Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.01G147700 Carya illinoinensis HOM05D001406 ORTHO05D006300 0.0e+00 2565.4 1347 100.0
Cfa015397 Carpinus fangiana HOM05D001406 ORTHO05D006300 0.0e+00 2057.7 1356 81.8
Haze_01188 Corylus avellana HOM05D001406 ORTHO05D006300 0.0e+00 2056.2 1357 82.2
QL06p009115 Quercus lobata HOM05D001406 ORTHO05D006300 0.0e+00 2004.2 1360 79.6
CSS0049595 Camellia sinensis var. sinensis HOM05D001406 ORTHO05D006300 0.0e+00 1835.1 1361 73.0
Dinv44369 Davidia involucrata HOM05D001406 ORTHO05D006300 0.0e+00 1822.8 1358 73.3
Thecc.04G286100 Theobroma cacao HOM05D001406 ORTHO05D006300 0.0e+00 1821.2 1360 72.0
Duzib212G0336 Durio zibethinus HOM05D001406 ORTHO05D006300 0.0e+00 1805.8 1358 71.4
Hma1.2p1_1185F.1_g265020 Hydrangea macrophylla HOM05D001406 ORTHO05D006300 0.0e+00 1785.8 1360 71.2
Gorai.011G191000 Gossypium raimondii HOM05D001406 ORTHO05D006300 0.0e+00 1778.1 1357 70.1
MD16G1167900 Malus domestica HOM05D001406 ORTHO05D006300 0.0e+00 1776.5 1356 70.2
Gohir.D10G170900 Gossypium hirsutum HOM05D001406 ORTHO05D006300 0.0e+00 1775.0 1357 70.0
Lj6C678T4 Lonicera japonica HOM05D001406 ORTHO05D006300 0.0e+00 1755.3 1361 70.5
Actinidia00013 Actinidia chinensis HOM05D001406 ORTHO05D006300 0.0e+00 1732.2 1360 69.8
TAR370G0006 Trochodendron aralioides HOM05D001406 ORTHO05D006300 0.0e+00 1725.3 1362 69.4
Gohir.A10G164700 Gossypium hirsutum HOM05D001406 ORTHO05D006300 0.0e+00 1709.5 1357 68.5
Nn4g25794 Nelumbo nucifera HOM05D001406 ORTHO05D006300 0.0e+00 1702.2 1367 67.8
TWI53G1101 Tripterygium wilfordii HOM05D001406 ORTHO05D006300 0.0e+00 1698.3 1370 68.4
Potri.010G013300 Populus trichocarpa HOM05D001406 ORTHO05D006300 0.0e+00 1695.6 1352 69.2
RcHm_v2.0_Chr4g0422791 Rosa chinensis HOM05D001406 ORTHO05D006300 0.0e+00 1694.9 1355 68.3
CANSAT78G1952 Cannabis sativa HOM05D001406 ORTHO05D006300 0.0e+00 1689.9 1355 67.9
Rhsim02G0008400 Rhododendron simsii HOM05D001406 ORTHO05D006300 0.0e+00 1683.7 1403 67.1
GSVIVG01017722001 Vitis vinifera HOM05D001406 ORTHO05D006300 0.0e+00 1683.3 1360 68.4
Cpa.g.sc16.181 Carica papaya HOM05D001406 ORTHO05D006300 0.0e+00 1678.3 1363 67.9
FvH4_4g18310 Fragaria vesca HOM05D001406 ORTHO05D006300 0.0e+00 1674.1 1356 67.2
Sabra10G0008500 Salix brachista HOM05D001406 ORTHO05D006300 0.0e+00 1672.1 1356 67.8
FAN12G4194 Fragaria x ananassa HOM05D001406 ORTHO05D006300 0.0e+00 1666.0 1356 67.0
Glyma.09G044100 Glycine max HOM05D001406 ORTHO05D006300 0.0e+00 1664.8 1359 66.7
vmacro15227 Vaccinium macrocarpon HOM05D001406 ORTHO05D006300 0.0e+00 1663.7 1395 66.7
Sed0021428 Sechium edule HOM05D001406 ORTHO05D006300 0.0e+00 1662.9 1360 67.0
Phvul.009G248800 Phaseolus vulgaris HOM05D001406 ORTHO05D006300 0.0e+00 1655.2 1362 65.9
Glyma.15G149000 Glycine max HOM05D001406 ORTHO05D006300 0.0e+00 1648.3 1358 66.4
arahy.Tifrunner.gnm1.ann1.4JB89L Arachis hypogaea HOM05D001406 ORTHO05D006300 0.0e+00 1635.2 1365 65.1
Ciclev10004172m.g Citrus clementina HOM05D001406 ORTHO05D006300 0.0e+00 1624.8 1350 66.9
VMungo1309G1537 Vigna mungo HOM05D001406 ORTHO05D006300 0.0e+00 1616.7 1362 64.8
CAN.G484.37 Capsicum annuum HOM05D001406 ORTHO05D006300 0.0e+00 1610.9 1353 64.2
PGSC0003DMG401004707 Solanum tuberosum HOM05D001406 ORTHO05D006300 0.0e+00 1605.5 1357 64.3
Hund20543 Selenicereus undatus HOM05D001406 ORTHO05D006300 0.0e+00 1605.1 1366 64.3
Cc03_g01780 Coffea canephora HOM05D001406 ORTHO05D006300 0.0e+00 1598.9 1372 64.6
Psat1g154920 Pisum sativum HOM05D001406 ORTHO05D006300 0.0e+00 1593.9 1364 63.7
Ca_01929_v3 Cicer arietinum L. HOM05D001406 ORTHO05D006300 0.0e+00 1589.3 1368 64.0
Sopen12g034190 Solanum pennellii HOM05D001406 ORTHO05D006300 0.0e+00 1589.3 1327 64.8
arahy.Tifrunner.gnm1.ann1.Q4RDUH Arachis hypogaea HOM05D001406 ORTHO05D006300 0.0e+00 1580.8 1405 62.6
Oeu026316.2 Olea europaea HOM05D001406 ORTHO05D006300 0.0e+00 1579.7 1367 63.1
Atru.chr4.2868 Acer truncatum HOM05D001406 ORTHO05D006300 0.0e+00 1571.2 1360 65.2
Solyc12g099510.3 Solanum lycopersicum HOM05D001406 ORTHO05D006300 0.0e+00 1563.9 1307 64.8
Aqoxy2G02952 Aquilegia oxysepala HOM05D001406 ORTHO05D006300 0.0e+00 1562.0 1367 62.9
QL06p009350 Quercus lobata HOM05D001406 ORTHO05D006300 0.0e+00 1562.0 1065 78.2
MSTRG.3907 Avicennia marina HOM05D001406 ORTHO05D006300 0.0e+00 1559.7 1358 63.2
MBI19_g25352_MAGBIO Magnolia biondii HOM05D001406 ORTHO05D006300 0.0e+00 1548.5 1373 63.1
FAN12G0087 Fragaria x ananassa HOM05D001406 ORTHO05D006300 0.0e+00 1540.4 1233 67.3
Peaxi162Scf00646g00226 Petunia axillaris HOM05D001406 ORTHO05D006300 0.0e+00 1535.0 1355 62.1
Medtr2g436590 Medicago truncatula HOM05D001406 ORTHO05D006300 0.0e+00 1534.6 1366 62.3
ClCG06G005070 Citrullus lanatus HOM05D001406 ORTHO05D006300 0.0e+00 1529.2 1348 62.2
Actinidia14294 Actinidia chinensis HOM05D001406 ORTHO05D006300 0.0e+00 1528.8 1300 66.8
PSO210G3685 Papaver somniferum HOM05D001406 ORTHO05D006300 0.0e+00 1525.4 1377 61.6
Lj6g0019990 Lotus japonicus HOM05D001406 ORTHO05D006300 0.0e+00 1523.1 1364 62.3
Migut.G00150 Erythranthe guttata HOM05D001406 ORTHO05D006300 0.0e+00 1513.0 1329 62.0
PSO170G4998 Papaver somniferum HOM05D001406 ORTHO05D006300 0.0e+00 1513.0 1367 61.6
TPR.G26890 Trifolium pratense HOM05D001406 ORTHO05D006300 0.0e+00 1508.0 1402 60.3
HanXRQChr16g0501031 Helianthus annuus HOM05D001406 ORTHO05D006300 0.0e+00 1501.9 1359 61.5
EL10Ac3g06610 Beta vulgaris HOM05D001406 ORTHO05D006300 0.0e+00 1496.5 1368 61.9
Eucgr.C00455 Eucalyptus grandis HOM05D001406 ORTHO05D006300 0.0e+00 1492.6 1280 63.2
ECA232G4578 Erigeron canadensis HOM05D001406 ORTHO05D006300 0.0e+00 1492.2 1390 61.4
SalBow2G2741 Salvia bowleyana HOM05D001406 ORTHO05D006300 0.0e+00 1486.5 1365 60.5
Nitab4.5_0000570g0200 Nicotiana tabacum HOM05D001406 ORTHO05D006300 0.0e+00 1478.4 1357 60.7
Eucgr.C00460 Eucalyptus grandis HOM05D001406 ORTHO05D006300 0.0e+00 1475.3 1364 60.6
CARHR290420 Cardamine hirsuta HOM05D001406 ORTHO05D006300 0.0e+00 1470.7 1326 62.2
AT4G15890 Arabidopsis thaliana HOM05D001406 ORTHO05D006300 0.0e+00 1468.0 1325 62.3
PGR031G1922 Punica granatum HOM05D001406 ORTHO05D006300 0.0e+00 1467.2 1366 60.7
Sp7g14340 Schrenkiella parvula HOM05D001406 ORTHO05D006300 0.0e+00 1466.1 1327 62.5
Aa31LG10G6250 Aethionema arabicum HOM05D001406 ORTHO05D006300 0.0e+00 1460.7 1338 62.0
BraA03t14045Z Brassica rapa HOM05D001406 ORTHO05D006300 0.0e+00 1460.3 1321 62.0
BolC7t45276H Brassica oleracea HOM05D001406 ORTHO05D006300 0.0e+00 1458.7 1325 61.9
BcaC06g32972 Brassica carinata HOM05D001406 ORTHO05D006300 0.0e+00 1456.4 1325 61.4
Carub.0007s2577 Capsella rubella HOM05D001406 ORTHO05D006300 0.0e+00 1451.0 1324 61.9
Thhalv10024228m.g Eutrema salsugineum HOM05D001406 ORTHO05D006300 0.0e+00 1449.9 1333 61.6
AL7G39380 Arabidopsis lyrata HOM05D001406 ORTHO05D006300 0.0e+00 1449.5 1327 61.8
THA.LOC104821780 Tarenaya hassleriana HOM05D001406 ORTHO05D006300 0.0e+00 1446.4 1333 61.8
AUR62025017 Chenopodium quinoa HOM05D001406 ORTHO05D006300 0.0e+00 1437.9 1212 64.7
A03p49440 Brassica napus HOM05D001406 ORTHO05D006300 0.0e+00 1434.9 1321 61.3
AUR62034308 Chenopodium quinoa HOM05D001406 ORTHO05D006300 0.0e+00 1433.7 1364 59.5
BcaC06g33438 Brassica carinata HOM05D001406 ORTHO05D006300 0.0e+00 1432.2 1325 61.2
Sc13g0003410 Simmondsia chinensis HOM05D001406 ORTHO05D006300 0.0e+00 1415.2 1246 62.4
Lj6g0027272 Lotus japonicus HOM05D001406 ORTHO05D006300 0.0e+00 1414.8 1290 61.3
SGA_v2.0_scaffold67G22623 Striga asiatica HOM05D001406 ORTHO05D006300 0.0e+00 1399.4 1345 59.3
Ah.04g153610 Amaranthus hybridus HOM05D001406 ORTHO05D006300 0.0e+00 1377.8 1365 57.8
COL.COLO4_13851 Corchorus olitorius HOM05D001406 ORTHO05D006300 0.0e+00 1360.9 1357 58.1
Manes.03G196500 Manihot esculenta HOM05D001406 ORTHO05D006300 0.0e+00 1358.6 1072 67.6
BcaC08g43650 Brassica carinata HOM05D001406 ORTHO05D006300 0.0e+00 1353.6 1315 58.9
SHI00255 Sapria himalayana HOM05D001406 ORTHO05D006300 0.0e+00 1343.6 1372 56.9
Lsat_1_v5_gn_6_95741 Lactuca sativa HOM05D001406 ORTHO05D006300 0.0e+00 1336.6 1420 56.0
Prupe.1G134700 Prunus persica HOM05D001406 ORTHO05D006300 0.0e+00 1294.3 982 70.8
C06p10680 Brassica napus HOM05D001406 ORTHO05D006300 0.0e+00 1281.2 1098 63.3
BolC6t36150H Brassica oleracea HOM05D001406 ORTHO05D006300 0.0e+00 1272.7 1109 62.7
DCAR_002468 Daucus carota HOM05D001406 ORTHO05D006300 0.0e+00 1253.0 1367 52.2
Nitab4.5_0003466g0080 Nicotiana tabacum HOM05D001406 ORTHO05D006300 0.0e+00 1240.3 1057 64.0
Eucgr.C00332 Eucalyptus grandis HOM05D001406 ORTHO05D006300 0.0e+00 1202.2 1364 52.7
Lalb_Chr18g0051641 Lupinus albus HOM05D001406 ORTHO05D006300 0.0e+00 1149.4 955 64.4
HPP92_015972 Vanilla planifolia HOM05D001406 ORTHO05D006300 0.0e+00 1103.6 1208 52.4
CDE02G0109 Ceratophyllum demersum HOM05D001406 ORTHO05D006300 0.0e+00 1098.2 1349 49.4
MELO3C021323.2 Cucumis melo HOM05D001406 ORTHO05D006300 2.5e-307 1059.3 954 60.5
Os12g0548100 Oryza sativa ssp. japonica HOM05D001406 ORTHO05D006300 8.0e-306 1054.3 1357 48.4
Zm00001eb410230 Zea mays HOM05D001406 ORTHO05D006300 3.4e-304 1048.9 1354 48.0
unitig_37.g12399 Utricularia gibba HOM05D001406 ORTHO05D006300 1.5e-280 970.3 1025 52.3
CsaV3_UNG225770 Cucumis sativus L. HOM05D001406 ORTHO05D006300 1.9e-278 963.4 775 65.9
Hma1.2p1_1185F.1_g265030 Hydrangea macrophylla HOM05D001406 ORTHO05D006300 2.4e-278 963.0 765 68.4
Eucgr.C00337 Eucalyptus grandis HOM05D001406 ORTHO05D006300 7.8e-269 931.4 1171 49.4
Atru.chr4.2862 Acer truncatum HOM05D001406 ORTHO05D006300 3.2e-262 909.4 838 61.3
CsaV3_UNG044300 Cucumis sativus L. HOM05D001406 ORTHO05D006300 8.4e-255 884.8 839 58.8
Eucgr.C00258 Eucalyptus grandis HOM05D001406 ORTHO05D006300 1.9e-251 873.6 717 64.3
Medtr7g110590 Medicago truncatula HOM05D001406 ORTHO05D006300 1.6e-250 870.5 1063 51.3
AagrBONN_evm.TU.Sc2ySwM_117.1301 Anthoceros agrestis HOM05D001406 ORTHO05D006300 1.2e-240 837.8 1468 39.6
SMO144G0076 Selaginella moellendorffii HOM05D001406 ORTHO05D006300 3.2e-230 803.1 1120 45.8
Mapoly0098s0043 Marchantia polymorpha HOM05D001406 ORTHO05D006300 2.1e-213 747.3 1410 37.7
CsaV3_UNG067570 Cucumis sativus L. HOM05D001406 ORTHO05D006300 4.1e-193 679.9 498 72.9
CsaV3_UNG088690 Cucumis sativus L. HOM05D001406 ORTHO05D006300 1.5e-174 618.2 452 73.0
C07p47490 Brassica napus HOM05D001406 ORTHO05D006300 3.3e-174 617.1 619 56.7
SEGI_32620 Sequoiadendron giganteum HOM05D001406 ORTHO05D006300 1.2e-173 615.1 1070 37.6
Lalb_Chr18g0051631 Lupinus albus HOM05D001406 ORTHO05D006300 1.1e-156 558.9 403 75.4
CBR_g31398 Chara braunii HOM05D001406 ORTHO05D006300 3.9e-151 540.4 1552 29.9
MELO3C035190.2 Cucumis melo HOM05D001406 ORTHO05D006300 3.9e-143 513.8 407 69.8
QL06p009358 Quercus lobata HOM05D001406 ORTHO05D006300 2.2e-130 471.5 340 78.8
SEGI_21479 Sequoiadendron giganteum HOM05D001406 ORTHO05D006300 1.2e-107 396.0 334 66.2
CsaV3_UNG067560 Cucumis sativus L. HOM05D001406 ORTHO05D006300 9.3e-105 386.3 328 62.5
QL06p009360 Quercus lobata HOM05D001406 ORTHO05D006300 4.8e-101 374.0 273 78.8
Eucgr.C00458 Eucalyptus grandis HOM05D001406 ORTHO05D006300 4.7e-88 330.9 368 54.9
Oeu016245.1 Olea europaea HOM05D001406 ORTHO05D006300 2.8e-85 321.6 431 46.9
Cre05.g241150 Chlamydomonas reinhardtii HOM05D001406 ORTHO05D006300 1.6e-83 315.8 1250 27.0
QL06p009415 Quercus lobata HOM05D001406 ORTHO05D000006 1.6e-75 289.3 599 41.1
PRCOL_00006258 Prasinoderma coloniale HOM05D001406 ORTHO05D006300 9.8e-62 243.4 1398 25.1
unitig_37.g12400 Utricularia gibba HOM05D001406 ORTHO05D004254 3.7e-53 214.9 228 54.8
Atru.chr4.2864 Acer truncatum HOM05D001406 ORTHO05D006300 1.3e-50 206.5 155 67.7
Atru.chr4.2866 Acer truncatum HOM05D001406 ORTHO05D006300 8.1e-40 170.6 114 73.7
Atru.chr4.2865 Acer truncatum HOM05D001406 ORTHO05D006300 2.3e-39 169.1 106 83.0
AagrBONN_evm.TU.Sc2ySwM_368.2199 Anthoceros agrestis HOM05D001406 ORTHO05D006300 2.3e-31 142.5 235 37.9
Atru.chr4.2867 Acer truncatum HOM05D001406 ORTHO05D006300 2.2e-29 136.0 82 81.7
Eucgr.D00108 Eucalyptus grandis HOM05D001406 ORTHO05D006300 2.4e-28 132.5 187 48.7
HPP92_015965 Vanilla planifolia HOM05D001406 ORTHO05D006300 2.7e-27 129.0 114 60.5
CsaV3_UNG044290 Cucumis sativus L. HOM05D001406 ORTHO05D034998 1.3e-26 126.7 87 71.3
DCAR_006102 Daucus carota HOM05D001406 ORTHO05D006300 2.8e-24 119.0 115 53.9
CsaV3_UNG075590 Cucumis sativus L. HOM05D001406 ORTHO05D034998 8.1e-16 90.9 79 67.1
CsaV3_UNG075600 Cucumis sativus L. HOM05D001406 ORTHO05D006300 3.1e-15 89.0 81 58.0
CsaV3_UNG088700 Cucumis sativus L. HOM05D001406 ORTHO05D006300 3.1e-15 89.0 81 58.0
CsaV3_UNG044240 Cucumis sativus L. HOM05D003565 ORTHO05D003943 1.3e-13 83.6 67 59.7
Lsat_1_v5_gn_9_42060 Lactuca sativa HOM05D001406 ORTHO05D006300 2.3e-10 72.8 52 71.2
Medtr4g120490 Medicago truncatula HOM05D001406 ORTHO05D265975 1.1e-09 70.5 134 41.8
Sc13g0003400 Simmondsia chinensis HOM05D001406 ORTHO05D034998 1.3e-08 67.0 59 67.8
QL06p009199 Quercus lobata HOM05D001406 ORTHO05D337037 8.1e-08 64.3 89 44.9
Medtr6g046230 Medicago truncatula HOM05D000076 ORTHO05D264292 2.4e-07 62.8 89 48.3
vmacro11427 Vaccinium macrocarpon HOM05D000021 ORTHO05D000010 5.3e-07 61.6 50 60.0
PRCOL_00006547 Prasinoderma coloniale HOM05D004602 ORTHO05D005906 2.0e-06 59.7 150 28.0
Phvul.007G247800 Phaseolus vulgaris HOM05D004602 ORTHO05D005906 9.9e-06 57.4 162 27.8


User provided reference genes

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