Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.01G109700 Carya illinoinensis HOM05D004739 ORTHO05D005784 0.0e+00 1644.4 816 100.0
QL06p027729 Quercus lobata HOM05D004739 ORTHO05D005784 1.1e-289 1000.0 890 61.3
GSVIVG01031656001 Vitis vinifera HOM05D004739 ORTHO05D005784 5.9e-288 994.2 813 64.6
Duzib212G0770 Durio zibethinus HOM05D004739 ORTHO05D005784 5.2e-284 981.1 817 63.8
TAR365G0018 Trochodendron aralioides HOM05D004739 ORTHO05D005784 1.3e-274 949.9 827 61.3
Gorai.005G127900 Gossypium raimondii HOM05D004739 ORTHO05D005784 3.5e-272 941.8 811 61.8
TWI73G0948 Tripterygium wilfordii HOM05D004739 ORTHO05D005784 7.8e-272 940.6 766 63.3
Thecc.04G186700 Theobroma cacao HOM05D004739 ORTHO05D005784 1.3e-271 939.9 751 64.8
Ciclev10004261m.g Citrus clementina HOM05D004739 ORTHO05D005784 1.5e-270 936.4 809 60.1
FvH4_4g12370 Fragaria vesca HOM05D004739 ORTHO05D005784 1.6e-269 932.9 841 60.4
CANSAT78G1796 Cannabis sativa HOM05D004739 ORTHO05D005784 2.1e-269 932.6 830 59.6
FAN12G0062 Fragaria x ananassa HOM05D004739 ORTHO05D005784 4.7e-269 931.4 804 62.4
RcHm_v2.0_Chr4g0410481 Rosa chinensis HOM05D004739 ORTHO05D005784 1.8e-268 929.5 810 61.1
COL.COLO4_08079 Corchorus olitorius HOM05D004739 ORTHO05D005784 6.8e-268 927.5 854 58.2
FAN12G0551 Fragaria x ananassa HOM05D004739 ORTHO05D005784 3.7e-266 921.8 834 60.3
Potri.002G233800 Populus trichocarpa HOM05D004739 ORTHO05D005784 2.4e-265 919.1 871 58.3
Sabra02G0178500 Salix brachista HOM05D004739 ORTHO05D005784 6.0e-264 914.4 866 57.2
FAN07G0434 Fragaria x ananassa HOM05D004739 ORTHO05D005784 8.6e-263 910.6 804 61.6
Manes.05G194701 Manihot esculenta HOM05D004739 ORTHO05D005784 1.1e-262 910.2 822 60.2
CSS0046373 Camellia sinensis var. sinensis HOM05D004739 ORTHO05D005784 1.6e-261 906.4 815 60.2
Gohir.D02G113000 Gossypium hirsutum HOM05D004739 ORTHO05D005784 1.2e-256 890.2 811 59.3
Lj6A353T83 Lonicera japonica HOM05D004739 ORTHO05D005784 2.3e-255 885.9 848 57.5
MELO3C022216.2 Cucumis melo HOM05D004739 ORTHO05D005784 3.9e-255 885.2 809 58.6
CsaV3_5G040440 Cucumis sativus L. HOM05D004739 ORTHO05D005784 1.6e-253 879.8 813 57.7
Sc13g0008930 Simmondsia chinensis HOM05D004739 ORTHO05D005784 1.6e-253 879.8 846 55.3
Eucgr.H00464 Eucalyptus grandis HOM05D004739 ORTHO05D005784 1.8e-252 876.3 841 56.5
Lalb_Chr10g0092061 Lupinus albus HOM05D004739 ORTHO05D005784 9.9e-251 870.5 823 57.7
Aqoxy2G04008 Aquilegia oxysepala HOM05D004739 ORTHO05D005784 3.5e-248 862.1 815 55.2
Hma1.2p1_1286F.1_g273220 Hydrangea macrophylla HOM05D004739 ORTHO05D005784 1.0e-247 860.5 601 71.0
vmacro15619 Vaccinium macrocarpon HOM05D004739 ORTHO05D005784 1.1e-246 857.1 785 58.2
Prupe.1G176700 Prunus persica HOM05D004739 ORTHO05D005784 2.5e-246 855.9 742 62.4
HanXRQChr07g0204631 Helianthus annuus HOM05D004739 ORTHO05D005784 4.8e-245 851.7 810 55.9
ECA248G0146 Erigeron canadensis HOM05D004739 ORTHO05D005784 2.0e-243 846.3 820 55.4
Sed0003398 Sechium edule HOM05D004739 ORTHO05D005784 2.4e-241 839.3 814 57.2
THA.LOC104805833 Tarenaya hassleriana HOM05D004739 ORTHO05D005784 6.7e-239 831.2 813 55.2
Ah.07g206800 Amaranthus hybridus HOM05D004739 ORTHO05D005784 2.1e-237 826.2 831 52.9
Lj6C358T14 Lonicera japonica HOM05D004739 ORTHO05D005784 4.8e-237 825.1 745 59.2
Medtr7g022220 Medicago truncatula HOM05D004739 ORTHO05D005784 1.5e-235 820.1 820 54.8
Psat3g188160 Pisum sativum HOM05D004739 ORTHO05D005784 1.5e-235 820.1 818 54.9
arahy.Tifrunner.gnm1.ann1.F9LJYJ Arachis hypogaea HOM05D004739 ORTHO05D005784 1.4e-233 813.5 753 56.6
Lsat_1_v5_gn_1_69581 Lactuca sativa HOM05D004739 ORTHO05D005784 1.4e-233 813.5 813 55.7
Hund11729 Selenicereus undatus HOM05D004739 ORTHO05D005784 1.4e-233 813.5 836 52.4
PSO017G5363 Papaver somniferum HOM05D004739 ORTHO05D005784 3.2e-233 812.4 831 53.2
FAN22G0233 Fragaria x ananassa HOM05D004739 ORTHO05D005784 5.5e-233 811.6 804 57.5
Lj1g0022138 Lotus japonicus HOM05D004739 ORTHO05D005784 1.6e-232 810.1 842 53.2
Glyma.18G283900 Glycine max HOM05D004739 ORTHO05D005784 1.8e-231 806.6 815 54.2
Phvul.008G017600 Phaseolus vulgaris HOM05D004739 ORTHO05D005784 3.0e-231 805.8 816 53.6
SalBow3G0652 Salvia bowleyana HOM05D004739 ORTHO05D005784 6.7e-231 804.7 817 53.2
PSO675G2609 Papaver somniferum HOM05D004739 ORTHO05D005784 1.9e-230 803.1 829 52.8
Actinidia38940 Actinidia chinensis HOM05D004739 ORTHO05D005784 7.4e-230 801.2 824 54.0
AUR62021147 Chenopodium quinoa HOM05D004739 ORTHO05D005784 6.2e-229 798.1 841 50.9
DCAR_023801 Daucus carota HOM05D004739 ORTHO05D005784 1.3e-226 790.4 808 53.3
Sopen09g036290 Solanum pennellii HOM05D004739 ORTHO05D005784 1.3e-226 790.4 864 51.3
Solyc09g098370.4 Solanum lycopersicum HOM05D004739 ORTHO05D005784 6.5e-226 788.1 864 51.0
MSTRG.24599 Avicennia marina HOM05D004739 ORTHO05D005784 5.5e-225 785.0 815 53.3
Gohir.A03G095900 Gossypium hirsutum HOM05D004739 ORTHO05D005784 1.6e-224 783.5 735 58.2
Sp1g35310 Schrenkiella parvula HOM05D004739 ORTHO05D005784 2.1e-224 783.1 809 53.4
Oeu006039.1 Olea europaea HOM05D004739 ORTHO05D005784 5.1e-223 778.5 796 53.4
PGR142G4233 Punica granatum HOM05D004739 ORTHO05D005784 4.3e-222 775.4 814 53.3
ATR1145G086 Amborella trichopoda HOM05D004739 ORTHO05D005784 5.7e-222 775.0 839 50.4
Nitab4.5_0007057g0010 Nicotiana tabacum HOM05D004739 ORTHO05D005784 7.4e-222 774.6 859 51.0
Aa31LG10G5400 Aethionema arabicum HOM05D004739 ORTHO05D005784 9.0e-220 767.7 808 53.3
Carub.0001s3748 Capsella rubella HOM05D004739 ORTHO05D005784 2.6e-219 766.1 809 52.9
SGA_v2.0_scaffold550G52871 Striga asiatica HOM05D004739 ORTHO05D005784 5.9e-219 765.0 842 50.6
AL1G54960 Arabidopsis lyrata HOM05D004739 ORTHO05D005784 7.6e-219 764.6 807 53.0
arahy.Tifrunner.gnm1.ann1.WHDV72 Arachis hypogaea HOM05D004739 ORTHO05D005784 1.3e-218 763.8 753 53.9
Peaxi162Scf00286g00338 Petunia axillaris HOM05D004739 ORTHO05D005784 1.3e-218 763.8 863 49.9
AT1G48360 Arabidopsis thaliana HOM05D004739 ORTHO05D005784 2.9e-218 762.7 808 53.0
AUR62031390 Chenopodium quinoa HOM05D004739 ORTHO05D005784 1.2e-216 757.3 837 49.8
Migut.N00187 Erythranthe guttata HOM05D004739 ORTHO05D005784 2.3e-215 753.1 775 53.2
Thhalv10011221m.g Eutrema salsugineum HOM05D004739 ORTHO05D005784 5.7e-214 748.4 838 51.4
VMungo1383G1195 Vigna mungo HOM05D004739 ORTHO05D005784 9.7e-214 747.7 817 50.9
Cc03_g10760 Coffea canephora HOM05D004739 ORTHO05D005784 4.8e-213 745.3 612 60.6
A08p04770 Brassica napus HOM05D004739 ORTHO05D005784 2.2e-210 736.5 819 51.4
C08p05140 Brassica napus HOM05D004739 ORTHO05D005784 3.8e-210 735.7 821 51.0
BolC8t47324H Brassica oleracea HOM05D004739 ORTHO05D005784 9.4e-209 731.1 821 51.2
BcaC07g37141 Brassica carinata HOM05D004739 ORTHO05D005784 3.9e-207 725.7 837 50.1
Cpa.g.sc8.308 Carica papaya HOM05D004739 ORTHO05D005784 2.2e-205 719.9 824 51.1
HPP92_024268 Vanilla planifolia HOM05D004739 ORTHO05D005784 2.8e-205 719.5 816 47.4
BraA08t32506Z Brassica rapa HOM05D004739 ORTHO05D005784 8.2e-205 718.0 873 48.3
Nitab4.5_0008073g0020 Nicotiana tabacum HOM05D004739 ORTHO05D005784 2.2e-202 709.9 817 50.1
ClCG08G000320 Citrullus lanatus HOM05D004739 ORTHO05D005784 1.9e-201 706.8 543 65.7
Os06g0171800 Oryza sativa ssp. japonica HOM05D004739 ORTHO05D005784 1.2e-195 687.6 833 45.5
EL10Ac3g05589 Beta vulgaris HOM05D004739 ORTHO05D005784 7.7e-195 684.9 724 51.2
Rhsim02G0071300 Rhododendron simsii HOM05D004739 ORTHO05D005784 3.8e-194 682.6 784 51.4
Zm00001eb375390 Zea mays HOM05D004739 ORTHO05D005784 5.0e-186 655.6 822 45.1
HPP92_024254 Vanilla planifolia HOM05D004739 ORTHO05D005784 1.1e-185 654.4 817 44.4
Ca_07125_v3 Cicer arietinum L. HOM05D004739 ORTHO05D005784 1.3e-173 614.4 557 57.6
BcaB04g17436 Brassica carinata HOM05D004739 ORTHO05D005784 2.7e-163 580.1 810 44.9
Hma1.2p1_1286F.1_g273230 Hydrangea macrophylla HOM05D004739 ORTHO05D005784 2.5e-161 573.5 386 73.8
CDE02G3320 Ceratophyllum demersum HOM05D004739 ORTHO05D005784 1.0e-154 551.6 828 41.7
Pp3c5_2670 Physcomitrium patens HOM05D004739 ORTHO05D005784 1.1e-151 541.6 967 37.3
AagrBONN_evm.TU.Sc2ySwM_344.4128 Anthoceros agrestis HOM05D004739 ORTHO05D002352 2.3e-151 540.4 876 38.4
CAN.G710.49 Capsicum annuum HOM05D004739 ORTHO05D005784 4.0e-151 539.7 413 64.9
MBI11_g12232_MAGBIO Magnolia biondii HOM05D004739 ORTHO05D005784 7.5e-150 535.4 428 62.4
Mapoly0005s0042 Marchantia polymorpha HOM05D004739 ORTHO05D005784 2.3e-146 523.9 608 44.1
Atru.BG.162.p Acer truncatum HOM05D004739 ORTHO05D005784 6.0e-139 499.2 316 76.9
SMO203G0018 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 1.4e-135 488.0 818 38.5
SMO327G0008 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 3.1e-135 486.9 669 41.7
Dinv31052 Davidia involucrata HOM05D004739 ORTHO05D005784 9.3e-132 475.3 477 55.6
MD09G1250400 Malus domestica HOM05D004739 ORTHO05D005784 6.0e-131 472.6 318 74.8
CARHR037970 Cardamine hirsuta HOM05D004739 ORTHO05D005784 2.3e-130 470.7 628 45.4
SMO110G0011 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 1.4e-124 451.4 622 41.8
SMO331G0089 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 4.3e-121 439.9 582 43.1
Glyma.08G259832 Glycine max HOM05D004739 ORTHO05D005784 8.4e-117 425.6 339 62.8
SMO327G0027 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 2.1e-115 421.0 665 39.2
SEGI_11980 Sequoiadendron giganteum HOM05D004739 ORTHO05D005784 2.1e-115 421.0 424 51.9
TAR365G0620 Trochodendron aralioides HOM05D004739 ORTHO05D005784 1.1e-111 408.7 440 53.9
CSS0028447 Camellia sinensis var. sinensis HOM05D004739 ORTHO05D005784 4.5e-110 403.3 315 67.0
SMO327G0004 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 1.5e-105 388.3 669 38.3
SHI06489 Sapria himalayana HOM05D004739 ORTHO05D000023 6.3e-104 382.9 484 45.5
unitig_8.g4743 Utricularia gibba HOM05D004739 ORTHO05D003440 1.9e-100 371.3 872 32.0
Dinv31047 Davidia involucrata HOM05D004739 ORTHO05D005784 2.7e-99 367.5 243 74.5
Dinv31053 Davidia involucrata HOM05D004739 ORTHO05D005784 2.7e-99 367.5 243 74.5
MD09G1250200 Malus domestica HOM05D004739 ORTHO05D005784 3.1e-95 354.0 396 52.8
SMO110G0012 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 4.2e-92 343.6 818 32.0
SMO110G0002 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 2.7e-91 340.9 767 32.5
SMO331G0087 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 1.0e-90 339.0 339 50.7
TPR.G2930 Trifolium pratense HOM05D004739 ORTHO05D005784 3.9e-82 310.5 401 45.6
SMO331G0064 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 5.0e-69 266.9 509 36.9
TPR.G22177 Trifolium pratense HOM05D004739 ORTHO05D005784 1.9e-68 265.0 170 72.9
MD00G1163900 Malus domestica HOM05D004739 ORTHO05D005784 7.0e-63 246.5 136 85.3
CAN.G710.48 Capsicum annuum HOM05D003943 ORTHO05D004753 4.0e-58 230.7 398 37.4
SMO252G0014 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 3.1e-55 221.1 678 28.5
TPR.G2943 Trifolium pratense HOM05D004739 ORTHO05D005784 2.6e-49 201.4 172 62.2
SEGI_19061 Sequoiadendron giganteum HOM05D004739 ORTHO05D005784 3.3e-44 184.5 547 28.9
PRCOL_00003987 Prasinoderma coloniale HOM05D004739 ORTHO05D005784 1.2e-43 182.6 503 29.0
Actinidia34750 Actinidia chinensis HOM05D004739 ORTHO05D005784 3.6e-43 181.0 112 77.7
CSS0043638 Camellia sinensis var. sinensis HOM05D004739 ORTHO05D005784 4.7e-43 180.6 152 65.1
Cre16.g660350 Chlamydomonas reinhardtii HOM05D004739 ORTHO05D005784 1.1e-42 179.5 296 36.5
ClCG08G000310 Citrullus lanatus HOM05D004739 ORTHO05D005784 5.2e-42 177.2 259 44.8
CBR_g7993 Chara braunii HOM05D004739 ORTHO05D005784 7.0e-39 166.8 281 32.7
Cfa015247 Carpinus fangiana HOM05D004739 ORTHO05D005784 4.6e-30 137.5 96 72.9
Lj6P350T22 Lonicera japonica HOM05D004739 ORTHO05D005784 8.6e-29 133.3 128 55.5
FAN17G2248 Fragaria x ananassa HOM05D004739 ORTHO05D005784 4.7e-27 127.5 73 82.2
SMO331G0066 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 4.7e-27 127.5 656 25.0
Zm00001eb188730 Zea mays HOM05D004739 ORTHO05D005784 4.0e-26 124.4 86 65.1
Glyma.08G259766 Glycine max HOM05D004739 ORTHO05D005784 6.8e-26 123.6 109 56.0
Cfa022531 Carpinus fangiana HOM05D004739 ORTHO05D121730 2.6e-25 121.7 573 24.3
Lj6A353T82 Lonicera japonica HOM05D004739 ORTHO05D005784 5.8e-25 120.6 67 83.6
CSS0002286 Camellia sinensis var. sinensis HOM05D004739 ORTHO05D005784 4.9e-24 117.5 83 73.5
CBR_g39432 Chara braunii HOM05D004739 ORTHO05D005784 1.3e-21 109.4 79 60.8
CSS0015609 Camellia sinensis var. sinensis HOM05D004739 ORTHO05D005784 5.1e-21 107.5 173 43.9
SMO252G0017 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 7.1e-15 87.0 49 77.6
Cc03_g10750 Coffea canephora HOM05D004739 ORTHO05D005784 2.7e-14 85.1 94 45.7
SMO110G0004 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 5.8e-09 67.4 71 50.7


User provided reference genes

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