Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.02G116300 Carya illinoinensis HOM05D005259 ORTHO05D006402 0.0e+00 2083.9 1061 100.0
CiPaw.01G190300 Carya illinoinensis HOM05D005259 ORTHO05D001287 0.0e+00 1203.3 1045 63.1
Cfa008379 Carpinus fangiana HOM05D005259 ORTHO05D006402 0.0e+00 1155.6 1070 59.6
QL06p015741 Quercus lobata HOM05D005259 ORTHO05D006402 7.4e-299 1030.8 1092 55.2
Thecc.04G246200 Theobroma cacao HOM05D005259 ORTHO05D006402 4.6e-240 835.5 1144 45.2
Atru.chr4.2229 Acer truncatum HOM05D005259 ORTHO05D006402 3.0e-239 832.8 1140 44.2
Ciclev10004215m.g Citrus clementina HOM05D005259 ORTHO05D006402 1.2e-237 827.4 1141 44.5
Duzib151G0402 Durio zibethinus HOM05D005259 ORTHO05D006402 7.9e-224 781.6 1145 43.0
Manes.03G168800 Manihot esculenta HOM05D005259 ORTHO05D006402 8.7e-223 778.1 1106 43.4
Prupe.1G030800 Prunus persica HOM05D005259 ORTHO05D006402 3.5e-216 756.1 1122 43.2
Duzib212G1015 Durio zibethinus HOM05D005259 ORTHO05D006402 1.0e-215 754.6 1146 42.5
Duzib052G0218 Durio zibethinus HOM05D005259 ORTHO05D006402 1.3e-215 754.2 1121 42.4
COL.COLO4_15792 Corchorus olitorius HOM05D005259 ORTHO05D006402 7.6e-211 738.4 1136 40.9
TAR362G0225 Trochodendron aralioides HOM05D005259 ORTHO05D006402 5.5e-209 732.3 1198 40.2
Potri.008G162500 Populus trichocarpa HOM05D005259 ORTHO05D006402 2.7e-208 729.9 1134 40.9
TAR633G1135 Trochodendron aralioides HOM05D005259 ORTHO05D006402 3.0e-207 726.5 1186 40.1
Sabra08G0123900 Salix brachista HOM05D005259 ORTHO05D006402 6.7e-207 725.3 1128 40.2
Potri.010G076700 Populus trichocarpa HOM05D005259 ORTHO05D006402 1.9e-206 723.8 1040 44.4
CSS0027429 Camellia sinensis var. sinensis HOM05D005259 ORTHO05D006402 6.9e-196 688.7 1133 39.8
CSS0043582 Camellia sinensis var. sinensis HOM05D005259 ORTHO05D006402 1.7e-194 684.1 1130 39.8
MD16G1208700 Malus domestica HOM05D005259 ORTHO05D006402 6.7e-191 672.2 1129 39.8
FAN12G0451 Fragaria x ananassa HOM05D005259 ORTHO05D006402 4.4e-190 669.5 1134 39.2
FAN22G1888 Fragaria x ananassa HOM05D005259 ORTHO05D006402 9.7e-190 668.3 1135 39.2
Cpa.g.sc58.48 Carica papaya HOM05D005259 ORTHO05D006402 1.1e-188 664.8 1141 39.4
FvH4_4g02690 Fragaria vesca HOM05D005259 ORTHO05D006402 1.5e-187 661.0 1139 38.9
Manes.15G037000 Manihot esculenta HOM05D005259 ORTHO05D006402 2.6e-187 660.2 1040 41.6
FAN17G1158 Fragaria x ananassa HOM05D005259 ORTHO05D006402 5.2e-183 646.0 1152 38.2
RcHm_v2.0_Chr4g0390511 Rosa chinensis HOM05D005259 ORTHO05D006402 9.7e-182 641.7 1144 38.5
TWI73G0531 Tripterygium wilfordii HOM05D005259 ORTHO05D006402 1.3e-178 631.3 1139 38.6
Glyma.11G008300 Glycine max HOM05D005259 ORTHO05D006402 7.0e-172 609.0 1066 37.4
Hma1.2p1_0650F.1_g195420 Hydrangea macrophylla HOM05D005259 ORTHO05D006402 1.6e-171 607.8 1122 37.6
Glyma.01G234600 Glycine max HOM05D005259 ORTHO05D006402 7.7e-171 605.5 1066 37.1
Actinidia04478 Actinidia chinensis HOM05D005259 ORTHO05D002253 1.2e-168 598.2 1104 38.2
VMungo1215G2763 Vigna mungo HOM05D005259 ORTHO05D006402 1.2e-168 598.2 1062 36.7
Sabra10G0032100 Salix brachista HOM05D005259 ORTHO05D006402 3.6e-168 596.7 1011 40.1
ClCG05G004600 Citrullus lanatus HOM05D005259 ORTHO05D006402 2.3e-167 594.0 1122 36.7
GSVIVG01018119001 Vitis vinifera HOM05D005259 ORTHO05D006402 4.4e-166 589.7 1155 35.5
arahy.Tifrunner.gnm1.ann1.SM0BS0 Arachis hypogaea HOM05D005259 ORTHO05D006402 1.2e-163 581.6 1100 35.5
MD13G1207300 Malus domestica HOM05D005259 ORTHO05D006402 7.7e-163 578.9 1122 37.0
Sed0002321 Sechium edule HOM05D005259 ORTHO05D006402 2.3e-159 567.4 1130 36.3
Potri.008G162150 Populus trichocarpa HOM05D005259 ORTHO05D006402 1.3e-157 561.6 874 40.8
MELO3C006469.2 Cucumis melo HOM05D005259 ORTHO05D006402 4.1e-156 556.6 1119 35.6
Phvul.002G042000 Phaseolus vulgaris HOM05D005259 ORTHO05D006402 5.0e-154 549.7 1051 36.5
LjContig00222g0005017 Lotus japonicus HOM05D005259 ORTHO05D006402 9.5e-153 545.4 1060 34.5
MBI04_g07579_MAGBIO Magnolia biondii HOM05D005259 ORTHO05D006402 9.5e-153 545.4 1146 34.9
CsaV3_3G012580 Cucumis sativus L. HOM05D005259 ORTHO05D006402 4.7e-152 543.1 1104 35.9
Gorai.006G246800 Gossypium raimondii HOM05D005259 ORTHO05D006402 4.7e-152 543.1 1068 37.3
Nn1g02609 Nelumbo nucifera HOM05D005259 ORTHO05D006402 6.1e-152 542.7 1145 34.7
Gohir.A09G223300 Gossypium hirsutum HOM05D005259 ORTHO05D006402 3.7e-149 533.5 1062 36.8
Gohir.D09G225300 Gossypium hirsutum HOM05D005259 ORTHO05D006402 5.4e-148 529.6 1068 36.7
Peaxi162Scf00813g00016 Petunia axillaris HOM05D005259 ORTHO05D006402 4.3e-145 520.0 1065 34.8
Sc13g0005040 Simmondsia chinensis HOM05D005259 ORTHO05D006402 1.2e-144 518.5 1152 33.7
Rhsim04G0190300 Rhododendron simsii HOM05D005259 ORTHO05D006402 1.4e-143 515.0 1101 35.1
Nn3g19539 Nelumbo nucifera HOM05D005259 ORTHO05D006402 5.8e-142 509.6 1137 34.4
vmacro08412 Vaccinium macrocarpon HOM05D005259 ORTHO05D006402 1.1e-140 505.4 1114 34.1
Sed0017180 Sechium edule HOM05D005259 ORTHO05D006402 4.1e-140 503.4 1107 35.1
CAN.G1007.13 Capsicum annuum HOM05D005259 ORTHO05D006402 4.6e-139 500.0 1038 33.9
Lalb_Chr09g0320051 Lupinus albus HOM05D005259 ORTHO05D006402 1.7e-138 498.0 1049 33.8
Eucgr.H03158 Eucalyptus grandis HOM05D005259 ORTHO05D006402 3.6e-136 490.3 822 39.2
Medtr5g007040 Medicago truncatula HOM05D005259 ORTHO05D006402 1.2e-134 485.3 1003 34.7
Haze_11300 Corylus avellana HOM05D005259 ORTHO05D006402 3.7e-133 480.3 423 60.8
Nitab4.5_0004798g0010 Nicotiana tabacum HOM05D005259 ORTHO05D006402 6.4e-133 479.6 1051 33.2
Sopen09g032310 Solanum pennellii HOM05D005259 ORTHO05D006402 4.1e-132 476.9 1033 33.4
Psat2g189680 Pisum sativum HOM05D005259 ORTHO05D006402 6.0e-131 473.0 999 34.7
Dinv29911 Davidia involucrata HOM05D005259 ORTHO05D006402 3.3e-129 467.2 578 47.2
PGSC0003DMG400001126 Solanum tuberosum HOM05D005259 ORTHO05D006402 5.6e-129 466.5 1022 33.3
TPR.G37888 Trifolium pratense HOM05D005259 ORTHO05D006402 1.5e-126 458.4 1045 33.8
Cc03_g04860 Coffea canephora HOM05D005259 ORTHO05D006402 1.6e-123 448.4 1079 32.9
PSO210G6035 Papaver somniferum HOM05D005259 ORTHO05D006402 2.4e-119 434.5 1144 30.6
PSO832G3620 Papaver somniferum HOM05D005259 ORTHO05D006402 2.9e-117 427.6 1140 30.5
Ca_24427_v3 Cicer arietinum L. HOM05D005259 ORTHO05D006402 4.9e-117 426.8 1033 33.6
Oeu049793.2 Olea europaea HOM05D005259 ORTHO05D006402 8.4e-117 426.0 1066 32.1
MSTRG.9924 Avicennia marina HOM05D005259 ORTHO05D006402 6.2e-112 409.8 1063 32.3
Nitab4.5_0000525g0240 Nicotiana tabacum HOM05D005259 ORTHO05D006402 1.1e-111 409.1 1010 30.5
Actinidia40086 Actinidia chinensis HOM05D005259 ORTHO05D006402 5.3e-111 406.8 1082 31.1
Oeu003588.2 Olea europaea HOM05D005259 ORTHO05D006402 6.9e-111 406.4 927 33.1
Aqoxy5G00317 Aquilegia oxysepala HOM05D005259 ORTHO05D006402 6.4e-109 399.8 1151 31.1
DCAR_002351 Daucus carota HOM05D005259 ORTHO05D006402 3.2e-100 370.9 1023 30.8
MSTRG.24702 Avicennia marina HOM05D005259 ORTHO05D006402 5.5e-100 370.2 1047 31.1
Aa31LG5G3600 Aethionema arabicum HOM05D005259 ORTHO05D006402 2.5e-97 361.3 1027 30.9
Thhalv10003150m.g Eutrema salsugineum HOM05D005259 ORTHO05D006402 3.8e-93 347.4 1010 30.7
Sp2g08420 Schrenkiella parvula HOM05D005259 ORTHO05D006402 6.5e-93 346.7 1023 31.4
AT5G43630 Arabidopsis thaliana HOM05D005259 ORTHO05D006402 1.3e-88 332.4 1025 30.8
Dinv44635 Davidia involucrata HOM05D005259 ORTHO05D006402 1.3e-85 322.4 739 34.8
BcaC06g31686 Brassica carinata HOM05D005259 ORTHO05D006402 9.4e-84 316.2 1013 29.4
Carub.0008s0502 Capsella rubella HOM05D005259 ORTHO05D006402 1.7e-80 305.4 800 31.6
Glyma.10G185100 Glycine max HOM05D005259 ORTHO05D006402 5.9e-78 297.0 816 31.6
A06p47780 Brassica napus HOM05D005259 ORTHO05D006402 9.4e-76 289.7 998 28.4
BraA06t27646Z Brassica rapa HOM05D005259 ORTHO05D006402 1.8e-74 285.4 998 28.5
BolC7t43150H Brassica oleracea HOM05D005259 ORTHO05D006402 9.7e-73 279.6 748 31.7
BcaC06g34639 Brassica carinata HOM05D005259 ORTHO05D006402 2.2e-72 278.5 748 31.7
C07p26220 Brassica napus HOM05D005259 ORTHO05D006402 2.2e-72 278.5 748 31.7
ATR0665G554 Amborella trichopoda HOM05D005259 ORTHO05D006402 7.0e-71 273.5 1075 26.3
CDE07G1991 Ceratophyllum demersum HOM05D000989 ORTHO05D006402 2.2e-69 268.5 747 30.9
BcaB07g30565 Brassica carinata HOM05D005259 ORTHO05D006402 8.0e-67 260.0 709 29.9
Medtr6g046940 Medicago truncatula HOM05D005259 ORTHO05D006402 2.3e-66 258.5 904 27.5
VMungo0720G1316 Vigna mungo HOM05D005259 ORTHO05D006402 8.8e-66 256.5 737 30.4
Lalb_Chr02g0150411 Lupinus albus HOM05D005259 ORTHO05D006402 2.8e-64 251.5 706 32.2
Lalb_Chr06g0169311 Lupinus albus HOM05D005259 ORTHO05D006402 1.0e-61 243.0 700 31.6
Nitab4.5_0004798g0040 Nicotiana tabacum HOM05D005259 ORTHO05D006402 1.5e-57 229.2 540 31.9
Actinidia08443 Actinidia chinensis HOM05D005259 ORTHO05D006402 1.7e-56 225.7 326 41.4
Solyc09g083390.3 Solanum lycopersicum HOM05D005259 ORTHO05D006402 6.3e-56 223.8 628 29.5
Actinidia08442 Actinidia chinensis HOM05D005259 ORTHO05D006402 1.6e-54 219.2 463 35.9
Phvul.007G125900 Phaseolus vulgaris HOM05D005259 ORTHO05D006402 1.7e-53 215.7 736 29.8
Lj5g0013708 Lotus japonicus HOM05D005259 ORTHO05D006402 4.0e-50 204.5 738 28.2
Dinv44634 Davidia involucrata HOM05D005259 ORTHO05D006402 9.8e-49 199.9 186 56.5
Migut.G00437 Erythranthe guttata HOM05D005259 ORTHO05D006402 9.8e-49 199.9 966 25.9
CARHR006260 Cardamine hirsuta HOM05D005259 ORTHO05D006402 8.3e-48 196.8 339 36.9
Ca_09836_v3 Cicer arietinum L. HOM05D005259 ORTHO05D006402 1.8e-47 195.7 698 28.2
Nitab4.5_0000525g0230 Nicotiana tabacum HOM05D005259 ORTHO05D006402 1.3e-45 189.5 518 30.1
Actinidia05464 Actinidia chinensis HOM05D005259 ORTHO05D006402 2.5e-44 185.3 584 28.8
Dinv29910 Davidia involucrata HOM05D005259 ORTHO05D006402 5.5e-44 184.1 582 29.7
Migut.N00239 Erythranthe guttata HOM05D005259 ORTHO05D006402 2.6e-41 175.3 1014 24.9
Os01g0775100 Oryza sativa ssp. japonica HOM05D005259 ORTHO05D006402 3.4e-41 174.9 735 26.4
THA.LOC104815985 Tarenaya hassleriana HOM05D000856 ORTHO05D001792 7.5e-41 173.7 295 33.9
SGA_v2.0_scaffold88G27281 Striga asiatica HOM05D005259 ORTHO05D006402 7.0e-39 167.2 321 32.7
Lsat_1_v5_gn_5_72841 Lactuca sativa HOM05D005259 ORTHO05D006402 2.8e-35 155.2 164 47.0
Nitab4.5_0000036g0130 Nicotiana tabacum HOM05D005259 ORTHO05D006402 4.7e-35 154.5 170 51.2
Lsat_1_v5_gn_3_123200 Lactuca sativa HOM05D005259 ORTHO05D006402 3.1e-34 151.8 145 53.1
Lj6A656T71 Lonicera japonica HOM05D005259 ORTHO05D006402 5.2e-34 151.0 220 40.9
ECA233G4142 Erigeron canadensis HOM05D005259 ORTHO05D006402 8.9e-34 150.2 175 46.3
HanXRQChr15g0468851 Helianthus annuus HOM05D005259 ORTHO05D006402 2.0e-33 149.1 161 47.8
ECA240G1753 Erigeron canadensis HOM05D005259 ORTHO05D006402 1.7e-32 146.0 182 43.4
Medtr1g075280 Medicago truncatula HOM05D005259 ORTHO05D006402 4.9e-32 144.4 476 29.6
HanXRQChr13g0424471 Helianthus annuus HOM05D005259 ORTHO05D006402 9.2e-31 140.2 146 49.3
HanXRQChr03g0092361 Helianthus annuus HOM05D005259 ORTHO05D006402 3.9e-29 134.8 150 48.7
RcHm_v2.0_Chr7g0198831 Rosa chinensis HOM05D005259 ORTHO05D006402 3.9e-29 134.8 150 46.0
Zm00001eb151720 Zea mays HOM05D005259 ORTHO05D006402 2.1e-27 129.0 1021 23.9
HPP92_018440 Vanilla planifolia HOM05D005259 ORTHO05D006402 1.1e-26 126.7 506 24.7
Cc00_g33140 Coffea canephora HOM05D005259 ORTHO05D006402 2.3e-26 125.6 121 53.7
arahy.Tifrunner.gnm1.ann1.7CP98C Arachis hypogaea HOM05D005259 ORTHO05D006402 7.5e-25 120.6 316 30.1
arahy.Tifrunner.gnm1.ann1.TEF2FC Arachis hypogaea HOM05D005259 ORTHO05D006402 9.8e-25 120.2 707 23.2
arahy.Tifrunner.gnm1.ann1.YIX0R7 Arachis hypogaea HOM05D005259 ORTHO05D006402 2.9e-24 118.6 698 22.8
Psat4g092760 Pisum sativum HOM05D005259 ORTHO05D006402 3.2e-23 115.2 442 28.1
SalBow3G4073 Salvia bowleyana HOM05D005259 ORTHO05D006402 9.2e-23 113.6 128 46.1
MBI04_g45851_MAGBIO Magnolia biondii HOM05D005259 ORTHO05D006402 1.7e-21 109.4 393 27.5
TPR.G27199 Trifolium pratense HOM05D005259 ORTHO05D006402 1.7e-21 109.4 421 27.6
SMO205G0008 Selaginella moellendorffii HOM05D007564 ORTHO05D009975 7.3e-20 104.0 311 26.0
SMO111G0058 Selaginella moellendorffii HOM05D007564 ORTHO05D013712 1.2e-19 103.2 314 26.4
SMO276G0057 Selaginella moellendorffii HOM05D007564 ORTHO05D009975 4.0e-18 98.2 330 24.8
TPR.G17184 Trifolium pratense HOM05D005259 ORTHO05D006402 8.3e-16 90.5 87 50.6
Cc00_g10240 Coffea canephora HOM05D005259 ORTHO05D006402 2.5e-12 79.0 80 47.5
THA.LOC104815984 Tarenaya hassleriana HOM05D005259 ORTHO05D006402 1.1e-10 73.6 225 29.8
Lj6A656T72 Lonicera japonica HOM05D005259 ORTHO05D006402 5.4e-07 61.2 155 29.7


User provided reference genes

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