Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.01G234100 Carya illinoinensis HOM05D001353 ORTHO05D005187 5.8e-286 986.9 503 100.0
QL05p021219 Quercus lobata HOM05D001353 ORTHO05D005187 2.0e-209 732.6 510 76.3
Cfa002108 Carpinus fangiana HOM05D001353 ORTHO05D005187 7.8e-190 667.5 484 74.0
Haze_16338 Corylus avellana HOM05D001353 ORTHO05D005187 7.3e-188 661.0 477 74.0
Prupe.3G063900 Prunus persica HOM05D001353 ORTHO05D005187 6.2e-179 631.3 505 66.7
Lalb_Chr24g0396041 Lupinus albus HOM05D001353 ORTHO05D005187 1.0e-173 614.0 515 65.0
GSVIVG01017044001 Vitis vinifera HOM05D001353 ORTHO05D005187 2.8e-171 605.9 516 65.1
MD17G1188900 Malus domestica HOM05D001353 ORTHO05D005187 3.4e-169 599.0 500 64.8
TPR.G37234 Trifolium pratense HOM05D001353 ORTHO05D005187 5.8e-169 598.2 512 63.3
Glyma.15G018200 Glycine max HOM05D001353 ORTHO05D005187 1.0e-168 597.4 518 64.5
Ciclev10025383m.g Citrus clementina HOM05D001353 ORTHO05D005187 2.2e-168 596.3 506 63.4
Medtr2g101350 Medicago truncatula HOM05D001353 ORTHO05D005187 1.4e-167 593.6 510 64.5
CANSAT56G0514 Cannabis sativa HOM05D001353 ORTHO05D005187 6.0e-166 588.2 506 63.0
VMungo1080G1628 Vigna mungo HOM05D001353 ORTHO05D005187 1.5e-164 583.6 516 63.0
Thecc.06G095300 Theobroma cacao HOM05D001353 ORTHO05D005187 1.9e-164 583.2 510 62.9
Ca_01153_v3 Cicer arietinum L. HOM05D001353 ORTHO05D005187 1.3e-163 580.5 512 61.9
Lj3g0013233 Lotus japonicus HOM05D001353 ORTHO05D005187 1.4e-162 577.0 512 60.9
Sed0007714 Sechium edule HOM05D001353 ORTHO05D005187 5.9e-161 571.6 514 61.3
Phvul.005G170400 Phaseolus vulgaris HOM05D001353 ORTHO05D005187 3.8e-160 568.9 512 61.5
CSS0044224 Camellia sinensis var. sinensis HOM05D001353 ORTHO05D005187 3.2e-159 565.8 523 60.6
Eucgr.F03052 Eucalyptus grandis HOM05D001353 ORTHO05D005187 2.1e-158 563.1 506 62.6
CsaV3_7G033510 Cucumis sativus L. HOM05D001353 ORTHO05D005187 1.3e-157 560.5 512 61.3
FvH4_6g31960 Fragaria vesca HOM05D001353 ORTHO05D005187 1.3e-157 560.5 505 62.8
FAN02G4091 Fragaria x ananassa HOM05D001353 ORTHO05D005187 2.2e-152 543.1 503 61.8
arahy.Tifrunner.gnm1.ann1.K0TTLC Arachis hypogaea HOM05D001353 ORTHO05D005187 8.5e-152 541.2 530 58.1
Nn2g11646 Nelumbo nucifera HOM05D001353 ORTHO05D005187 1.4e-151 540.4 524 56.5
Actinidia32713 Actinidia chinensis HOM05D001353 ORTHO05D005187 1.9e-151 540.0 519 59.2
arahy.Tifrunner.gnm1.ann1.8T8ZNV Arachis hypogaea HOM05D001353 ORTHO05D005187 2.5e-151 539.7 545 56.7
Gorai.003G064100 Gossypium raimondii HOM05D001353 ORTHO05D005187 2.7e-150 536.2 514 59.7
RcHm_v2.0_Chr2g0139461 Rosa chinensis HOM05D001353 ORTHO05D005187 3.6e-150 535.8 506 61.9
Duzib160G0428 Durio zibethinus HOM05D001353 ORTHO05D005187 3.9e-149 532.3 458 63.3
Dinv30464 Davidia involucrata HOM05D001353 ORTHO05D005187 3.4e-145 519.2 497 59.6
TAR383G0250 Trochodendron aralioides HOM05D001353 ORTHO05D005187 3.4e-145 519.2 512 57.8
MELO3C024262.2 Cucumis melo HOM05D001353 ORTHO05D005187 3.8e-144 515.8 417 67.6
Potri.001G186600 Populus trichocarpa HOM05D001353 ORTHO05D005187 4.2e-143 512.3 500 59.0
QL05p021238 Quercus lobata HOM05D001353 ORTHO05D005187 9.4e-143 511.1 333 79.9
THA.LOC104817973 Tarenaya hassleriana HOM05D001353 ORTHO05D005187 2.0e-140 503.4 504 56.2
CAN.G438.39 Capsicum annuum HOM05D001353 ORTHO05D005187 7.4e-140 501.5 523 53.9
Gohir.D03G060300 Gossypium hirsutum HOM05D001353 ORTHO05D005187 6.3e-139 498.4 461 61.2
Solyc03g120480.3 Solanum lycopersicum HOM05D001353 ORTHO05D005187 6.3e-139 498.4 519 54.3
Aqoxy7G01510 Aquilegia oxysepala HOM05D001353 ORTHO05D005187 5.3e-138 495.4 520 54.8
Sopen03g039360 Solanum pennellii HOM05D001353 ORTHO05D005187 5.3e-138 495.4 515 54.6
Lsat_1_v5_gn_1_34781 Lactuca sativa HOM05D001353 ORTHO05D005187 3.5e-137 492.7 510 53.7
Sabra01G0153700 Salix brachista HOM05D001353 ORTHO05D005187 4.5e-137 492.3 498 56.8
PGR102G2383 Punica granatum HOM05D001353 ORTHO05D005187 5.9e-137 491.9 514 56.8
ClCG09G001840 Citrullus lanatus HOM05D001353 ORTHO05D005187 1.3e-136 490.7 489 57.7
MBI01_g06185_MAGBIO Magnolia biondii HOM05D001353 ORTHO05D002359 2.9e-136 489.6 534 54.1
Rhsim12G0201500 Rhododendron simsii HOM05D001353 ORTHO05D000070 2.9e-136 489.6 561 50.8
TWI12G1071 Tripterygium wilfordii HOM05D001353 ORTHO05D005187 1.9e-135 486.9 515 53.6
Carub.0003s1598 Capsella rubella HOM05D001353 ORTHO05D005187 4.2e-135 485.7 501 55.7
PSO566G0332 Papaver somniferum HOM05D001353 ORTHO05D005187 4.0e-133 479.2 505 54.3
ECA247G1811 Erigeron canadensis HOM05D001353 ORTHO05D005187 6.7e-133 478.4 514 53.5
PSO782G2586 Papaver somniferum HOM05D001353 ORTHO05D005187 6.7e-133 478.4 510 54.3
Cc04_g02860 Coffea canephora HOM05D001353 ORTHO05D005187 1.5e-132 477.2 536 51.7
Manes.11G036600 Manihot esculenta HOM05D001353 ORTHO05D005187 4.4e-132 475.7 507 53.8
Hma1.2p1_0659F.1_g197330 Hydrangea macrophylla HOM05D001353 ORTHO05D005187 5.7e-132 475.3 504 52.8
Thhalv10020736m.g Eutrema salsugineum HOM05D001353 ORTHO05D005187 1.1e-130 471.1 499 55.3
Sp3g14600 Schrenkiella parvula HOM05D001353 ORTHO05D005187 2.4e-130 469.9 499 53.9
Nitab4.5_0006985g0030 Nicotiana tabacum HOM05D001353 ORTHO05D005187 9.1e-130 468.0 474 55.7
Aa31LG8G3360 Aethionema arabicum HOM05D001353 ORTHO05D005187 2.7e-129 466.5 496 53.4
AL3G28930 Arabidopsis lyrata HOM05D001353 ORTHO05D005187 2.7e-129 466.5 498 54.4
Gohir.D09G081500 Gossypium hirsutum HOM05D001353 ORTHO05D005187 3.8e-128 462.6 396 61.9
Peaxi162Scf00015g00128 Petunia axillaris HOM05D001353 ORTHO05D005187 6.5e-128 461.8 443 57.6
Gohir.A09G081400 Gossypium hirsutum HOM05D001353 ORTHO05D005187 5.5e-127 458.8 467 56.3
Gorai.006G097100 Gossypium raimondii HOM05D001353 ORTHO05D005187 1.6e-126 457.2 544 50.2
MSTRG.11044 Avicennia marina HOM05D001353 ORTHO05D005187 2.1e-126 456.8 510 53.1
vmacro16977 Vaccinium macrocarpon HOM05D001353 ORTHO05D005187 1.4e-125 454.1 556 49.1
SalBow2G1883 Salvia bowleyana HOM05D001353 ORTHO05D005187 2.3e-125 453.4 561 49.6
EL10Ac9g22047 Beta vulgaris HOM05D001353 ORTHO05D005187 1.2e-124 451.1 546 49.1
DCAR_007575 Daucus carota HOM05D001353 ORTHO05D005187 9.8e-124 448.0 465 56.1
Migut.I00929 Erythranthe guttata HOM05D001353 ORTHO05D005187 1.4e-122 444.1 382 62.3
Lj9A510G79 Lonicera japonica HOM05D001353 ORTHO05D005187 6.5e-120 435.3 452 57.3
ATR0315G016 Amborella trichopoda HOM05D001353 ORTHO05D005187 5.5e-119 432.2 353 64.3
HanXRQChr04g0096261 Helianthus annuus HOM05D001353 ORTHO05D005187 2.8e-118 429.9 511 49.3
CARHR091420 Cardamine hirsuta HOM05D001353 ORTHO05D005187 4.7e-118 429.1 333 66.7
SGA_v2.0_scaffold5G02539 Striga asiatica HOM05D001353 ORTHO05D005187 4.7e-118 429.1 555 47.4
PGSC0003DMG401002551 Solanum tuberosum HOM05D001353 ORTHO05D005187 1.5e-116 424.1 495 50.9
BcaC01g03834 Brassica carinata HOM05D001353 ORTHO05D005187 7.5e-116 421.8 440 55.2
A03p39730 Brassica napus HOM05D001353 ORTHO05D005187 3.7e-115 419.5 494 49.8
CDE05G3629 Ceratophyllum demersum HOM05D001353 ORTHO05D005187 6.3e-115 418.7 512 49.2
Psat1g005440 Pisum sativum HOM05D001353 ORTHO05D005187 1.4e-114 417.5 418 58.1
BraA03t13123Z Brassica rapa HOM05D001353 ORTHO05D005187 3.1e-114 416.4 500 50.2
HPP92_005271 Vanilla planifolia HOM05D001353 ORTHO05D005187 3.8e-112 409.5 494 48.8
BcaB04g18890 Brassica carinata HOM05D001353 ORTHO05D005187 6.6e-112 408.7 470 51.3
AUR62031870 Chenopodium quinoa HOM05D001353 ORTHO05D005187 4.7e-110 402.5 365 60.5
Hund00659 Selenicereus undatus HOM05D001353 ORTHO05D005187 5.2e-109 399.1 453 52.1
Os01g0231900 Oryza sativa ssp. japonica HOM05D001353 ORTHO05D005187 4.1e-106 389.4 481 46.4
Nitab4.5_0011578g0030 Nicotiana tabacum HOM05D001353 ORTHO05D005187 5.6e-103 379.0 439 51.7
C03p48170 Brassica napus HOM05D001353 ORTHO05D005187 1.2e-102 377.9 538 44.8
FAN14G4842 Fragaria x ananassa HOM05D001353 ORTHO05D005187 1.4e-98 364.4 381 57.5
FAN05G1388 Fragaria x ananassa HOM05D001353 ORTHO05D005187 5.4e-98 362.5 381 58.3
AT3G16230 Arabidopsis thaliana HOM05D001353 ORTHO05D005187 1.3e-91 341.3 409 50.4
AUR62022162 Chenopodium quinoa HOM05D001353 ORTHO05D005187 1.7e-88 330.9 508 44.3
Actinidia21695 Actinidia chinensis HOM05D001353 ORTHO05D005187 9.5e-87 325.1 315 60.6
BolC3t17020H Brassica oleracea HOM05D001353 ORTHO05D005187 2.4e-85 320.5 423 47.5
Nitab4.5_0000568g0110 Nicotiana tabacum HOM05D001353 ORTHO05D005187 1.2e-84 318.2 293 58.0
AagrBONN_evm.TU.Sc2ySwM_368.659 Anthoceros agrestis HOM05D001353 ORTHO05D005187 3.4e-84 316.6 433 42.3
Gohir.A02G119300 Gossypium hirsutum HOM05D001353 ORTHO05D005187 4.9e-83 312.8 218 73.4
Cpa.g.sc109.36 Carica papaya HOM05D001353 ORTHO05D005187 1.6e-81 307.8 187 79.7
HanXRQChr04g0096271 Helianthus annuus HOM05D001353 ORTHO05D005187 6.0e-81 305.8 352 47.4
ATR0315G123 Amborella trichopoda HOM05D001353 ORTHO05D005187 1.5e-79 301.2 301 56.1
Zm00001eb119210 Zea mays HOM05D001353 ORTHO05D005187 2.2e-75 287.3 461 41.4
Nitab4.5_0001591g0200 Nicotiana tabacum HOM05D001353 ORTHO05D005187 3.9e-72 276.6 284 54.6
Sc10g0007280 Simmondsia chinensis HOM05D001353 ORTHO05D005187 2.4e-69 267.3 230 62.2
Carub.0003s1597 Capsella rubella HOM05D001353 ORTHO05D005187 6.0e-65 252.7 273 51.6
CARHR091410 Cardamine hirsuta HOM05D001353 ORTHO05D005187 8.7e-64 248.8 272 48.5
COL.COLO4_30466 Corchorus olitorius HOM05D001353 ORTHO05D005187 8.7e-64 248.8 185 68.6
CAN.G206.170 Capsicum annuum HOM05D001353 ORTHO05D005187 4.3e-63 246.5 190 64.2
AL3G28920 Arabidopsis lyrata HOM05D001353 ORTHO05D005187 9.6e-63 245.4 273 49.1
Mapoly0110s0022 Marchantia polymorpha HOM05D001353 ORTHO05D005187 2.8e-62 243.8 463 35.9
BcaC09g48591 Brassica carinata HOM05D001353 ORTHO05D005187 4.8e-62 243.0 312 45.5
Nitab4.5_0021337g0010 Nicotiana tabacum HOM05D001353 ORTHO05D005187 4.8e-62 243.0 264 53.4
Atru.chr1.3463 Acer truncatum HOM05D001353 ORTHO05D005187 5.8e-60 236.1 154 77.3
COL.COLO4_30465 Corchorus olitorius HOM05D000453 ORTHO05D000387 1.9e-58 231.1 297 48.5
BcaC01g03832 Brassica carinata HOM05D001353 ORTHO05D005187 7.9e-57 225.7 142 76.8
PGSC0003DMG400001428 Solanum tuberosum HOM05D001353 ORTHO05D005187 3.0e-56 223.8 167 67.1
SMO340G0259 Selaginella moellendorffii HOM05D001353 ORTHO05D005187 1.1e-55 221.9 273 45.4
Thhalv10021339m.g Eutrema salsugineum HOM05D001353 ORTHO05D005187 1.6e-54 218.0 275 46.2
BraA01t03849Z Brassica rapa HOM05D001353 ORTHO05D005187 8.2e-54 215.7 284 44.4
A01p37890 Brassica napus HOM05D001353 ORTHO05D005187 3.1e-53 213.8 284 44.4
C01p48010 Brassica napus HOM05D001353 ORTHO05D005187 4.0e-53 213.4 284 44.0
Solyc02g088200.4 Solanum lycopersicum HOM05D001353 ORTHO05D005187 1.2e-52 211.8 168 64.9
Os01g0231800 Oryza sativa ssp. japonica HOM05D001353 ORTHO05D005187 1.3e-51 208.4 288 43.4
Sopen02g032890 Solanum pennellii HOM05D001353 ORTHO05D005187 1.3e-51 208.4 167 64.7
BcaC09g48592 Brassica carinata HOM05D001353 ORTHO05D005187 1.4e-50 204.9 273 42.9
Glyma.13G355900 Glycine max HOM05D001353 ORTHO05D005187 7.1e-50 202.6 193 60.1
SHI11057 Sapria himalayana HOM05D001353 ORTHO05D005187 1.6e-46 191.4 166 59.0
unitig_22.g6212 Utricularia gibba HOM05D001353 ORTHO05D005187 1.2e-44 185.3 121 74.4
CBR_g20332 Chara braunii HOM05D001353 ORTHO05D005187 5.0e-43 179.9 170 55.3
Sp3g14590 Schrenkiella parvula HOM05D001353 ORTHO05D005187 9.4e-42 175.6 180 50.6
Gohir.A02G119400 Gossypium hirsutum HOM05D001353 ORTHO05D005187 4.6e-41 173.3 188 53.7
Pp3c16_10470 Physcomitrium patens HOM05D001353 ORTHO05D005187 1.7e-35 154.8 262 35.1
BcaC01g03835 Brassica carinata HOM05D001353 ORTHO05D005187 1.4e-34 151.8 268 36.2
Atru.chr1.3457 Acer truncatum HOM05D001353 ORTHO05D005187 1.2e-33 148.7 102 77.5
Nitab4.5_0000568g0120 Nicotiana tabacum HOM05D001353 ORTHO05D005187 1.4e-32 145.2 115 67.0
AT3G16220 Arabidopsis thaliana HOM05D001353 ORTHO05D005187 3.0e-32 144.1 202 42.1
CANSAT56G3175 Cannabis sativa HOM05D001353 ORTHO05D005187 8.8e-32 142.5 142 55.6
QL05p021244 Quercus lobata HOM05D001353 ORTHO05D029171 7.4e-31 139.4 127 62.2
Cre01.g008000 Chlamydomonas reinhardtii HOM05D001353 ORTHO05D005187 1.3e-27 128.6 400 25.0
Nitab4.5_0000568g0100 Nicotiana tabacum HOM05D001353 ORTHO05D005187 5.5e-26 123.2 166 43.4
BolC3t17095H Brassica oleracea HOM05D001353 ORTHO05D000017 6.7e-24 116.3 279 35.5
C03p48160 Brassica napus HOM05D001353 ORTHO05D005187 1.8e-21 108.2 186 34.9
BolC3t17094H Brassica oleracea HOM05D001353 ORTHO05D005187 7.0e-21 106.3 187 34.8
MCO06G129 Micromonas commoda HOM05D001353 ORTHO05D005187 1.1e-18 99.0 214 31.3
BcaC09g48593 Brassica carinata HOM05D001353 ORTHO05D005187 3.2e-18 97.4 88 51.1
Medtr8g033020 Medicago truncatula HOM05D001353 ORTHO05D005187 1.6e-17 95.1 51 78.4
ATR0315G092 Amborella trichopoda HOM05D001353 ORTHO05D005187 1.4e-16 92.0 63 66.7
SEGI_15304 Sequoiadendron giganteum HOM05D001353 ORTHO05D005187 1.4e-16 92.0 72 61.1
FvH4_4g23310 Fragaria vesca HOM05D001353 ORTHO05D005187 8.8e-16 89.4 129 45.0
FAN12G2992 Fragaria x ananassa HOM05D001353 ORTHO05D005187 3.3e-15 87.4 128 44.5
unitig_22.g6211 Utricularia gibba HOM05D001353 ORTHO05D005187 5.9e-12 76.6 111 42.3
Cpa.g.c32037 Carica papaya HOM05D001353 ORTHO05D005187 7.7e-12 76.3 92 46.7
FAN02G1855 Fragaria x ananassa HOM05D001353 ORTHO05D005187 1.1e-10 72.4 39 89.7
Medtr1g036590 Medicago truncatula HOM05D000351 ORTHO05D005187 7.2e-10 69.7 115 40.0
Psat1g156000 Pisum sativum HOM05D001353 ORTHO05D005187 8.0e-09 66.2 54 63.0
SHI11059 Sapria himalayana HOM05D001353 ORTHO05D005187 2.3e-08 64.7 35 82.9
FAN27G1500 Fragaria x ananassa HOM05D000240 ORTHO05D025578 8.8e-08 62.8 153 34.6


User provided reference genes

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