Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.02G029100 Carya illinoinensis HOM05D005745 ORTHO05D006857 4.4e-247 857.4 417 100.0
CiPaw.02G029400 Carya illinoinensis HOM05D005745 ORTHO05D006857 4.2e-213 744.6 417 89.4
CiPaw.02G029200 Carya illinoinensis HOM05D005745 ORTHO05D006857 1.3e-177 626.7 353 88.7
QL08p049437 Quercus lobata HOM05D005745 ORTHO05D006857 2.7e-167 592.4 416 74.0
Cfa003949 Carpinus fangiana HOM05D000683 ORTHO05D000507 6.1e-156 554.7 387 73.4
Haze_15472 Corylus avellana HOM05D005745 ORTHO05D006857 1.3e-150 537.0 414 68.4
MD01G1055100 Malus domestica HOM05D005745 ORTHO05D006857 2.8e-140 502.7 420 64.3
GSVIVG01026870001 Vitis vinifera HOM05D005745 ORTHO05D006857 3.2e-136 489.2 437 59.5
TAR367G0002 Trochodendron aralioides HOM05D005745 ORTHO05D006857 3.0e-134 482.6 416 61.3
Nn6g33496 Nelumbo nucifera HOM05D005745 ORTHO05D006857 1.1e-133 480.7 414 61.4
Hma1.2p1_0001F.1_g001520 Hydrangea macrophylla HOM05D005745 ORTHO05D006857 1.9e-133 479.9 416 60.3
Actinidia20926 Actinidia chinensis HOM05D005745 ORTHO05D006857 8.1e-132 474.6 417 60.0
Dinv43791 Davidia involucrata HOM05D005745 ORTHO05D006857 1.4e-131 473.8 414 60.1
Actinidia10034 Actinidia chinensis HOM05D005745 ORTHO05D006857 1.8e-131 473.4 417 59.5
CSS0038489 Camellia sinensis var. sinensis HOM05D005745 ORTHO05D006857 6.8e-131 471.5 415 60.0
TWI23G0914 Tripterygium wilfordii HOM05D005745 ORTHO05D006857 8.9e-131 471.1 447 57.7
CSS0024424 Camellia sinensis var. sinensis HOM05D005745 ORTHO05D006857 1.2e-130 470.7 415 60.0
FAN10G4182 Fragaria x ananassa HOM05D005745 ORTHO05D006857 2.2e-129 466.5 413 61.0
FAN06G1549 Fragaria x ananassa HOM05D005745 ORTHO05D006857 2.9e-129 466.1 416 59.9
Manes.01G259400 Manihot esculenta HOM05D005745 ORTHO05D006857 2.9e-129 466.1 418 59.3
CANSAT56G0536 Cannabis sativa HOM05D005745 ORTHO05D006857 8.4e-129 464.5 416 60.8
Cpa.g.sc18.234 Carica papaya HOM05D005745 ORTHO05D006857 5.4e-128 461.8 417 61.2
Sabra14G0059300 Salix brachista HOM05D005745 ORTHO05D006857 1.0e-126 457.6 426 60.1
Ciclev10020429m.g Citrus clementina HOM05D005745 ORTHO05D006857 3.9e-126 455.7 404 60.9
Lj3g0021692 Lotus japonicus HOM05D005745 ORTHO05D006857 5.1e-126 455.3 418 59.3
Gohir.D12G109300 Gossypium hirsutum HOM05D005745 ORTHO05D006857 3.3e-125 452.6 420 58.6
VMungo0331G1900 Vigna mungo HOM05D005745 ORTHO05D006857 7.3e-125 451.4 416 57.9
Gorai.008G118400 Gossypium raimondii HOM05D005745 ORTHO05D006857 9.6e-125 451.1 420 58.6
DCAR_015932 Daucus carota HOM05D005745 ORTHO05D006857 1.6e-124 450.3 418 58.1
Medtr8g031440 Medicago truncatula HOM05D005745 ORTHO05D006857 6.2e-124 448.4 411 59.4
arahy.Tifrunner.gnm1.ann1.5YG8M2 Arachis hypogaea HOM05D005745 ORTHO05D006857 1.1e-123 447.6 419 58.2
Gohir.A12G105400 Gossypium hirsutum HOM05D005745 ORTHO05D006857 1.8e-123 446.8 416 58.4
Aqoxy7G00357 Aquilegia oxysepala HOM05D005745 ORTHO05D006857 6.9e-123 444.9 413 56.2
arahy.Tifrunner.gnm1.ann1.JLYP5G Arachis hypogaea HOM05D005745 ORTHO05D006857 6.9e-123 444.9 419 58.7
MSTRG.17255 Avicennia marina HOM05D005745 ORTHO05D006857 2.6e-122 443.0 417 56.4
Lalb_Chr04g0256771 Lupinus albus HOM05D005745 ORTHO05D006857 7.6e-122 441.4 415 57.8
Sc26g0000960 Simmondsia chinensis HOM05D005745 ORTHO05D006857 7.1e-120 434.9 413 58.8
EL10Ac1g00543 Beta vulgaris HOM05D005745 ORTHO05D006857 7.8e-119 431.4 420 56.9
PGSC0003DMG400021653 Solanum tuberosum HOM05D005745 ORTHO05D006857 1.7e-118 430.3 415 56.1
AUR62033312 Chenopodium quinoa HOM05D005745 ORTHO05D006857 5.1e-118 428.7 418 56.7
PGR042G0923 Punica granatum HOM05D005745 ORTHO05D006857 5.1e-118 428.7 430 57.0
Solyc05g048810.4 Solanum lycopersicum HOM05D005745 ORTHO05D006857 5.1e-118 428.7 415 56.4
CsaV3_6G000430 Cucumis sativus L. HOM05D005745 ORTHO05D006857 8.7e-118 427.9 413 56.4
PSO782G5186 Papaver somniferum HOM05D005745 ORTHO05D006857 1.1e-117 427.6 429 53.8
Sopen05g028140 Solanum pennellii HOM05D005745 ORTHO05D006857 1.1e-117 427.6 412 56.6
PSO478G4474 Papaver somniferum HOM05D005745 ORTHO05D006857 5.6e-117 425.2 424 53.1
Lalb_Chr10g0097191 Lupinus albus HOM05D005745 ORTHO05D006857 9.6e-117 424.5 419 55.4
AUR62033347 Chenopodium quinoa HOM05D005745 ORTHO05D006857 1.6e-116 423.7 418 56.2
Eucgr.E00173 Eucalyptus grandis HOM05D005745 ORTHO05D006857 6.2e-116 421.8 420 55.2
Eucgr.E00169 Eucalyptus grandis HOM05D005745 ORTHO05D006857 1.1e-115 421.0 420 55.2
vmacro13297 Vaccinium macrocarpon HOM05D005745 ORTHO05D006857 1.1e-115 421.0 419 56.1
Hund27291 Selenicereus undatus HOM05D005745 ORTHO05D006857 1.2e-114 417.5 426 55.4
Peaxi162Scf00191g01322 Petunia axillaris HOM05D005745 ORTHO05D006857 3.4e-114 416.0 416 55.3
Cc02_g37770 Coffea canephora HOM05D005745 ORTHO05D006857 7.6e-114 414.8 413 55.4
CAN.G1535.1 Capsicum annuum HOM05D005745 ORTHO05D006857 9.9e-114 414.5 415 54.0
Nitab4.5_0007346g0010 Nicotiana tabacum HOM05D005745 ORTHO05D006857 2.2e-113 413.3 434 53.9
Rhsim07G0017300 Rhododendron simsii HOM05D000683 ORTHO05D000507 2.9e-113 412.9 408 55.4
SGA_v2.0_scaffold277G46666 Striga asiatica HOM05D005745 ORTHO05D006857 4.9e-113 412.1 416 54.3
Lsat_1_v5_gn_7_5060 Lactuca sativa HOM05D005745 ORTHO05D006857 6.4e-113 411.8 409 56.2
ECA236G3051 Erigeron canadensis HOM05D005745 ORTHO05D006857 1.1e-112 411.0 412 55.1
AL1G10580 Arabidopsis lyrata HOM05D005745 ORTHO05D006857 3.2e-112 409.5 422 53.8
Oeu056358.1 Olea europaea HOM05D005745 ORTHO05D006857 4.2e-112 409.1 382 59.4
Thhalv10007725m.g Eutrema salsugineum HOM05D005745 ORTHO05D006857 9.3e-112 407.9 416 54.6
CARHR000560 Cardamine hirsuta HOM05D005745 ORTHO05D006857 3.5e-111 406.0 416 52.6
Lj7C516G5 Lonicera japonica HOM05D005745 ORTHO05D006857 3.5e-111 406.0 353 61.8
Ca_23656_v3 Cicer arietinum L. HOM05D005745 ORTHO05D006857 5.1e-110 402.1 372 58.3
BcaB03g13612 Brassica carinata HOM05D005745 ORTHO05D006857 1.1e-109 401.0 413 54.7
Carub.0001s0045 Capsella rubella HOM05D005745 ORTHO05D006857 1.6e-108 397.1 417 53.7
Potri.014G081400 Populus trichocarpa HOM05D005745 ORTHO05D006857 2.8e-108 396.4 355 61.7
A10p00280 Brassica napus HOM05D005745 ORTHO05D006857 4.8e-108 395.6 418 53.3
ClCG06G003860 Citrullus lanatus HOM05D005745 ORTHO05D006857 1.4e-107 394.0 483 47.6
Aa31LG1G11130 Aethionema arabicum HOM05D005745 ORTHO05D006857 1.8e-107 393.7 445 50.1
BolC5t28819H Brassica oleracea HOM05D005745 ORTHO05D006857 5.3e-107 392.1 423 52.2
AUR62004330 Chenopodium quinoa HOM05D005745 ORTHO05D006857 1.5e-106 390.6 420 53.1
Duzib138G1514 Durio zibethinus HOM05D005745 ORTHO05D006857 2.0e-106 390.2 353 60.6
RcHm_v2.0_Chr1g0354081 Rosa chinensis HOM05D005745 ORTHO05D006857 1.7e-105 387.1 437 50.8
C05p00290 Brassica napus HOM05D005745 ORTHO05D006857 6.4e-105 385.2 441 50.3
Sp1g00540 Schrenkiella parvula HOM05D005745 ORTHO05D006857 7.1e-104 381.7 416 51.9
BraA10t42305Z Brassica rapa HOM05D005745 ORTHO05D006857 9.3e-104 381.3 433 50.1
FAN03G1898 Fragaria x ananassa HOM05D005745 ORTHO05D006857 1.1e-101 374.4 411 51.8
Prupe.2G164800 Prunus persica HOM05D005745 ORTHO05D006857 3.3e-101 372.9 327 62.7
AT1G01760 Arabidopsis thaliana HOM05D005745 ORTHO05D006857 5.6e-101 372.1 388 54.6
HanXRQChr04g0121611 Helianthus annuus HOM05D005745 ORTHO05D006857 6.2e-100 368.6 350 58.6
THA.LOC104817020 Tarenaya hassleriana HOM05D005745 ORTHO05D006857 1.1e-99 367.9 383 53.5
Ah.05g176680 Amaranthus hybridus HOM05D005745 ORTHO05D006857 1.0e-94 351.3 395 51.6
Gohir.A12G105450 Gossypium hirsutum HOM05D005745 ORTHO05D006857 1.0e-94 351.3 355 54.9
Sed0009525 Sechium edule HOM05D005745 ORTHO05D006857 1.3e-94 350.9 352 56.0
MBI17_g21972_MAGBIO Magnolia biondii HOM05D005745 ORTHO05D006857 3.0e-94 349.7 401 50.4
Nitab4.5_0002262g0010 Nicotiana tabacum HOM05D005745 ORTHO05D006857 3.4e-90 336.3 415 49.2
FvH4_7g13861 Fragaria vesca HOM05D005745 ORTHO05D006857 4.5e-90 335.9 334 56.0
Glyma.07G073300 Glycine max HOM05D005745 ORTHO05D006857 8.7e-86 321.6 309 57.9
MBI18_g01486_MAGBIO Magnolia biondii HOM05D005745 ORTHO05D006857 1.6e-84 317.4 417 46.5
HPP92_001499 Vanilla planifolia HOM05D005745 ORTHO05D006857 2.8e-84 316.6 383 49.1
MELO3C021221.2 Cucumis melo HOM05D005745 ORTHO05D006857 1.6e-79 300.8 381 48.6
Zm00001eb067600 Zea mays HOM05D005745 ORTHO05D006857 1.6e-79 300.8 420 43.8
Phvul.010G096200 Phaseolus vulgaris HOM05D005745 ORTHO05D006857 8.2e-76 288.5 276 56.9
TPR.G39633 Trifolium pratense HOM05D005745 ORTHO05D006857 2.4e-75 287.0 222 66.2
CDE06G1611 Ceratophyllum demersum HOM05D005745 ORTHO05D006857 9.1e-75 285.0 411 42.3
Atru.BG.56.p Acer truncatum HOM05D005745 ORTHO05D006857 2.2e-73 280.4 345 49.0
Psat4g154320 Pisum sativum HOM05D005745 ORTHO05D006857 7.2e-72 275.4 276 55.8
FAN06G0933 Fragaria x ananassa HOM05D005745 ORTHO05D006857 9.4e-72 275.0 285 53.7
Mapoly0023s0060 Marchantia polymorpha HOM05D005745 ORTHO05D006857 2.3e-70 270.4 516 37.0
Pp3c4_14060 Physcomitrium patens HOM05D005745 ORTHO05D006857 1.6e-66 257.7 514 36.8
Prupe.2G165000 Prunus persica HOM05D005745 ORTHO05D006857 2.2e-65 253.8 407 41.8
MD07G1140200 Malus domestica HOM05D005745 ORTHO05D006857 1.4e-59 234.6 292 50.0
Thecc.01G362500 Theobroma cacao HOM05D005745 ORTHO05D006857 5.3e-59 232.6 232 56.5
AagrBONN_evm.TU.Sc2ySwM_362.160 Anthoceros agrestis HOM05D005745 ORTHO05D006857 1.0e-54 218.4 447 35.8
ATR0594G105 Amborella trichopoda HOM05D005745 ORTHO05D006857 1.5e-53 214.5 255 47.5
Zm00001eb420790 Zea mays HOM05D005745 ORTHO05D006857 1.3e-52 211.5 220 50.9
Glyma.03G013600 Glycine max HOM05D005745 ORTHO05D006857 1.7e-52 211.1 276 46.7
Os04g0683500 Oryza sativa ssp. japonica HOM05D005745 ORTHO05D006857 2.4e-51 207.2 316 41.1
SHI13462 Sapria himalayana HOM05D005745 ORTHO05D006857 2.4e-51 207.2 420 38.1
AUR62003100 Chenopodium quinoa HOM05D005745 ORTHO05D006857 1.0e-49 201.8 180 59.4
AUR62034353 Chenopodium quinoa HOM05D005745 ORTHO05D006857 1.6e-47 194.5 183 57.9
TPR.G4413 Trifolium pratense HOM05D005745 ORTHO05D006857 6.1e-47 192.6 158 63.9
Oeu056357.1 Olea europaea HOM05D005745 ORTHO05D006857 4.4e-45 186.4 193 54.9
unitig_26.g9734 Utricularia gibba HOM05D005745 ORTHO05D006857 2.3e-41 174.1 358 36.6
Zm00001eb191880 Zea mays HOM05D009386 ORTHO05D006857 1.4e-38 164.9 215 46.5
SEGI_32011 Sequoiadendron giganteum HOM05D005745 ORTHO05D006857 2.2e-36 157.5 194 45.4
Prupe.2G164500 Prunus persica HOM05D005745 ORTHO05D006857 2.7e-34 150.6 142 60.6
MCO02G004 Micromonas commoda HOM05D005745 ORTHO05D006857 7.3e-32 142.5 432 31.2
SEGI_32349 Sequoiadendron giganteum HOM05D005745 ORTHO05D006857 9.5e-32 142.1 411 27.7
SMO266G0032 Selaginella moellendorffii HOM05D005745 ORTHO05D006857 1.6e-31 141.4 278 37.8
Zm00001eb442120 Zea mays HOM05D009386 ORTHO05D006857 4.0e-30 136.7 126 54.8
Glyma.03G013550 Glycine max HOM05D005745 ORTHO05D006857 4.4e-29 133.3 85 72.9
Atru.chr5.475 Acer truncatum HOM05D005745 ORTHO05D006857 6.4e-28 129.4 91 70.3
EL10Ac7g17708 Beta vulgaris HOM05D005745 ORTHO05D006857 6.4e-28 129.4 85 74.1
Oeu056356.1 Olea europaea HOM05D005745 ORTHO05D006857 3.2e-27 127.1 85 76.5
FAN01G0854 Fragaria x ananassa HOM05D005745 ORTHO05D006857 5.4e-27 126.3 153 49.0
AUR62034238 Chenopodium quinoa HOM05D002177 ORTHO05D002257 1.2e-23 115.2 99 58.6
AUR62019766 Chenopodium quinoa HOM05D005745 ORTHO05D006857 1.8e-22 111.3 108 53.7
PRCOL_00000230 Prasinoderma coloniale HOM05D005745 ORTHO05D006857 2.3e-22 110.9 415 28.9
CBR_g12518 Chara braunii HOM05D004914 ORTHO05D006512 3.4e-21 107.1 95 63.2
Cre14.g629283 Chlamydomonas reinhardtii HOM05D005745 ORTHO05D006857 1.9e-16 91.3 106 50.0
COL.COLO4_12683 Corchorus olitorius HOM05D000683 ORTHO05D000507 8.1e-15 85.9 132 42.4
MCO15G493 Micromonas commoda HOM05D005745 ORTHO05D006857 5.2e-14 83.2 349 28.7
MCO14G396 Micromonas commoda HOM05D005745 ORTHO05D006857 4.4e-13 80.1 305 26.6
MD07G1140100 Malus domestica HOM05D005745 ORTHO05D006857 9.9e-13 79.0 62 59.7
PRCOL_00001873 Prasinoderma coloniale HOM05D005745 ORTHO05D006857 4.3e-08 63.5 280 27.5


User provided reference genes

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