Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.02G029400 Carya illinoinensis HOM05D005745 ORTHO05D006857 1.4e-248 862.4 418 100.0
CiPaw.02G029100 Carya illinoinensis HOM05D005745 ORTHO05D006857 8.5e-214 746.9 417 89.4
QL08p049437 Quercus lobata HOM05D005745 ORTHO05D006857 1.4e-184 649.8 416 78.6
CiPaw.02G029200 Carya illinoinensis HOM05D005745 ORTHO05D006857 1.6e-183 646.4 355 90.4
Cfa003949 Carpinus fangiana HOM05D000683 ORTHO05D000507 5.9e-167 591.3 387 76.5
Haze_15472 Corylus avellana HOM05D005745 ORTHO05D006857 1.0e-163 580.5 414 71.7
MD01G1055100 Malus domestica HOM05D005745 ORTHO05D006857 8.3e-153 544.3 414 68.8
GSVIVG01026870001 Vitis vinifera HOM05D005745 ORTHO05D006857 2.5e-149 532.7 435 63.7
Hma1.2p1_0001F.1_g001520 Hydrangea macrophylla HOM05D005745 ORTHO05D006857 1.2e-146 523.9 413 64.2
Actinidia20926 Actinidia chinensis HOM05D005745 ORTHO05D006857 3.4e-146 522.3 417 63.5
TAR367G0002 Trochodendron aralioides HOM05D005745 ORTHO05D006857 7.5e-146 521.2 416 64.4
CANSAT56G0536 Cannabis sativa HOM05D005745 ORTHO05D006857 1.3e-145 520.4 419 64.7
Actinidia10034 Actinidia chinensis HOM05D005745 ORTHO05D006857 4.1e-144 515.4 417 63.1
CSS0038489 Camellia sinensis var. sinensis HOM05D005745 ORTHO05D006857 2.1e-143 513.1 412 63.6
CSS0024424 Camellia sinensis var. sinensis HOM05D005745 ORTHO05D006857 3.5e-143 512.3 412 63.6
Dinv43791 Davidia involucrata HOM05D005745 ORTHO05D006857 2.3e-142 509.6 411 63.5
Nn6g33496 Nelumbo nucifera HOM05D005745 ORTHO05D006857 6.6e-142 508.1 418 62.9
TWI23G0914 Tripterygium wilfordii HOM05D005745 ORTHO05D006857 1.1e-141 507.3 444 60.6
Manes.01G259400 Manihot esculenta HOM05D005745 ORTHO05D006857 4.3e-141 505.4 418 62.7
Cpa.g.sc18.234 Carica papaya HOM05D005745 ORTHO05D006857 7.3e-141 504.6 414 64.7
FAN10G4182 Fragaria x ananassa HOM05D005745 ORTHO05D006857 1.2e-140 503.8 413 63.4
FAN06G1549 Fragaria x ananassa HOM05D005745 ORTHO05D006857 2.8e-140 502.7 413 62.7
Sabra14G0059300 Salix brachista HOM05D005745 ORTHO05D006857 6.8e-139 498.0 421 63.4
Ciclev10020429m.g Citrus clementina HOM05D005745 ORTHO05D006857 7.6e-138 494.6 404 64.1
Gohir.D12G109300 Gossypium hirsutum HOM05D005745 ORTHO05D006857 4.6e-135 485.3 415 61.7
Sc26g0000960 Simmondsia chinensis HOM05D005745 ORTHO05D006857 1.0e-134 484.2 413 62.5
arahy.Tifrunner.gnm1.ann1.5YG8M2 Arachis hypogaea HOM05D005745 ORTHO05D006857 1.3e-134 483.8 417 61.9
Lj3g0021692 Lotus japonicus HOM05D005745 ORTHO05D006857 1.3e-134 483.8 416 62.3
VMungo0331G1900 Vigna mungo HOM05D005745 ORTHO05D006857 3.0e-134 482.6 415 60.7
Gorai.008G118400 Gossypium raimondii HOM05D005745 ORTHO05D006857 3.9e-134 482.3 415 61.4
arahy.Tifrunner.gnm1.ann1.JLYP5G Arachis hypogaea HOM05D005745 ORTHO05D006857 6.6e-134 481.5 416 62.0
Aqoxy7G00357 Aquilegia oxysepala HOM05D005745 ORTHO05D006857 1.1e-133 480.7 413 59.1
Gohir.A12G105400 Gossypium hirsutum HOM05D005745 ORTHO05D006857 1.5e-133 480.3 413 61.3
Medtr8g031440 Medicago truncatula HOM05D005745 ORTHO05D006857 1.5e-133 480.3 419 60.1
DCAR_015932 Daucus carota HOM05D005745 ORTHO05D006857 3.3e-133 479.2 414 61.4
MSTRG.17255 Avicennia marina HOM05D005745 ORTHO05D006857 5.2e-131 471.9 413 58.8
EL10Ac1g00543 Beta vulgaris HOM05D005745 ORTHO05D006857 5.2e-131 471.9 422 59.0
vmacro13297 Vaccinium macrocarpon HOM05D005745 ORTHO05D006857 8.9e-131 471.1 417 60.7
AUR62033312 Chenopodium quinoa HOM05D005745 ORTHO05D006857 1.2e-130 470.7 420 59.8
Lalb_Chr04g0256771 Lupinus albus HOM05D005745 ORTHO05D006857 4.4e-130 468.8 419 59.4
AUR62033347 Chenopodium quinoa HOM05D005745 ORTHO05D006857 4.9e-129 465.3 420 59.3
Rhsim07G0017300 Rhododendron simsii HOM05D000683 ORTHO05D000507 1.9e-128 463.4 405 60.0
PGR042G0923 Punica granatum HOM05D005745 ORTHO05D006857 2.7e-127 459.5 428 59.8
PSO782G5186 Papaver somniferum HOM05D005745 ORTHO05D006857 3.5e-127 459.1 426 56.3
CsaV3_6G000430 Cucumis sativus L. HOM05D005745 ORTHO05D006857 1.0e-126 457.6 417 58.0
Cc02_g37770 Coffea canephora HOM05D005745 ORTHO05D006857 1.7e-126 456.8 413 58.8
CARHR000560 Cardamine hirsuta HOM05D005745 ORTHO05D006857 2.3e-126 456.4 416 56.5
Thhalv10007725m.g Eutrema salsugineum HOM05D005745 ORTHO05D006857 2.3e-126 456.4 416 57.9
PSO478G4474 Papaver somniferum HOM05D005745 ORTHO05D006857 2.3e-126 456.4 426 55.4
Hund27291 Selenicereus undatus HOM05D005745 ORTHO05D006857 2.3e-126 456.4 429 57.8
Sopen05g028140 Solanum pennellii HOM05D005745 ORTHO05D006857 5.1e-126 455.3 415 58.6
Oeu056358.1 Olea europaea HOM05D005745 ORTHO05D006857 8.7e-126 454.5 378 63.8
SGA_v2.0_scaffold277G46666 Striga asiatica HOM05D005745 ORTHO05D006857 1.5e-125 453.8 412 58.0
Solyc05g048810.4 Solanum lycopersicum HOM05D005745 ORTHO05D006857 1.9e-125 453.4 412 58.7
PGSC0003DMG400021653 Solanum tuberosum HOM05D005745 ORTHO05D006857 3.3e-125 452.6 412 58.3
Eucgr.E00173 Eucalyptus grandis HOM05D005745 ORTHO05D006857 1.3e-124 450.7 421 57.2
Lalb_Chr10g0097191 Lupinus albus HOM05D005745 ORTHO05D006857 1.3e-124 450.7 416 58.4
Eucgr.E00169 Eucalyptus grandis HOM05D005745 ORTHO05D006857 1.6e-124 450.3 421 57.2
CAN.G1535.1 Capsicum annuum HOM05D005745 ORTHO05D006857 4.8e-124 448.7 420 56.9
A10p00280 Brassica napus HOM05D005745 ORTHO05D006857 3.1e-123 446.0 415 57.6
Lsat_1_v5_gn_7_5060 Lactuca sativa HOM05D005745 ORTHO05D006857 4.0e-123 445.7 411 59.9
BcaB03g13612 Brassica carinata HOM05D005745 ORTHO05D006857 1.2e-122 444.1 413 57.6
Carub.0001s0045 Capsella rubella HOM05D005745 ORTHO05D006857 1.2e-122 444.1 417 57.1
Nitab4.5_0007346g0010 Nicotiana tabacum HOM05D005745 ORTHO05D006857 1.5e-122 443.7 435 56.8
Lj7C516G5 Lonicera japonica HOM05D005745 ORTHO05D006857 2.6e-122 443.0 350 65.4
ECA236G3051 Erigeron canadensis HOM05D005745 ORTHO05D006857 3.4e-122 442.6 409 58.2
BolC5t28819H Brassica oleracea HOM05D005745 ORTHO05D006857 9.9e-122 441.0 424 56.1
AL1G10580 Arabidopsis lyrata HOM05D005745 ORTHO05D006857 2.2e-121 439.9 417 55.6
RcHm_v2.0_Chr1g0354081 Rosa chinensis HOM05D005745 ORTHO05D006857 3.2e-120 436.0 436 54.1
C05p00290 Brassica napus HOM05D005745 ORTHO05D006857 7.1e-120 434.9 441 54.0
Peaxi162Scf00191g01322 Petunia axillaris HOM05D005745 ORTHO05D006857 1.6e-119 433.7 416 56.5
BraA10t42305Z Brassica rapa HOM05D005745 ORTHO05D006857 7.9e-119 431.4 433 54.5
Potri.014G081400 Populus trichocarpa HOM05D005745 ORTHO05D006857 7.9e-119 431.4 352 64.8
Aa31LG1G11130 Aethionema arabicum HOM05D005745 ORTHO05D006857 1.0e-118 431.0 445 52.4
Duzib138G1514 Durio zibethinus HOM05D005745 ORTHO05D006857 1.8e-118 430.3 350 64.9
Ca_23656_v3 Cicer arietinum L. HOM05D005745 ORTHO05D006857 2.3e-118 429.9 375 60.5
Sp1g00540 Schrenkiella parvula HOM05D005745 ORTHO05D006857 6.7e-118 428.3 416 54.8
AUR62004330 Chenopodium quinoa HOM05D005745 ORTHO05D006857 1.5e-117 427.2 426 55.6
ClCG06G003860 Citrullus lanatus HOM05D005745 ORTHO05D006857 7.4e-117 424.9 483 49.7
AT1G01760 Arabidopsis thaliana HOM05D005745 ORTHO05D006857 1.4e-112 410.6 383 57.2
Prupe.2G164800 Prunus persica HOM05D005745 ORTHO05D006857 7.1e-112 408.3 323 66.6
FAN03G1898 Fragaria x ananassa HOM05D005745 ORTHO05D006857 9.3e-112 407.9 413 54.5
THA.LOC104817020 Tarenaya hassleriana HOM05D005745 ORTHO05D006857 3.5e-111 406.0 383 56.7
HanXRQChr04g0121611 Helianthus annuus HOM05D005745 ORTHO05D006857 6.7e-110 401.7 351 62.7
Ah.05g176680 Amaranthus hybridus HOM05D005745 ORTHO05D006857 6.2e-108 395.2 398 55.0
Sed0009525 Sechium edule HOM05D005745 ORTHO05D006857 1.3e-105 387.5 352 59.4
Gohir.A12G105450 Gossypium hirsutum HOM05D005745 ORTHO05D006857 2.7e-103 379.8 355 57.2
MBI17_g21972_MAGBIO Magnolia biondii HOM05D005745 ORTHO05D006857 1.0e-102 377.9 401 51.9
FvH4_7g13861 Fragaria vesca HOM05D005745 ORTHO05D006857 3.7e-100 369.4 334 58.4
Nitab4.5_0002262g0010 Nicotiana tabacum HOM05D005745 ORTHO05D006857 2.7e-95 353.2 413 50.6
Glyma.07G073300 Glycine max HOM05D005745 ORTHO05D006857 6.7e-94 348.6 312 60.6
HPP92_001499 Vanilla planifolia HOM05D005745 ORTHO05D006857 8.7e-94 348.2 379 52.5
MBI18_g01486_MAGBIO Magnolia biondii HOM05D005745 ORTHO05D006857 2.2e-92 343.6 389 49.9
Zm00001eb067600 Zea mays HOM05D005745 ORTHO05D006857 5.1e-86 322.4 421 45.4
MELO3C021221.2 Cucumis melo HOM05D005745 ORTHO05D006857 6.7e-86 322.0 381 50.4
Phvul.010G096200 Phaseolus vulgaris HOM05D005745 ORTHO05D006857 8.2e-84 315.1 276 60.1
CDE06G1611 Ceratophyllum demersum HOM05D005745 ORTHO05D006857 3.1e-83 313.2 411 44.8
TPR.G39633 Trifolium pratense HOM05D005745 ORTHO05D006857 2.9e-81 306.6 225 68.0
Mapoly0023s0060 Marchantia polymorpha HOM05D005745 ORTHO05D006857 6.5e-81 305.4 512 38.5
Psat4g154320 Pisum sativum HOM05D005745 ORTHO05D006857 3.0e-78 296.6 279 57.7
FAN06G0933 Fragaria x ananassa HOM05D005745 ORTHO05D006857 5.2e-78 295.8 282 56.4
Atru.BG.56.p Acer truncatum HOM05D005745 ORTHO05D006857 3.7e-76 289.7 347 50.1
Pp3c4_14060 Physcomitrium patens HOM05D005745 ORTHO05D006857 2.6e-74 283.5 513 37.8
Prupe.2G165000 Prunus persica HOM05D005745 ORTHO05D006857 8.2e-68 261.9 409 42.3
AagrBONN_evm.TU.Sc2ySwM_362.160 Anthoceros agrestis HOM05D005745 ORTHO05D006857 4.7e-63 246.1 448 38.6
MD07G1140200 Malus domestica HOM05D005745 ORTHO05D006857 1.0e-62 245.0 289 52.2
Thecc.01G362500 Theobroma cacao HOM05D005745 ORTHO05D006857 4.0e-62 243.0 229 59.4
Zm00001eb420790 Zea mays HOM05D005745 ORTHO05D006857 7.5e-61 238.8 222 54.5
Glyma.03G013600 Glycine max HOM05D005745 ORTHO05D006857 2.8e-60 236.9 276 49.6
AUR62003100 Chenopodium quinoa HOM05D005745 ORTHO05D006857 5.4e-59 232.6 180 64.4
ATR0594G105 Amborella trichopoda HOM05D005745 ORTHO05D006857 2.7e-58 230.3 255 49.4
Os04g0683500 Oryza sativa ssp. japonica HOM05D005745 ORTHO05D006857 5.9e-58 229.2 315 42.2
AUR62034353 Chenopodium quinoa HOM05D005745 ORTHO05D006857 1.1e-56 224.9 183 62.8
SHI13462 Sapria himalayana HOM05D005745 ORTHO05D006857 9.8e-53 211.8 414 37.2
unitig_26.g9734 Utricularia gibba HOM05D005745 ORTHO05D006857 9.8e-53 211.8 358 40.2
TPR.G4413 Trifolium pratense HOM05D005745 ORTHO05D006857 3.5e-50 203.4 160 65.6
Oeu056357.1 Olea europaea HOM05D005745 ORTHO05D006857 4.3e-48 196.4 189 56.6
Zm00001eb191880 Zea mays HOM05D009386 ORTHO05D006857 6.1e-47 192.6 216 50.9
SEGI_32011 Sequoiadendron giganteum HOM05D005745 ORTHO05D006857 2.7e-42 177.2 194 47.9
SMO266G0032 Selaginella moellendorffii HOM05D005745 ORTHO05D006857 9.5e-40 168.7 280 41.1
MCO02G004 Micromonas commoda HOM05D005745 ORTHO05D006857 1.2e-39 168.3 424 32.5
Prupe.2G164500 Prunus persica HOM05D005745 ORTHO05D006857 2.2e-36 157.5 199 49.7
Zm00001eb442120 Zea mays HOM05D009386 ORTHO05D006857 7.8e-34 149.1 129 55.8
SEGI_32349 Sequoiadendron giganteum HOM05D005745 ORTHO05D006857 7.3e-32 142.5 411 27.5
AUR62034238 Chenopodium quinoa HOM05D002177 ORTHO05D002257 3.1e-30 137.1 111 61.3
FAN01G0854 Fragaria x ananassa HOM05D005745 ORTHO05D006857 8.9e-30 135.6 153 51.0
Atru.chr5.475 Acer truncatum HOM05D005745 ORTHO05D006857 1.5e-29 134.8 91 72.5
EL10Ac7g17708 Beta vulgaris HOM05D005745 ORTHO05D006857 1.5e-29 134.8 87 75.9
Glyma.03G013550 Glycine max HOM05D005745 ORTHO05D006857 1.5e-29 134.8 84 75.0
AUR62019766 Chenopodium quinoa HOM05D005745 ORTHO05D006857 3.4e-29 133.7 108 59.3
CBR_g12518 Chara braunii HOM05D004914 ORTHO05D006512 3.7e-28 130.2 820 22.8
PRCOL_00000230 Prasinoderma coloniale HOM05D005745 ORTHO05D006857 6.4e-28 129.4 416 29.6
Oeu056356.1 Olea europaea HOM05D005745 ORTHO05D006857 1.4e-27 128.3 81 80.2
COL.COLO4_12683 Corchorus olitorius HOM05D000683 ORTHO05D000507 3.3e-24 117.1 132 50.0
Cre14.g629283 Chlamydomonas reinhardtii HOM05D005745 ORTHO05D006857 6.6e-17 92.8 106 51.9
MCO14G396 Micromonas commoda HOM05D005745 ORTHO05D006857 2.1e-15 87.8 295 28.8
MCO15G493 Micromonas commoda HOM05D005745 ORTHO05D006857 1.4e-14 85.1 321 29.0
MD07G1140100 Malus domestica HOM05D005745 ORTHO05D006857 1.4e-11 75.1 62 58.1
PRCOL_00001873 Prasinoderma coloniale HOM05D005745 ORTHO05D006857 2.7e-10 70.9 330 26.7


User provided reference genes

Program Settings