Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.02G067900 Carya illinoinensis HOM05D003979 ORTHO05D005530 0.0e+00 1227.6 614 100.0
Cfa014896 Carpinus fangiana HOM05D003979 ORTHO05D005530 0.0e+00 1121.7 619 91.1
CiPaw.01G125500 Carya illinoinensis HOM05D003979 ORTHO05D005530 0.0e+00 1112.8 619 91.3
Haze_11573 Corylus avellana HOM05D003979 ORTHO05D005530 0.0e+00 1099.7 654 85.6
Prupe.1G003100 Prunus persica HOM05D003979 ORTHO05D005530 1.7e-311 1072.0 621 87.3
MD04G1003600 Malus domestica HOM05D003979 ORTHO05D005530 2.3e-308 1061.6 626 85.3
QL07p012465 Quercus lobata HOM05D003979 ORTHO05D005530 3.4e-304 1047.7 618 84.6
Dinv38268 Davidia involucrata HOM05D003979 ORTHO05D005530 1.3e-303 1045.8 622 84.4
ClCG05G003530 Citrullus lanatus HOM05D003979 ORTHO05D005530 4.9e-303 1043.9 623 83.9
CsaV3_3G011200 Cucumis sativus L. HOM05D003979 ORTHO05D005530 9.3e-302 1039.6 622 83.4
Sed0009934 Sechium edule HOM05D003979 ORTHO05D005530 2.7e-301 1038.1 622 84.1
CANSAT78G1204 Cannabis sativa HOM05D003979 ORTHO05D005530 3.5e-301 1037.7 614 84.7
MELO3C006331.2 Cucumis melo HOM05D003979 ORTHO05D005530 6.0e-301 1036.9 623 83.3
PGSC0003DMG400019163 Solanum tuberosum HOM05D003979 ORTHO05D005530 1.9e-299 1031.9 581 86.6
TAR365G0531 Trochodendron aralioides HOM05D003979 ORTHO05D005530 9.6e-299 1029.6 627 82.5
CSS0040719 Camellia sinensis var. sinensis HOM05D003979 ORTHO05D005530 2.1e-298 1028.5 622 82.5
CSS0027237 Camellia sinensis var. sinensis HOM05D003979 ORTHO05D005530 2.8e-298 1028.1 622 82.5
Actinidia34623 Actinidia chinensis HOM05D003979 ORTHO05D005530 6.2e-298 1026.9 625 83.4
arahy.Tifrunner.gnm1.ann1.ZGF32Z Arachis hypogaea HOM05D003979 ORTHO05D005530 6.2e-298 1026.9 618 83.7
Sopen05g032060 Solanum pennellii HOM05D003979 ORTHO05D005530 8.1e-298 1026.5 581 85.9
Ciclev10004565m.g Citrus clementina HOM05D003979 ORTHO05D005530 1.1e-297 1026.2 621 83.4
Solyc05g053540.3 Solanum lycopersicum HOM05D003979 ORTHO05D005530 1.1e-297 1026.2 620 82.1
Solyc12g043020.2 Solanum lycopersicum HOM05D003979 ORTHO05D005530 2.4e-297 1025.0 623 82.3
Thecc.04G210300 Theobroma cacao HOM05D003979 ORTHO05D005530 4.0e-297 1024.2 617 83.1
Hma1.2p1_0691F.1_g204250 Hydrangea macrophylla HOM05D003979 ORTHO05D005530 9.0e-297 1023.1 624 82.1
Sopen12g022260 Solanum pennellii HOM05D003979 ORTHO05D005530 9.0e-297 1023.1 625 81.6
Actinidia35951 Actinidia chinensis HOM05D003979 ORTHO05D005530 1.2e-296 1022.7 588 86.2
Ca_00636_v3 Cicer arietinum L. HOM05D003979 ORTHO05D005530 2.0e-296 1021.9 614 82.6
Ca_29705_v3 Cicer arietinum L. HOM05D003979 ORTHO05D005530 2.0e-296 1021.9 614 82.6
Medtr2g089340 Medicago truncatula HOM05D003979 ORTHO05D005530 2.0e-296 1021.9 614 83.1
Phvul.006G152700 Phaseolus vulgaris HOM05D003979 ORTHO05D005530 2.6e-296 1021.5 615 82.6
Duzib212G0229 Durio zibethinus HOM05D003979 ORTHO05D005530 3.4e-296 1021.1 587 86.0
RcHm_v2.0_Chr1g0328531 Rosa chinensis HOM05D003979 ORTHO05D005530 4.5e-296 1020.8 617 82.8
AUR62020350 Chenopodium quinoa HOM05D003979 ORTHO05D005530 7.6e-296 1020.0 619 82.1
HanXRQChr14g0435331 Helianthus annuus HOM05D003979 ORTHO05D005530 7.6e-296 1020.0 622 81.5
Glyma.13G207900 Glycine max HOM05D003979 ORTHO05D005530 9.9e-296 1019.6 615 82.3
Potri.003G176600 Populus trichocarpa HOM05D003979 ORTHO05D005530 9.9e-296 1019.6 616 84.1
MSTRG.24631 Avicennia marina HOM05D003979 ORTHO05D005530 1.3e-295 1019.2 614 82.1
VMungo0540G1831 Vigna mungo HOM05D003979 ORTHO05D005530 1.3e-295 1019.2 614 82.7
Hund24848 Selenicereus undatus HOM05D003979 ORTHO05D005530 3.8e-295 1017.7 577 85.1
Cc03_g07310 Coffea canephora HOM05D003979 ORTHO05D005530 6.4e-295 1016.9 622 81.0
CARHR100330 Cardamine hirsuta HOM05D003979 ORTHO05D005530 1.1e-294 1016.1 615 83.6
Cc02_g25590 Coffea canephora HOM05D003979 ORTHO05D005530 1.4e-294 1015.8 588 84.0
FAN10G0585 Fragaria x ananassa HOM05D003979 ORTHO05D005530 4.2e-294 1014.2 598 83.3
PGR031G0232 Punica granatum HOM05D003979 ORTHO05D005530 4.2e-294 1014.2 607 83.7
Psat1g182280 Pisum sativum HOM05D003979 ORTHO05D005530 5.4e-294 1013.8 614 81.9
AT3G23940 Arabidopsis thaliana HOM05D003979 ORTHO05D005530 7.1e-294 1013.4 618 83.0
Carub.0003s2458 Capsella rubella HOM05D003979 ORTHO05D005530 7.1e-294 1013.4 618 82.5
FAN06G4745 Fragaria x ananassa HOM05D003979 ORTHO05D005530 1.2e-293 1012.7 568 86.8
Lj6g0025731 Lotus japonicus HOM05D003979 ORTHO05D005530 1.2e-293 1012.7 575 85.6
Nn1g03146 Nelumbo nucifera HOM05D003979 ORTHO05D005530 1.2e-293 1012.7 628 81.4
FAN01G2046 Fragaria x ananassa HOM05D003979 ORTHO05D005530 1.6e-293 1012.3 595 83.9
Lalb_Chr18g0056121 Lupinus albus HOM05D003979 ORTHO05D005530 2.1e-293 1011.9 619 81.7
Potri.001G051700 Populus trichocarpa HOM05D003979 ORTHO05D005530 2.1e-293 1011.9 619 82.1
AUR62015873 Chenopodium quinoa HOM05D003979 ORTHO05D005530 3.5e-293 1011.1 622 81.2
FvH4_7g04190 Fragaria vesca HOM05D003979 ORTHO05D005530 3.5e-293 1011.1 587 84.7
Sc25g0005860 Simmondsia chinensis HOM05D003979 ORTHO05D005530 4.6e-293 1010.7 575 85.6
Migut.N00344 Erythranthe guttata HOM05D003979 ORTHO05D005530 1.0e-292 1009.6 619 80.6
Duzib151G0303 Durio zibethinus HOM05D003979 ORTHO05D005530 1.3e-292 1009.2 581 85.0
Gohir.D02G031700 Gossypium hirsutum HOM05D003979 ORTHO05D005530 2.3e-292 1008.4 614 81.9
AL3G39610 Arabidopsis lyrata HOM05D003979 ORTHO05D005530 3.0e-292 1008.1 614 82.7
DCAR_031519 Daucus carota HOM05D003979 ORTHO05D005530 3.9e-292 1007.7 638 80.1
CAN.G765.2 Capsicum annuum HOM05D003979 ORTHO05D005530 5.1e-292 1007.3 626 80.7
Gorai.005G035200 Gossypium raimondii HOM05D003979 ORTHO05D005530 5.1e-292 1007.3 581 85.0
HanXRQChr02g0059571 Helianthus annuus HOM05D003979 ORTHO05D005530 8.7e-292 1006.5 559 86.6
Manes.15G050825 Manihot esculenta HOM05D003979 ORTHO05D005530 8.7e-292 1006.5 617 82.3
THA.LOC104804817 Tarenaya hassleriana HOM05D003979 ORTHO05D005530 1.1e-291 1006.1 618 81.9
COL.COLO4_20310 Corchorus olitorius HOM05D003979 ORTHO05D005530 5.6e-291 1003.8 614 81.9
Gohir.A02G024400 Gossypium hirsutum HOM05D003979 ORTHO05D005530 7.4e-291 1003.4 578 85.3
Lsat_1_v5_gn_6_63381 Lactuca sativa HOM05D003979 ORTHO05D005530 1.3e-290 1002.7 620 80.3
BcaB04g20393 Brassica carinata HOM05D003979 ORTHO05D005530 1.6e-290 1002.3 618 81.7
Thhalv10002451m.g Eutrema salsugineum HOM05D003979 ORTHO05D005530 2.1e-290 1001.9 614 82.1
Sabra01G0036200 Salix brachista HOM05D003979 ORTHO05D005530 2.1e-290 1001.9 622 81.7
Peaxi162Scf00073g02029 Petunia axillaris HOM05D003979 ORTHO05D005530 2.8e-290 1001.5 577 85.1
C01p39410 Brassica napus HOM05D003979 ORTHO05D005530 4.8e-290 1000.7 614 81.9
BolC1t03890H Brassica oleracea HOM05D003979 ORTHO05D005530 4.8e-290 1000.7 614 81.9
A07p08130 Brassica napus HOM05D003979 ORTHO05D005530 1.1e-289 999.6 620 81.9
BraA07t28596Z Brassica rapa HOM05D003979 ORTHO05D005530 1.1e-289 999.6 620 81.9
Sp3g22010 Schrenkiella parvula HOM05D003979 ORTHO05D005530 1.8e-289 998.8 618 82.0
Aa31LG8G10930 Aethionema arabicum HOM05D003979 ORTHO05D005530 4.0e-289 997.7 622 81.4
THA.LOC104808724 Tarenaya hassleriana HOM05D003979 ORTHO05D005530 6.9e-289 996.9 609 81.4
BcaC06g35668 Brassica carinata HOM05D003979 ORTHO05D005530 1.5e-288 995.7 619 81.6
Ah.04g166150 Amaranthus hybridus HOM05D003979 ORTHO05D005530 2.0e-288 995.3 612 81.2
C07p12270 Brassica napus HOM05D003979 ORTHO05D005530 2.0e-288 995.3 615 82.0
Duzib268G0146 Durio zibethinus HOM05D003979 ORTHO05D005530 2.0e-288 995.3 581 84.3
TAR624G0299 Trochodendron aralioides HOM05D003979 ORTHO05D005530 2.0e-288 995.3 605 82.6
BcaB06g26604 Brassica carinata HOM05D003979 ORTHO05D005530 2.6e-288 995.0 618 81.7
BraA01t03222Z Brassica rapa HOM05D003979 ORTHO05D005530 2.6e-288 995.0 614 81.6
Cpa.g.sc59.101 Carica papaya HOM05D003979 ORTHO05D005530 4.5e-288 994.2 599 82.8
PSO063G3024 Papaver somniferum HOM05D003979 ORTHO05D005530 9.9e-288 993.0 590 82.7
PSO017G0981 Papaver somniferum HOM05D003979 ORTHO05D005530 2.9e-287 991.5 618 79.6
A01p30940 Brassica napus HOM05D003979 ORTHO05D005530 3.2e-286 988.0 615 81.3
ECA233G3228 Erigeron canadensis HOM05D003979 ORTHO05D005530 7.1e-286 986.9 614 80.3
BolC7t41694H Brassica oleracea HOM05D003979 ORTHO05D005530 9.3e-286 986.5 629 80.1
ATR0787G169 Amborella trichopoda HOM05D003979 ORTHO05D005530 1.2e-285 986.1 604 82.0
Zm00001eb039310 Zea mays HOM05D003979 ORTHO05D005530 1.6e-285 985.7 558 85.3
EL10Ac4g07703 Beta vulgaris HOM05D003979 ORTHO05D005530 2.1e-285 985.3 619 79.0
Zm00001eb175970 Zea mays HOM05D003979 ORTHO05D005530 3.5e-285 984.6 577 83.2
arahy.Tifrunner.gnm1.ann1.NX1XST Arachis hypogaea HOM05D003979 ORTHO05D005530 6.0e-285 983.8 624 80.4
Os08g0559600 Oryza sativa ssp. japonica HOM05D003979 ORTHO05D005530 1.5e-283 979.2 589 81.8
MBI07_g21060_MAGBIO Magnolia biondii HOM05D003979 ORTHO05D005530 1.9e-283 978.8 660 75.8
Aqoxy2G03779 Aquilegia oxysepala HOM05D003979 ORTHO05D005530 7.4e-283 976.9 579 83.8
Aqoxy5G02610 Aquilegia oxysepala HOM05D003979 ORTHO05D005530 5.3e-281 970.7 579 83.4
RhsimUnG0135800 Rhododendron simsii HOM05D003979 ORTHO05D005530 5.3e-281 970.7 647 76.2
Oeu022336.1 Olea europaea HOM05D003979 ORTHO05D005530 2.2e-279 965.3 631 77.7
GSVIVG01029073001 Vitis vinifera HOM05D003979 ORTHO05D005530 2.2e-279 965.3 525 89.3
AUR62017196 Chenopodium quinoa HOM05D003979 ORTHO05D005530 1.4e-278 962.6 640 75.5
Nitab4.5_0001769g0010 Nicotiana tabacum HOM05D003979 ORTHO05D005530 3.2e-278 961.4 568 83.3
RhsimUnG0180900 Rhododendron simsii HOM05D003979 ORTHO05D005530 1.3e-274 949.5 691 71.3
Pp3c11_18700 Physcomitrium patens HOM05D003979 ORTHO05D005530 4.8e-274 947.6 588 78.2
Hund11465 Selenicereus undatus HOM05D003979 ORTHO05D005530 9.0e-273 943.3 564 81.0
Peaxi162Scf00536g00915 Petunia axillaris HOM05D003979 ORTHO05D005530 2.3e-268 928.7 576 81.1
SMO361G0245 Selaginella moellendorffii HOM05D003979 ORTHO05D005530 1.9e-267 925.6 609 75.4
Mapoly0044s0128 Marchantia polymorpha HOM05D003979 ORTHO05D005530 7.4e-267 923.7 582 77.1
AUR62010687 Chenopodium quinoa HOM05D003979 ORTHO05D005530 5.3e-265 917.5 558 79.7
Gohir.D10G144500 Gossypium hirsutum HOM05D003979 ORTHO05D005530 5.3e-265 917.5 535 84.7
CBR_g16971 Chara braunii HOM05D003979 ORTHO05D005530 3.0e-260 901.7 599 73.5
Nitab4.5_0001066g0080 Nicotiana tabacum HOM05D003979 ORTHO05D005530 3.3e-259 898.3 577 78.5
SGA_v2.0_scaffold31G12595 Striga asiatica HOM05D003979 ORTHO05D005530 7.0e-257 890.6 537 81.2
HPP92_025762 Vanilla planifolia HOM05D003979 ORTHO05D005530 1.9e-254 882.5 525 81.1
Lj6C614G9 Lonicera japonica HOM05D003979 ORTHO05D005530 1.2e-253 879.8 624 73.4
TWI09G0393 Tripterygium wilfordii HOM05D003979 ORTHO05D005530 3.5e-248 861.7 624 71.0
Gorai.011G161400 Gossypium raimondii HOM05D003979 ORTHO05D005530 9.7e-243 843.6 591 73.4
Cre03.g206600 Chlamydomonas reinhardtii HOM05D003979 ORTHO05D005530 2.5e-238 828.9 616 67.4
MCO11G076 Micromonas commoda HOM05D003979 ORTHO05D005530 1.3e-234 816.6 564 70.0
QL06p023475 Quercus lobata HOM05D003979 ORTHO05D005530 1.8e-233 812.8 488 83.8
unitig_899.g15534 Utricularia gibba HOM05D003979 ORTHO05D005530 8.3e-226 787.3 490 80.4
SMO361G0819 Selaginella moellendorffii HOM05D003979 ORTHO05D005530 5.4e-225 784.6 490 78.8
AagrBONN_evm.TU.Sc2ySwM_228.3337 Anthoceros agrestis HOM05D003979 ORTHO05D005530 1.0e-223 780.4 510 77.3
CDE04G1626 Ceratophyllum demersum HOM05D003979 ORTHO05D005530 7.3e-222 774.2 433 87.3
PRCOL_00005867 Prasinoderma coloniale HOM05D003979 ORTHO05D005530 5.2e-220 768.1 550 67.5
Gohir.A10G121600 Gossypium hirsutum HOM05D003979 ORTHO05D005530 3.5e-216 755.4 426 86.4
HPP92_025735 Vanilla planifolia HOM05D003979 ORTHO05D005530 1.4e-212 743.4 490 76.5
SEGI_04002 Sequoiadendron giganteum HOM05D003979 ORTHO05D005530 1.1e-209 733.8 433 81.1
HPP92_025731 Vanilla planifolia HOM05D003979 ORTHO05D005530 8.1e-205 717.6 422 82.2
Cfa024863 Carpinus fangiana HOM05D003979 ORTHO05D005530 1.7e-202 709.9 561 62.0
vmacro00507 Vaccinium macrocarpon HOM05D003979 ORTHO05D005530 5.4e-193 678.3 403 82.9
Atru.chr4.1774 Acer truncatum HOM05D003979 ORTHO05D005530 3.0e-175 619.4 433 74.1
Cfa023757 Carpinus fangiana HOM05D003979 ORTHO05D005530 1.8e-167 593.6 573 52.9
Eucgr.H02826 Eucalyptus grandis HOM05D003979 ORTHO05D005530 2.2e-162 576.6 312 91.7
QL07p030448 Quercus lobata HOM05D003979 ORTHO05D000106 6.3e-157 558.5 384 76.0
Eucgr.C02488 Eucalyptus grandis HOM05D003979 ORTHO05D005530 6.5e-130 468.8 340 74.1
HanXRQChr14g0435341 Helianthus annuus HOM05D003979 ORTHO05D005530 2.0e-118 430.6 292 74.0
Manes.03G150102 Manihot esculenta HOM05D003979 ORTHO05D005530 4.5e-107 392.9 277 70.0
TPR.G30672 Trifolium pratense HOM05D003979 ORTHO05D005530 1.5e-97 361.3 216 81.0
CAN.G12.22 Capsicum annuum HOM05D003979 ORTHO05D005530 1.1e-76 292.0 207 74.4
Cfa023448 Carpinus fangiana HOM05D003979 ORTHO05D123299 4.6e-75 286.6 559 33.5
vmacro00506 Vaccinium macrocarpon HOM05D003979 ORTHO05D005530 6.0e-75 286.2 205 72.7
Eucgr.H02825 Eucalyptus grandis HOM05D003979 ORTHO05D015566 1.3e-69 268.5 150 86.7
Cfa020039 Carpinus fangiana HOM05D003979 ORTHO05D015566 2.8e-64 250.8 131 92.4
Duzib268G0265 Durio zibethinus HOM05D003979 ORTHO05D015566 3.5e-59 233.8 133 82.0
QL07p012436 Quercus lobata HOM05D003979 ORTHO05D005530 7.4e-57 226.1 126 84.9
THA.LOC104809102 Tarenaya hassleriana HOM05D003979 ORTHO05D049433 5.8e-54 216.5 117 92.3
QL06p023466 Quercus lobata HOM05D003979 ORTHO05D015566 1.7e-53 214.9 114 89.5
PGSC0003DMG400028636 Solanum tuberosum HOM05D003979 ORTHO05D015566 4.2e-52 210.3 115 86.1
Oeu022341.1 Olea europaea HOM05D003979 ORTHO05D049433 2.7e-51 207.6 184 62.5
Lsat_1_v5_gn_4_162440 Lactuca sativa HOM05D003979 ORTHO05D015566 2.5e-49 201.1 109 89.0
Gohir.D02G124900 Gossypium hirsutum HOM05D003979 ORTHO05D005530 1.3e-45 188.7 105 83.8
Eucgr.C02482 Eucalyptus grandis HOM05D003979 ORTHO05D015566 2.9e-45 187.6 115 79.1
Gorai.005G140500 Gossypium raimondii HOM05D003979 ORTHO05D005530 1.4e-44 185.3 133 69.9
Oeu006718.2 Olea europaea HOM05D003979 ORTHO05D005530 2.5e-41 174.5 107 83.2
CDE04G0146 Ceratophyllum demersum HOM05D003979 ORTHO05D005530 7.7e-38 162.9 120 68.3
TPR.G30661 Trifolium pratense HOM05D003979 ORTHO05D005530 2.9e-37 161.0 221 47.5
TWI36G0080 Tripterygium wilfordii HOM05D003979 ORTHO05D005530 7.2e-36 156.4 116 72.4
CAN.G12.20 Capsicum annuum HOM05D003979 ORTHO05D015566 2.3e-26 124.8 70 80.0
Lsat_1_v5_gn_5_133441 Lactuca sativa HOM05D003979 ORTHO05D015566 1.1e-25 122.5 116 59.5
CAN.G12.21 Capsicum annuum HOM05D003979 ORTHO05D015566 1.5e-25 122.1 61 95.1
SMO361G0618 Selaginella moellendorffii HOM05D003979 ORTHO05D015566 3.7e-24 117.5 212 36.8
TPR.G35859 Trifolium pratense HOM05D003979 ORTHO05D015566 3.8e-21 107.5 56 92.9
Aqoxy226s001 Aquilegia oxysepala HOM05D004107 ORTHO05D004738 6.3e-16 90.1 182 30.8
TAR362G1054 Trochodendron aralioides HOM05D000447 ORTHO05D000315 7.0e-15 86.7 67 61.2
HPP92_025734 Vanilla planifolia HOM05D003979 ORTHO05D005530 3.5e-14 84.3 98 50.0
unitig_899.g15535 Utricularia gibba HOM05D003979 ORTHO05D005530 1.2e-09 69.3 96 50.0


User provided reference genes

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