oleracea HOM05D004187 ORTHO05D004890 6.9e-49 198.0 181 54.1
Carub.0003s2284 Capsella rubella HOM05D004187 ORTHO05D004890 1.5e-48 196.8 179 53.6
Nitab4.5_0000050g0260 Nicotiana tabacum HOM05D004187 ORTHO05D004890 1.5e-48 196.8 195 50.8
Glyma.11G007300 Glycine max HOM05D004187 ORTHO05D004890 3.4e-48 195.7 114 75.4
A03p42920 Brassica napus HOM05D004187 ORTHO05D004890 5.8e-48 194.9 181 53.6
BraA03t13436Z Brassica rapa HOM05D004187 ORTHO05D004890 5.8e-48 194.9 181 53.6
Ca_24412_v3 Cicer arietinum L. HOM05D004187 ORTHO05D004890 7.6e-48 194.5 135 64.4
Ca_30960_v3 Cicer arietinum L. HOM05D004187 ORTHO05D004890 7.6e-48 194.5 135 64.4
COL.COLO4_21526 Corchorus olitorius HOM05D004187 ORTHO05D004890 1.3e-47 193.7 113 75.2
TAR633G0827 Trochodendron aralioides HOM05D004187 ORTHO05D004890 1.7e-47 193.4 121 74.4
Psat2g190480 Pisum sativum HOM05D004187 ORTHO05D004890 2.2e-47 193.0 127 66.9
Lj3A731T58 Lonicera japonica HOM05D004187 ORTHO05D004890 3.8e-47 192.2 195 53.3
AT3G22680 Arabidopsis thaliana HOM05D004187 ORTHO05D004890 4.9e-47 191.8 179 52.0
PGR129G0008 Punica granatum HOM05D004187 ORTHO05D004890 6.4e-47 191.4 195 47.2
PGR142G1722 Punica granatum HOM05D004187 ORTHO05D004890 6.4e-47 191.4 195 47.2
THA.LOC104808564 Tarenaya hassleriana HOM05D004187 ORTHO05D004890 1.1e-46 190.7 127 68.5
AL3G36980 Arabidopsis lyrata HOM05D004187 ORTHO05D004890 1.9e-46 189.9 191 49.2
Cc10_g08560 Coffea canephora HOM05D004187 ORTHO05D004890 1.9e-46 189.9 195 52.3
Thhalv10021679m.g Eutrema salsugineum HOM05D004187 ORTHO05D004890 1.9e-46 189.9 132 62.9
Nitab4.5_0000085g0360 Nicotiana tabacum HOM05D004187 ORTHO05D004890 4.2e-46 188.7 195 50.8
PSO210G5857 Papaver somniferum HOM05D004187 ORTHO05D004890 1.2e-45 187.2 193 49.7
CARHR098560 Cardamine hirsuta HOM05D004187 ORTHO05D004890 1.6e-45 186.8 183 50.8
PSO170G4884 Papaver somniferum HOM05D004187 ORTHO05D004890 2.1e-45 186.4 193 49.7
AUR62008916 Chenopodium quinoa HOM05D004187 ORTHO05D004890 3.5e-45 185.7 195 49.2
MSTRG.4047 Avicennia marina HOM05D004187 ORTHO05D004890 6.0e-45 184.9 191 51.3
Nitab4.5_0001547g0030 Nicotiana tabacum HOM05D004187 ORTHO05D004890 1.0e-44 184.1 195 50.3
BraA05t21487Z Brassica rapa HOM05D004187 ORTHO05D004890 2.3e-44 183.0 184 51.6
Sp3g20440 Schrenkiella parvula HOM05D004187 ORTHO05D004890 2.3e-44 183.0 181 50.8
Aa31LG3G2350 Aethionema arabicum HOM05D004187 ORTHO05D004890 5.1e-44 181.8 136 64.0
A05p26020 Brassica napus HOM05D004187 ORTHO05D004890 6.6e-44 181.4 183 50.3
DCAR_031726 Daucus carota HOM05D004187 ORTHO05D004890 1.5e-43 180.3 128 63.3
BcaB06g26379 Brassica carinata HOM05D004187 ORTHO05D004890 5.6e-43 178.3 181 49.2
Sc19g0004030 Simmondsia chinensis HOM05D004187 ORTHO05D004890 5.6e-43 178.3 192 47.4
PGSC0003DMG401028774 Solanum tuberosum HOM05D004187 ORTHO05D004890 5.6e-43 178.3 195 47.7
Dinv03045 Davidia involucrata HOM05D004187 ORTHO05D004890 7.3e-43 177.9 121 66.1
Nitab4.5_0001792g0010 Nicotiana tabacum HOM05D004187 ORTHO05D004890 7.3e-43 177.9 114 66.7
SalBow2G0844 Salvia bowleyana HOM05D004187 ORTHO05D004890 7.3e-43 177.9 195 51.3
BcaC05g28028 Brassica carinata HOM05D004187 ORTHO05D004890 9.6e-43 177.6 181 49.2
C05p40440 Brassica napus HOM05D004187 ORTHO05D004890 9.6e-43 177.6 181 49.2
BolC5t32785H Brassica oleracea HOM05D004187 ORTHO05D004890 9.6e-43 177.6 181 49.2
Sopen10g014270 Solanum pennellii HOM05D004187 ORTHO05D004890 9.6e-43 177.6 195 47.2
HanXRQChr08g0219391 Helianthus annuus HOM05D004187 ORTHO05D004890 2.1e-42 176.4 131 61.1
ECA247G0434 Erigeron canadensis HOM05D000045 ORTHO05D004890 2.8e-42 176.0 128 61.7
Thhalv10017318m.g Eutrema salsugineum HOM05D004187 ORTHO05D004890 2.8e-42 176.0 121 63.6
ECA233G0410 Erigeron canadensis HOM05D004187 ORTHO05D004890 3.6e-42 175.6 129 62.0
SalBow2G2347 Salvia bowleyana HOM05D004187 ORTHO05D004890 3.6e-42 175.6 195 50.8
ATR0665G390 Amborella trichopoda HOM05D004187 ORTHO05D004890 1.4e-41 173.7 195 49.7
ECA247G1582 Erigeron canadensis HOM05D004187 ORTHO05D004890 1.8e-41 173.3 129 60.5
CDE07G0031 Ceratophyllum demersum HOM05D004187 ORTHO05D004890 9.0e-41 171.0 194 48.5
Lsat_1_v5_gn_8_21341 Lactuca sativa HOM05D004187 ORTHO05D004890 1.5e-40 170.2 130 58.5
SGA_v2.0_scaffold191G40487 Striga asiatica HOM05D004187 ORTHO05D004890 1.5e-40 170.2 127 60.6
CAN.G1402.3 Capsicum annuum HOM05D004187 ORTHO05D004890 2.2e-39 166.4 197 42.6
Migut.G00365 Erythranthe guttata HOM05D004187 ORTHO05D004890 2.2e-39 166.4 132 58.3
Rhsim03G0003800 Rhododendron simsii HOM05D004187 ORTHO05D004890 3.8e-39 165.6 120 61.7
Peaxi162Scf00092g00016 Petunia axillaris HOM05D004187 ORTHO05D004890 1.1e-38 164.1 120 60.0
Solyc09g082480.2 Solanum lycopersicum HOM05D004187 ORTHO05D004890 1.1e-38 164.1 120 58.3
Actinidia32414 Actinidia chinensis HOM05D004187 ORTHO05D004890 1.4e-38 163.7 116 62.9
Solyc10g045190.3 Solanum lycopersicum HOM05D004187 ORTHO05D004890 1.2e-37 160.6 114 63.2
PGSC0003DMG402028774 Solanum tuberosum HOM05D004187 ORTHO05D004890 1.2e-37 160.6 114 62.3
HPP92_009615 Vanilla planifolia HOM05D004187 ORTHO05D004890 1.2e-37 160.6 189 44.4
Thhalv10029384m.g Eutrema salsugineum HOM05D004187 ORTHO05D004890 2.1e-37 159.8 123 57.7
Potri.008G076500 Populus trichocarpa HOM05D004187 ORTHO05D004890 4.6e-37 158.7 131 56.5
Sopen09g031340 Solanum pennellii HOM05D004187 ORTHO05D004890 1.3e-36 157.1 120 56.7
PGSC0003DMG400039476 Solanum tuberosum HOM05D004187 ORTHO05D004890 2.3e-36 156.4 114 58.8
Peaxi162Scf00245g00106 Petunia axillaris HOM05D004187 ORTHO05D004890 1.5e-35 153.7 119 56.3
Cfa001472 Carpinus fangiana HOM05D004187 ORTHO05D004890 5.6e-35 151.8 127 57.5
QL08p059729 Quercus lobata HOM05D004187 ORTHO05D004890 1.6e-34 150.2 120 53.3
AUR62001087 Chenopodium quinoa HOM05D004187 ORTHO05D004890 3.7e-34 149.1 206 42.7
RcHm_v2.0_Chr1g0367131 Rosa chinensis HOM05D004187 ORTHO05D004890 8.1e-34 147.9 126 56.3
Haze_17068 Corylus avellana HOM05D004187 ORTHO05D004890 3.1e-33 146.0 127 55.9
Prupe.2G235500 Prunus persica HOM05D004187 ORTHO05D004890 5.3e-33 145.2 129 51.2
Sopen09g031300 Solanum pennellii HOM05D004187 ORTHO05D004890 6.9e-33 144.8 114 55.3
unitig_22.g6822 Utricularia gibba HOM05D004187 ORTHO05D004890 1.5e-32 143.7 126 51.6
PGSC0003DMG400040737 Solanum tuberosum HOM05D004187 ORTHO05D004890 2.0e-32 143.3 109 56.9
Atru.chr1.2916 Acer truncatum HOM05D004187 ORTHO05D004890 5.5e-30 135.2 116 52.6
COL.COLO4_15044 Corchorus olitorius HOM05D004187 ORTHO05D004890 1.6e-29 133.7 123 48.8
Nn6g35138 Nelumbo nucifera HOM05D004187 ORTHO05D004890 3.5e-29 132.5 110 59.1
PGSC0003DMG400039782 Solanum tuberosum HOM05D004187 ORTHO05D004890 3.5e-29 132.5 103 54.4
Manes.12G002301 Manihot esculenta HOM05D004187 ORTHO05D004890 4.6e-29 132.1 109 59.6
Atru.chr7.913 Acer truncatum HOM05D004187 ORTHO05D004890 1.3e-28 130.6 111 52.3
Sopen09g031290 Solanum pennellii HOM05D004187 ORTHO05D004890 3.0e-28 129.4 95 57.9
Solyc09g082420.1 Solanum lycopersicum HOM05D004187 ORTHO05D004890 2.1e-26 123.2 89 61.8
PGSC0003DMG400032269 Solanum tuberosum HOM05D004187 ORTHO05D004890 3.7e-26 122.5 84 59.5
Lalb_Chr10g0091621 Lupinus albus HOM05D004187 ORTHO05D004890 6.2e-26 121.7 120 48.3
Solyc09g082430.1 Solanum lycopersicum HOM05D004187 ORTHO05D004890 8.2e-26 121.3 96 57.3
Duzib114G0324 Durio zibethinus HOM05D004187 ORTHO05D004890 1.2e-24 117.5 112 49.1
Atru.chr1.2920 Acer truncatum HOM05D004187 ORTHO05D004890 1.7e-23 113.6 125 45.6
VMungo1383G1788 Vigna mungo HOM05D004187 ORTHO05D004890 4.9e-23 112.1 125 42.4
Medtr5g006580 Medicago truncatula HOM05D004187 ORTHO05D004890 1.1e-22 110.9 121 47.9
Ca_12246_v3 Cicer arietinum L. HOM05D004187 ORTHO05D004890 1.9e-22 110.2 107 50.5
Phvul.008G010500 Phaseolus vulgaris HOM05D004187 ORTHO05D004890 4.2e-22 109.0 120 41.7
Lj1g0009372 Lotus japonicus HOM05D004187 ORTHO05D004890 5.5e-22 108.6 121 44.6
Lj1g0019332 Lotus japonicus HOM05D004187 ORTHO05D004890 5.5e-22 108.6 121 44.6
PGSC0003DMG400013771 Solanum tuberosum HOM05D004187 ORTHO05D004890 1.0e-20 104.4 77 54.5
Solyc09g082440.1 Solanum lycopersicum HOM05D004187 ORTHO05D004890 1.8e-20 103.6 73 61.6
Lj1g0011366 Lotus japonicus HOM05D004187 ORTHO05D004890 6.7e-20 101.7 121 42.1
Lalb_Chr16g0376451 Lupinus albus HOM05D004187 ORTHO05D004890 4.3e-19 99.0 53 79.2
PGSC0003DMG400032265 Solanum tuberosum HOM05D004187 ORTHO05D004890 1.6e-18 97.1 68 55.9
Sabra10G0059200 Salix brachista HOM05D004187 ORTHO05D004890 3.4e-16 89.4 121 44.6
Thecc.10G042200 Theobroma cacao HOM05D009017 ORTHO05D010462 4.5e-16 89.0 110 40.0
Gohir.A10G219300 Gossypium hirsutum HOM05D009017 ORTHO05D010462 4.2e-14 82.4 120 37.5
Potri.010G083751 Populus trichocarpa HOM05D004187 ORTHO05D004890 2.2e-10 70.1 42 69.0
Zm00001eb275620 Zea mays HOM05D004187 ORTHO05D004890 3.7e-10 69.3 45 66.7
BcaB03g14654 Brassica carinata HOM05D004187 ORTHO05D004890 4.1e-09 65.9 72 43.1


User provided reference genes

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