Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.01G235400 Carya illinoinensis HOM05D003521 ORTHO05D000476 0.0e+00 1714.9 992 100.0
CiPaw.02G148500 Carya illinoinensis HOM05D003521 ORTHO05D000476 0.0e+00 1346.3 1020 78.2
QL05p021582 Quercus lobata HOM05D003521 ORTHO05D000476 0.0e+00 1289.2 992 79.1
Haze_16353 Corylus avellana HOM05D003521 ORTHO05D000476 0.0e+00 1247.6 1151 69.0
Duzib235G1126 Durio zibethinus HOM05D003521 ORTHO05D000476 0.0e+00 1124.4 994 72.0
Dinv30477 Davidia involucrata HOM05D003521 ORTHO05D000476 0.0e+00 1120.1 1000 71.0
RcHm_v2.0_Chr2g0139071 Rosa chinensis HOM05D003521 ORTHO05D000476 0.0e+00 1117.8 1040 66.3
Prupe.3G066400 Prunus persica HOM05D003521 ORTHO05D000476 0.0e+00 1104.0 992 68.0
Duzib160G0549 Durio zibethinus HOM05D003521 ORTHO05D000476 0.0e+00 1102.8 996 69.4
Thecc.06G092900 Theobroma cacao HOM05D003521 ORTHO05D000476 0.0e+00 1098.2 996 70.2
Ciclev10024803m.g Citrus clementina HOM05D003521 ORTHO05D000476 0.0e+00 1080.9 994 68.9
FvH4_6g31822 Fragaria vesca HOM05D003521 ORTHO05D000476 0.0e+00 1079.7 1053 65.4
Atru.chr1.3345 Acer truncatum HOM05D003521 ORTHO05D000476 0.0e+00 1079.3 995 70.5
TWI12G1038 Tripterygium wilfordii HOM05D003521 ORTHO05D000476 0.0e+00 1075.8 997 69.4
MD09G1208900 Malus domestica HOM05D003521 ORTHO05D000476 1.4e-311 1072.8 995 69.4
FAN02G3342 Fragaria x ananassa HOM05D003521 ORTHO05D000476 2.7e-311 1072.0 1048 64.5
Potri.003G052100 Populus trichocarpa HOM05D003521 ORTHO05D000476 1.8e-310 1069.3 1009 66.2
CSS0047293 Camellia sinensis var. sinensis HOM05D003521 ORTHO05D000476 3.9e-310 1068.1 1002 66.1
CSS0015824 Camellia sinensis var. sinensis HOM05D003521 ORTHO05D000476 6.7e-310 1067.4 1012 67.9
FAN14G2596 Fragaria x ananassa HOM05D003521 ORTHO05D000476 1.1e-309 1066.6 1039 64.5
FAN05G3380 Fragaria x ananassa HOM05D003521 ORTHO05D000476 5.7e-309 1064.3 1051 63.7
CANSAT56G3073 Cannabis sativa HOM05D003521 ORTHO05D000476 2.8e-308 1062.0 1011 68.4
Hma1.2p1_1195F.1_g265855 Hydrangea macrophylla HOM05D003521 ORTHO05D000476 2.8e-308 1062.0 999 66.7
TWI18G0852 Tripterygium wilfordii HOM05D003521 ORTHO05D000476 6.9e-307 1057.4 993 69.1
MD17G1190500 Malus domestica HOM05D003521 ORTHO05D000476 1.2e-306 1056.6 992 69.0
Lj3g0009081 Lotus japonicus HOM05D003521 ORTHO05D000476 3.4e-306 1055.0 1003 67.5
Lalb_Chr14g0373191 Lupinus albus HOM05D003521 ORTHO05D000476 3.8e-305 1051.6 991 66.3
TAR626G0208 Trochodendron aralioides HOM05D003521 ORTHO05D000476 3.2e-304 1048.5 993 66.1
VMungo1080G0951 Vigna mungo HOM05D003521 ORTHO05D000476 1.0e-302 1043.5 992 65.9
Lalb_Chr24g0395951 Lupinus albus HOM05D003521 ORTHO05D000476 6.7e-302 1040.8 990 65.3
Potri.001G185050 Populus trichocarpa HOM05D003521 ORTHO05D000476 1.1e-301 1040.0 1018 66.3
Phvul.005G169100 Phaseolus vulgaris HOM05D003521 ORTHO05D000476 2.0e-301 1039.3 992 67.2
Medtr2g101700 Medicago truncatula HOM05D003521 ORTHO05D000476 1.3e-300 1036.6 999 67.3
Actinidia21685 Actinidia chinensis HOM05D003521 ORTHO05D000476 8.2e-300 1033.9 1023 67.0
Rhsim08G0223900 Rhododendron simsii HOM05D003521 ORTHO05D000476 1.1e-299 1033.5 992 67.3
Manes.11G037600 Manihot esculenta HOM05D003521 ORTHO05D000476 2.4e-299 1032.3 995 68.3
Glyma.15G016700 Glycine max HOM05D003521 ORTHO05D000476 7.7e-298 1027.3 990 66.7
TAR383G0706 Trochodendron aralioides HOM05D003521 ORTHO05D000476 3.8e-297 1025.0 987 65.0
Psat5g297520 Pisum sativum HOM05D003521 ORTHO05D000476 7.2e-296 1020.8 1033 65.0
GSVIVG01038690001 Vitis vinifera HOM05D003521 ORTHO05D000476 2.1e-295 1019.2 993 65.2
Eucgr.F03041 Eucalyptus grandis HOM05D003521 ORTHO05D000476 1.0e-294 1016.9 1005 64.2
Gohir.A10G081600 Gossypium hirsutum HOM05D003521 ORTHO05D000476 1.4e-294 1016.5 999 67.2
Gorai.009G135200 Gossypium raimondii HOM05D003521 ORTHO05D000476 8.8e-294 1013.8 998 67.0
Gohir.D05G131500 Gossypium hirsutum HOM05D003521 ORTHO05D000476 5.7e-293 1011.1 1001 66.9
Ca_01135_v3 Cicer arietinum L. HOM05D003521 ORTHO05D000476 1.7e-292 1009.6 1011 65.3
Gohir.D10G069800 Gossypium hirsutum HOM05D003521 ORTHO05D000476 2.4e-291 1005.7 994 66.9
Sabra03G0027000 Salix brachista HOM05D003521 ORTHO05D000476 7.0e-291 1004.2 1061 63.2
Gorai.011G074100 Gossypium raimondii HOM05D003521 ORTHO05D000476 1.3e-289 1000.0 999 66.5
THA.LOC104812525 Tarenaya hassleriana HOM05D003521 ORTHO05D000476 1.3e-289 1000.0 1010 63.1
vmacro18884 Vaccinium macrocarpon HOM05D003521 ORTHO05D000476 2.2e-289 999.2 1045 64.5
Sc18g0003130 Simmondsia chinensis HOM05D003521 ORTHO05D000476 3.8e-289 998.4 1000 64.9
Gohir.A05G132400 Gossypium hirsutum HOM05D003521 ORTHO05D000476 9.4e-288 993.8 1001 66.7
Nn2g11676 Nelumbo nucifera HOM05D003521 ORTHO05D000476 6.1e-287 991.1 1050 60.6
Thhalv10018077m.g Eutrema salsugineum HOM05D003521 ORTHO05D000476 1.8e-286 989.6 1008 62.7
Nitab4.5_0010600g0010 Nicotiana tabacum HOM05D003521 ORTHO05D000476 1.8e-286 989.6 1033 61.3
AT1G79830 Arabidopsis thaliana HOM05D003521 ORTHO05D000476 3.3e-285 985.3 1002 61.9
COL.COLO4_30440 Corchorus olitorius HOM05D003521 ORTHO05D000476 3.3e-285 985.3 992 66.0
Peaxi162Scf00207g01030 Petunia axillaris HOM05D003521 ORTHO05D000476 4.4e-285 984.9 1017 62.6
Nn3g18099 Nelumbo nucifera HOM05D003521 ORTHO05D000476 5.7e-285 984.6 994 62.7
Glyma.13G356900 Glycine max HOM05D003521 ORTHO05D000476 3.7e-284 981.9 990 64.7
Nitab4.5_0000351g0100 Nicotiana tabacum HOM05D003521 ORTHO05D000476 5.9e-282 974.5 1022 60.5
AL2G41720 Arabidopsis lyrata HOM05D003521 ORTHO05D000476 2.9e-281 972.2 997 61.8
Carub.0002s2767 Capsella rubella HOM05D003521 ORTHO05D000476 5.0e-281 971.5 996 64.1
Sp5g35930 Schrenkiella parvula HOM05D003521 ORTHO05D000476 1.2e-279 966.8 1006 61.1
Cc04_g03000 Coffea canephora HOM05D003521 ORTHO05D000476 6.8e-278 961.1 1016 64.4
Aa31LG4G110 Aethionema arabicum HOM05D003521 ORTHO05D000476 4.4e-277 958.4 1025 62.1
C06p28740 Brassica napus HOM05D003521 ORTHO05D000476 1.1e-275 953.7 997 61.5
Dinv38015 Davidia involucrata HOM05D003521 ORTHO05D000476 3.1e-275 952.2 729 77.5
CARHR143590 Cardamine hirsuta HOM05D003521 ORTHO05D000476 9.1e-275 950.7 1003 61.4
Hund00648 Selenicereus undatus HOM05D003521 ORTHO05D000476 4.5e-274 948.3 1040 61.4
AUR62011668 Chenopodium quinoa HOM05D003521 ORTHO05D000476 7.7e-274 947.6 1000 61.9
MELO3C023279.2 Cucumis melo HOM05D003521 ORTHO05D000476 7.7e-274 947.6 1022 61.0
Aqoxy7G01582 Aquilegia oxysepala HOM05D003521 ORTHO05D000476 3.8e-273 945.3 1001 60.8
BolC6t38043H Brassica oleracea HOM05D003521 ORTHO05D000476 5.0e-273 944.9 1000 62.0
Sed0003107 Sechium edule HOM05D003521 ORTHO05D000476 6.6e-273 944.5 1021 61.1
arahy.Tifrunner.gnm1.ann1.A5WQDM Arachis hypogaea HOM05D003521 ORTHO05D000476 1.1e-272 943.7 1136 56.2
ClCG02G000820 Citrullus lanatus HOM05D003521 ORTHO05D000476 1.5e-272 943.3 1022 60.0
A07p26350 Brassica napus HOM05D003521 ORTHO05D000476 7.2e-272 941.0 997 60.7
AUR62016491 Chenopodium quinoa HOM05D003521 ORTHO05D000476 7.2e-272 941.0 1008 63.6
BraA07t30279Z Brassica rapa HOM05D003521 ORTHO05D000476 1.6e-271 939.9 1004 60.8
arahy.Tifrunner.gnm1.ann1.ZR40ID Arachis hypogaea HOM05D003521 ORTHO05D000476 1.4e-270 936.8 998 61.8
Lj9C509G5 Lonicera japonica HOM05D003521 ORTHO05D000476 2.3e-270 936.0 1088 58.2
SGA_v2.0_scaffold4G02009 Striga asiatica HOM05D003521 ORTHO05D000476 3.0e-270 935.6 1012 61.4
Sed0014905 Sechium edule HOM05D003521 ORTHO05D000476 5.7e-269 931.4 1021 60.6
Sabra01G0155200 Salix brachista HOM05D003521 ORTHO05D000476 2.2e-268 929.5 1037 60.1
Migut.D01015 Erythranthe guttata HOM05D003521 ORTHO05D000476 3.7e-268 928.7 994 62.1
Lalb_Chr04g0262811 Lupinus albus HOM05D003521 ORTHO05D000476 1.8e-267 926.4 1012 58.9
PGR102G1144 Punica granatum HOM05D003521 ORTHO05D000476 4.1e-267 925.2 995 62.6
Sopen06g024880 Solanum pennellii HOM05D003521 ORTHO05D000476 1.1e-264 917.1 1027 58.7
arahy.Tifrunner.gnm1.ann1.60NISA Arachis hypogaea HOM05D003521 ORTHO05D000476 1.9e-264 916.4 1151 54.8
CsaV3_2G017940 Cucumis sativus L. HOM05D003521 ORTHO05D000476 3.3e-264 915.6 1022 59.2
SalBow7G4780 Salvia bowleyana HOM05D003521 ORTHO05D000476 3.6e-263 912.1 1039 58.0
CAN.G1152.8 Capsicum annuum HOM05D003521 ORTHO05D000476 1.2e-261 907.1 1019 59.5
Migut.I00939 Erythranthe guttata HOM05D003521 ORTHO05D000476 1.4e-259 900.2 1022 58.0
Lsat_1_v5_gn_1_35300 Lactuca sativa HOM05D003521 ORTHO05D000476 2.8e-255 885.9 1012 59.7
Solyc06g066610.4 Solanum lycopersicum HOM05D003521 ORTHO05D000476 3.6e-255 885.6 1018 58.2
EL10Ac9g22035 Beta vulgaris HOM05D003521 ORTHO05D000476 3.1e-254 882.5 980 59.4
HanXRQChr10g0313461 Helianthus annuus HOM05D003521 ORTHO05D000476 5.2e-254 881.7 992 58.2
arahy.Tifrunner.gnm1.ann1.M6JGC2 Arachis hypogaea HOM05D003521 ORTHO05D000476 6.8e-254 881.3 999 61.4
PSO386G0042 Papaver somniferum HOM05D003521 ORTHO05D000476 2.7e-250 869.4 1018 57.1
ECA247G0039 Erigeron canadensis HOM05D003521 ORTHO05D000476 2.1e-247 859.8 1038 54.5
ECA234G0658 Erigeron canadensis HOM05D003521 ORTHO05D000476 1.4e-246 857.1 1004 57.3
SGA_v2.0_scaffold68G22978 Striga asiatica HOM05D003521 ORTHO05D000476 1.2e-245 854.0 1013 56.5
MSTRG.22661 Avicennia marina HOM05D003521 ORTHO05D000476 5.8e-245 851.7 1002 58.9
PSO210G6795 Papaver somniferum HOM05D003521 ORTHO05D000476 9.9e-245 850.9 1015 56.3
HanXRQChr12g0360801 Helianthus annuus HOM05D003521 ORTHO05D000476 6.4e-244 848.2 992 58.6
HanXRQChr04g0096181 Helianthus annuus HOM05D003521 ORTHO05D000476 1.9e-243 846.7 1003 56.0
Hund06634 Selenicereus undatus HOM05D003521 ORTHO05D000476 2.5e-240 836.3 1039 55.8
Lsat_1_v5_gn_5_130960 Lactuca sativa HOM05D003521 ORTHO05D000476 3.6e-239 832.4 994 58.7
Lj5C57T13 Lonicera japonica HOM05D003521 ORTHO05D000476 3.1e-238 829.3 1032 58.1
DCAR_016209 Daucus carota HOM05D003521 ORTHO05D000476 4.0e-238 828.9 989 58.7
CDE02G1875 Ceratophyllum demersum HOM05D003521 ORTHO05D000476 2.2e-236 823.2 1000 55.9
Actinidia24741 Actinidia chinensis HOM05D003521 ORTHO05D000476 2.1e-231 806.6 993 56.5
ATR0315G089 Amborella trichopoda HOM05D003521 ORTHO05D000476 9.3e-227 791.2 1010 54.0
unitig_62.g23765 Utricularia gibba HOM05D003521 ORTHO05D000476 7.8e-226 788.1 994 54.2
Zm00001eb295600 Zea mays HOM05D003521 ORTHO05D000476 6.0e-218 761.9 1050 51.1
Os05g0559900 Oryza sativa ssp. japonica HOM05D003521 ORTHO05D000476 2.1e-210 736.9 1059 49.6
ECA232G1585 Erigeron canadensis HOM05D003521 ORTHO05D000142 3.3e-200 703.0 1003 52.0
SHI10997 Sapria himalayana HOM05D003521 ORTHO05D000476 1.6e-199 700.7 1093 47.5
Cpa.g.sc1513.1 Carica papaya HOM05D003521 ORTHO05D000476 1.8e-182 644.0 480 78.8
Mapoly0013s0180 Marchantia polymorpha HOM05D003521 ORTHO05D000476 1.4e-174 617.8 1023 45.0
HanXRQChr16g0500841 Helianthus annuus HOM05D003521 ORTHO05D000476 1.3e-167 594.7 906 48.1
CDE08G0748 Ceratophyllum demersum HOM05D003521 ORTHO05D000476 3.2e-163 580.1 794 52.3
Pp3c12_5050 Physcomitrium patens HOM05D003521 ORTHO05D000476 5.7e-160 569.3 1007 43.4
AagrBONN_evm.TU.Sc2ySwM_344.1927 Anthoceros agrestis HOM05D003521 ORTHO05D000476 2.7e-149 533.9 724 52.2
HPP92_003835 Vanilla planifolia HOM05D003521 ORTHO05D000476 1.0e-148 531.9 543 62.8
Pp3c4_15860 Physcomitrium patens HOM05D003521 ORTHO05D000476 3.9e-132 476.9 833 44.5
Zm00001eb343520 Zea mays HOM05D003521 ORTHO05D000476 1.1e-110 405.6 397 63.5
CBR_g16051 Chara braunii HOM05D003521 ORTHO05D000476 2.7e-109 401.0 1032 35.4
Oeu024073.1 Olea europaea HOM05D003521 ORTHO05D000476 7.9e-77 293.1 524 45.2
unitig_46.g18558 Utricularia gibba HOM05D003521 ORTHO05D000476 4.2e-70 270.8 443 46.0
Ca_01143_v3 Cicer arietinum L. HOM05D003521 ORTHO05D000476 1.2e-61 242.7 318 56.6
CAN.G395.28 Capsicum annuum HOM05D003521 ORTHO05D000476 2.3e-60 238.4 337 51.0
Cpa.g.c33209.1 Carica papaya HOM05D003521 ORTHO05D000476 3.7e-58 231.1 407 43.0
Lsat_1_v5_gn_4_102620 Lactuca sativa HOM05D003521 ORTHO05D000476 8.8e-52 209.9 158 75.9
TPR.G5155 Trifolium pratense HOM05D003521 ORTHO05D000476 8.8e-52 209.9 137 89.1
CDE08G0544 Ceratophyllum demersum HOM05D003521 ORTHO05D000476 5.4e-49 200.7 205 59.5
Ca_25389_v3 Cicer arietinum L. HOM05D003521 ORTHO05D000476 5.9e-40 170.6 233 53.2
PRCOL_00000677 Prasinoderma coloniale HOM05D003521 ORTHO05D000476 6.6e-39 167.2 769 28.5
Cre03.g187000 Chlamydomonas reinhardtii HOM05D003521 ORTHO05D000476 1.6e-37 162.5 324 39.2
CAN.G135.35 Capsicum annuum HOM05D003521 ORTHO05D000476 1.2e-35 156.4 175 56.0
Oeu024072.1 Olea europaea HOM05D003521 ORTHO05D000476 9.8e-35 153.3 403 37.0
Zm00001eb343530 Zea mays HOM05D003521 ORTHO05D000476 1.3e-34 152.9 506 33.0
SMO298G0028 Selaginella moellendorffii HOM05D003521 ORTHO05D000476 4.1e-33 147.9 359 35.4
Lsat_1_v5_gn_4_178240 Lactuca sativa HOM05D003521 ORTHO05D000476 5.4e-33 147.5 120 74.2
Lsat_1_v5_gn_4_102580 Lactuca sativa HOM05D003521 ORTHO05D000476 1.2e-32 146.4 459 34.4
Cpa.g.c29821 Carica papaya HOM05D003521 ORTHO05D000476 3.5e-32 144.8 134 67.9
SEGI_27505 Sequoiadendron giganteum HOM05D003521 ORTHO05D000476 3.0e-31 141.7 460 32.6
Dinv38016 Davidia involucrata HOM05D003521 ORTHO05D000476 4.3e-30 137.9 136 59.6
CARHR143550 Cardamine hirsuta HOM05D003521 ORTHO05D000476 1.6e-29 136.0 207 46.4
MELO3C034685.2 Cucumis melo HOM05D003521 ORTHO05D000476 2.3e-28 132.1 88 79.5
Prupe.5G245900 Prunus persica HOM05D003521 ORTHO05D000476 1.2e-27 129.8 234 39.3
HanXRQChr16g0500831 Helianthus annuus HOM05D003521 ORTHO05D000476 5.8e-27 127.5 83 79.5
TPR.G19044 Trifolium pratense HOM05D003521 ORTHO05D000476 8.3e-26 123.6 79 88.6
Actinidia32725 Actinidia chinensis HOM05D003521 ORTHO05D000476 7.0e-25 120.6 107 65.4
Medtr2g043010 Medicago truncatula HOM05D003521 ORTHO05D000476 3.0e-23 115.2 158 53.8
AagrBONN_evm.TU.Sc2ySwM_344.1934 Anthoceros agrestis HOM05D003521 ORTHO05D000476 1.1e-22 113.2 356 30.6
Prupe.4G118900 Prunus persica HOM05D003521 ORTHO05D000476 4.3e-22 111.3 174 41.4
Ca_31247_v3 Cicer arietinum L. HOM05D003521 ORTHO05D000476 2.8e-21 108.6 76 82.9
HanXRQChr11g0325911 Helianthus annuus HOM05D003521 ORTHO05D000476 2.8e-21 108.6 84 72.6
Ca_16259_v3 Cicer arietinum L. HOM05D001034 ORTHO05D000476 6.2e-21 107.5 80 77.5
MCO14G500 Micromonas commoda HOM05D003521 ORTHO05D000476 3.1e-20 105.1 583 28.0
arahy.Tifrunner.gnm1.ann1.J2PPD0 Arachis hypogaea HOM05D003521 ORTHO05D000476 4.0e-20 104.8 67 82.1
arahy.Tifrunner.gnm1.ann1.SA7FDN Arachis hypogaea HOM05D003521 ORTHO05D000476 1.5e-19 102.8 63 84.1
Mapoly0111s0038 Marchantia polymorpha HOM05D003521 ORTHO05D000476 1.3e-18 99.8 658 25.2
CARHR212390 Cardamine hirsuta HOM05D003521 ORTHO05D000476 6.4e-18 97.4 97 64.9
CBR_g37651 Chara braunii HOM05D003521 ORTHO05D000476 9.2e-17 93.6 655 24.3
Lsat_1_v5_gn_2_62580 Lactuca sativa HOM05D003521 ORTHO05D000476 1.7e-15 89.4 60 83.3
Ca_25015_v3 Cicer arietinum L. HOM05D003521 ORTHO05D000476 5.1e-15 87.8 56 89.3
Lsat_1_v5_gn_4_102600 Lactuca sativa HOM05D003521 ORTHO05D000476 1.1e-14 86.7 74 71.6
TPR.G7293 Trifolium pratense HOM05D003521 ORTHO05D000476 1.9e-14 85.9 165 44.8
unitig_52.g17085 Utricularia gibba HOM05D003521 ORTHO05D000476 5.6e-14 84.3 170 42.4
BolC1t05061H Brassica oleracea HOM05D003521 ORTHO05D000476 1.2e-13 83.2 73 68.5
PSO596G0006 Papaver somniferum HOM05D003521 ORTHO05D000476 2.8e-13 82.0 65 72.3
PSO596G0043 Papaver somniferum HOM05D003521 ORTHO05D000476 2.8e-13 82.0 65 72.3
HanXRQChr07g0187491 Helianthus annuus HOM05D003521 ORTHO05D000476 5.8e-11 74.3 79 58.2
C09p10740 Brassica napus HOM05D003521 ORTHO05D000476 1.1e-09 70.1 72 62.5
Prupe.2G059800 Prunus persica HOM05D003521 ORTHO05D000476 2.4e-09 68.9 149 36.2
AagrBONN_evm.TU.Sc2ySwM_344.1936 Anthoceros agrestis HOM05D003521 ORTHO05D000476 1.6e-08 66.2 153 39.2
HanXRQChr01g0011031 Helianthus annuus HOM05D003521 ORTHO05D000476 2.7e-08 65.5 45 75.6
Dinv43032 Davidia involucrata HOM05D038150 ORTHO05D000476 7.3e-06 57.4 101 44.6


User provided reference genes

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