Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.01G026500 Carya illinoinensis HOM05D005480 ORTHO05D006735 1.8e-261 905.6 531 100.0
QL06p043724 Quercus lobata HOM05D005480 ORTHO05D006735 1.5e-194 683.3 510 83.7
CsaV3_6G042900 Cucumis sativus L. HOM05D005480 ORTHO05D006735 6.2e-169 598.2 512 72.9
MELO3C007529.2 Cucumis melo HOM05D005480 ORTHO05D006735 9.8e-167 590.9 503 74.6
Gohir.D12G090600 Gossypium hirsutum HOM05D005480 ORTHO05D006735 3.5e-164 582.4 502 73.1
Gohir.A12G068600 Gossypium hirsutum HOM05D005480 ORTHO05D006735 1.0e-163 580.9 503 74.6
Prupe.7G142300 Prunus persica HOM05D005480 ORTHO05D006735 1.1e-162 577.4 509 73.3
Cfa004218 Carpinus fangiana HOM05D005480 ORTHO05D006735 1.8e-160 570.1 395 81.8
Thecc.01G048100 Theobroma cacao HOM05D005480 ORTHO05D006735 3.1e-160 569.3 501 73.1
Eucgr.H01972 Eucalyptus grandis HOM05D005480 ORTHO05D006735 8.9e-160 567.8 510 70.6
Gorai.008G072400 Gossypium raimondii HOM05D005480 ORTHO05D006735 1.2e-159 567.4 502 72.3
Duzib187G0998 Durio zibethinus HOM05D005480 ORTHO05D006735 4.9e-158 562.0 501 73.5
TPR.G11349 Trifolium pratense HOM05D005480 ORTHO05D006735 4.9e-158 562.0 508 70.7
Dinv39906 Davidia involucrata HOM05D005480 ORTHO05D006735 5.4e-157 558.5 506 70.9
MD02G1161300 Malus domestica HOM05D005480 ORTHO05D006735 5.4e-157 558.5 523 70.0
ClCG01G016580 Citrullus lanatus HOM05D005480 ORTHO05D006735 2.7e-156 556.2 478 67.2
Sed0026694 Sechium edule HOM05D005480 ORTHO05D006735 2.7e-156 556.2 504 71.6
PGR102G0042 Punica granatum HOM05D005480 ORTHO05D006735 7.3e-154 548.1 505 70.3
RcHm_v2.0_Chr2g0103771 Rosa chinensis HOM05D005480 ORTHO05D006735 4.7e-153 545.4 433 72.7
Duzib147G0741 Durio zibethinus HOM05D005480 ORTHO05D006735 6.2e-153 545.0 501 71.5
CANSAT01G1679 Cannabis sativa HOM05D005480 ORTHO05D006735 2.0e-151 540.0 525 70.1
Lj7A20T61 Lonicera japonica HOM05D005480 ORTHO05D006735 2.0e-151 540.0 425 73.9
Glyma.01G181500 Glycine max HOM05D005480 ORTHO05D006735 1.3e-150 537.3 432 71.1
MD15G1275400 Malus domestica HOM05D005480 ORTHO05D006735 3.8e-150 535.8 507 68.0
Medtr5g018390 Medicago truncatula HOM05D005480 ORTHO05D006735 2.4e-149 533.1 431 70.5
TAR625G1062 Trochodendron aralioides HOM05D005480 ORTHO05D006735 4.6e-148 528.9 503 63.6
CSS0014684 Camellia sinensis var. sinensis HOM05D005480 ORTHO05D006735 1.3e-147 527.3 522 69.3
Lj7A18T44 Lonicera japonica HOM05D005480 ORTHO05D006735 5.1e-147 525.4 431 71.7
Lj2g0021055 Lotus japonicus HOM05D005480 ORTHO05D006735 5.1e-147 525.4 429 69.9
Potri.007G036600 Populus trichocarpa HOM05D005480 ORTHO05D006735 1.9e-146 523.5 519 69.9
CSS0005424 Camellia sinensis var. sinensis HOM05D005480 ORTHO05D006735 1.8e-144 516.9 519 69.0
Hma1.2p1_0546F.1_g176180 Hydrangea macrophylla HOM05D005480 ORTHO05D006735 1.2e-143 514.2 431 68.9
VMungo1215G2543 Vigna mungo HOM05D005480 ORTHO05D006735 2.6e-143 513.1 504 66.3
PGSC0003DMG400010074 Solanum tuberosum HOM05D005480 ORTHO05D006735 7.6e-143 511.5 431 68.2
Sopen02g034920 Solanum pennellii HOM05D005480 ORTHO05D006735 1.7e-142 510.4 431 67.7
DCAR_021432 Daucus carota HOM05D005480 ORTHO05D006735 2.9e-142 509.6 422 69.0
Manes.13G130100 Manihot esculenta HOM05D005480 ORTHO05D006735 3.8e-142 509.2 505 64.4
FAN23G2977 Fragaria x ananassa HOM05D005480 ORTHO05D006735 6.4e-142 508.4 438 66.9
Cc07_g05560 Coffea canephora HOM05D005480 ORTHO05D006735 8.4e-142 508.1 431 68.9
TAR381G0420 Trochodendron aralioides HOM05D005480 ORTHO05D006735 1.1e-141 507.7 465 72.3
Dinv26753 Davidia involucrata HOM05D005480 ORTHO05D006735 1.4e-141 507.3 407 79.9
Solyc02g090230.4 Solanum lycopersicum HOM05D005480 ORTHO05D006735 4.2e-141 505.8 431 67.3
Phvul.002G022500 Phaseolus vulgaris HOM05D005480 ORTHO05D006735 7.9e-140 501.5 494 65.8
Psat2g164160 Pisum sativum HOM05D005480 ORTHO05D006735 3.9e-139 499.2 419 69.2
FAN19G1500 Fragaria x ananassa HOM05D005480 ORTHO05D006735 8.7e-139 498.0 435 66.7
FvH4_1g14810 Fragaria vesca HOM05D005480 ORTHO05D006735 2.5e-138 496.5 435 66.4
Glyma.11G059700 Glycine max HOM05D005480 ORTHO05D006735 2.1e-137 493.4 405 76.5
Actinidia12077 Actinidia chinensis HOM05D005480 ORTHO05D006735 2.8e-137 493.0 505 68.3
FAN26G2127 Fragaria x ananassa HOM05D005480 ORTHO05D006735 2.8e-137 493.0 436 66.5
Lalb_Chr09g0322931 Lupinus albus HOM05D005480 ORTHO05D006735 2.6e-135 486.5 509 67.2
Sc03g0001260 Simmondsia chinensis HOM05D005480 ORTHO05D006735 5.8e-135 485.3 420 65.5
Ciclev10025487m.g Citrus clementina HOM05D005480 ORTHO05D006735 4.2e-133 479.2 504 66.1
Ah.02g123950 Amaranthus hybridus HOM05D005480 ORTHO05D006735 3.5e-132 476.1 431 64.5
MBI16_g19897_MAGBIO Magnolia biondii HOM05D005480 ORTHO05D006735 3.0e-131 473.0 403 67.7
MSTRG.23794 Avicennia marina HOM05D005480 ORTHO05D006735 6.7e-131 471.9 503 65.2
Rhsim02G0168000 Rhododendron simsii HOM05D005480 ORTHO05D006735 1.9e-130 470.3 406 66.3
Haze_15193 Corylus avellana HOM05D005480 ORTHO05D006735 5.6e-130 468.8 352 77.8
Aqoxy5G01417 Aquilegia oxysepala HOM05D005480 ORTHO05D006735 2.8e-129 466.5 431 62.6
Hund13586 Selenicereus undatus HOM05D005480 ORTHO05D006735 4.8e-129 465.7 431 63.6
FAN28G0426 Fragaria x ananassa HOM05D005480 ORTHO05D006735 6.2e-129 465.3 501 61.9
arahy.Tifrunner.gnm1.ann1.E9URZA Arachis hypogaea HOM05D005480 ORTHO05D006735 9.0e-128 461.5 492 66.7
Migut.H00485 Erythranthe guttata HOM05D005480 ORTHO05D006735 2.0e-127 460.3 536 61.9
COL.COLO4_11327 Corchorus olitorius HOM05D005480 ORTHO05D006735 2.6e-127 459.9 402 67.9
Nn6g32121 Nelumbo nucifera HOM05D005480 ORTHO05D006735 3.4e-127 459.5 511 62.2
THA.LOC104819823 Tarenaya hassleriana HOM05D005480 ORTHO05D006735 8.4e-126 454.9 510 61.4
Peaxi162Scf00993g00022 Petunia axillaris HOM05D005480 ORTHO05D006735 9.3e-125 451.4 399 67.2
ECA232G3160 Erigeron canadensis HOM05D005480 ORTHO05D006735 2.7e-124 449.9 452 61.5
HanXRQChr04g0123741 Helianthus annuus HOM05D005480 ORTHO05D006735 3.9e-123 446.0 519 60.1
Carub.0007s0332 Capsella rubella HOM05D005480 ORTHO05D006735 5.1e-123 445.7 515 61.4
Sp7g34650 Schrenkiella parvula HOM05D005480 ORTHO05D006735 1.9e-122 443.7 524 62.0
CDE01G0732 Ceratophyllum demersum HOM05D005480 ORTHO05D006735 3.7e-121 439.5 506 58.1
Thhalv10025060m.g Eutrema salsugineum HOM05D005480 ORTHO05D006735 2.6e-119 433.3 509 60.3
Sabra07G0032600 Salix brachista HOM05D005480 ORTHO05D006735 1.0e-118 431.4 397 65.5
SGA_v2.0_scaffold15G07231 Striga asiatica HOM05D005480 ORTHO05D006735 1.0e-118 431.4 526 58.9
ATR0733G143 Amborella trichopoda HOM05D005480 ORTHO05D006735 3.2e-117 426.4 435 59.8
PSO170G5089 Papaver somniferum HOM05D005480 ORTHO05D006735 2.1e-116 423.7 510 59.4
AL7G13910 Arabidopsis lyrata HOM05D005480 ORTHO05D006735 4.6e-116 422.5 437 60.0
Oeu003952.2 Olea europaea HOM05D005480 ORTHO05D006735 6.1e-116 422.2 669 45.9
Ca_24802_v3 Cicer arietinum L. HOM05D005480 ORTHO05D006735 7.9e-116 421.8 354 70.6
Lsat_1_v5_gn_4_179460 Lactuca sativa HOM05D005480 ORTHO05D006735 7.9e-116 421.8 519 56.8
AT4G37130 Arabidopsis thaliana HOM05D005480 ORTHO05D006735 1.0e-115 421.4 438 59.8
CAN.G836.34 Capsicum annuum HOM05D005480 ORTHO05D006735 5.1e-115 419.1 378 65.6
Aa31LG6G13860 Aethionema arabicum HOM05D005480 ORTHO05D006735 8.7e-115 418.3 332 68.4
PSO210G7251 Papaver somniferum HOM05D005480 ORTHO05D006735 1.5e-114 417.5 505 58.2
vmacro05295 Vaccinium macrocarpon HOM05D005480 ORTHO05D006735 1.6e-113 414.1 378 65.9
Nitab4.5_0001014g0070 Nicotiana tabacum HOM05D005480 ORTHO05D006735 2.2e-113 413.7 388 64.2
Nitab4.5_0000108g0300 Nicotiana tabacum HOM05D005480 ORTHO05D006735 2.4e-112 410.2 390 64.1
A01p01950 Brassica napus HOM05D005480 ORTHO05D006735 4.1e-112 409.5 528 53.0
BraA01t00184Z Brassica rapa HOM05D005480 ORTHO05D006735 1.2e-111 407.9 515 55.1
AUR62003828 Chenopodium quinoa HOM05D005480 ORTHO05D006735 7.7e-111 405.2 392 61.2
arahy.Tifrunner.gnm1.ann1.HXIH5S Arachis hypogaea HOM05D005480 ORTHO05D006735 8.5e-110 401.7 361 68.4
SHI08751 Sapria himalayana HOM05D005480 ORTHO05D006735 9.4e-109 398.3 404 59.2
unitig_899.g14972 Utricularia gibba HOM05D005480 ORTHO05D006735 1.2e-108 397.9 399 59.4
CDE02G2721 Ceratophyllum demersum HOM05D005480 ORTHO05D006735 1.8e-107 394.0 290 69.3
CARHR245380 Cardamine hirsuta HOM05D005480 ORTHO05D006735 8.8e-107 391.7 521 56.8
BcaB03g12366 Brassica carinata HOM05D005480 ORTHO05D006735 2.0e-106 390.6 521 52.2
BcaNung03510 Brassica carinata HOM05D005480 ORTHO05D006735 9.7e-106 388.3 528 53.2
SalBow1G5517 Salvia bowleyana HOM05D006685 ORTHO05D008244 1.4e-104 384.4 278 73.4
BolC3t20222H Brassica oleracea HOM05D005480 ORTHO05D006735 1.9e-101 374.0 482 53.5
AUR62001975 Chenopodium quinoa HOM05D005480 ORTHO05D006735 1.9e-101 374.0 362 62.4
GSVIVG01005079001 Vitis vinifera HOM05D005480 ORTHO05D006735 1.9e-101 374.0 310 77.1
BolC1t00204H Brassica oleracea HOM05D005480 ORTHO05D006735 7.2e-101 372.1 505 56.8
A08p22500 Brassica napus HOM05D005480 ORTHO05D006735 1.6e-100 370.9 442 54.1
BraA08t34205Z Brassica rapa HOM05D005480 ORTHO05D006735 2.7e-100 370.2 437 54.2
C01p02120 Brassica napus HOM05D005480 ORTHO05D006735 7.9e-100 368.6 509 56.8
BcaC01g00434 Brassica carinata HOM05D005480 ORTHO05D006735 3.3e-98 363.2 414 55.6
C03p79710 Brassica napus HOM05D005480 ORTHO05D006735 3.3e-98 363.2 414 55.6
Os09g0453500 Oryza sativa ssp. japonica HOM05D005480 ORTHO05D006735 3.8e-94 349.7 428 50.9
Lalb_Chr05g0213141 Lupinus albus HOM05D005480 ORTHO05D006735 4.2e-93 346.3 251 72.1
BcaB03g12364 Brassica carinata HOM05D005480 ORTHO05D006735 9.1e-88 328.6 516 47.3
Zm00001eb314700 Zea mays HOM05D005480 ORTHO05D006735 3.5e-87 326.6 432 50.0
AagrBONN_evm.TU.Sc2ySwM_117.4106 Anthoceros agrestis HOM05D005480 ORTHO05D006735 8.8e-83 312.0 342 52.0
Zm00001eb100530 Zea mays HOM05D005480 ORTHO05D006735 3.7e-81 306.6 429 47.1
SGA_v2.0_scaffold135G34951 Striga asiatica HOM05D005480 ORTHO05D006735 9.2e-72 275.4 408 51.2
Mapoly0027s0041 Marchantia polymorpha HOM05D005480 ORTHO05D006735 2.3e-67 260.8 476 40.8
Ah.03g144040 Amaranthus hybridus HOM05D005480 ORTHO05D006735 4.4e-66 256.5 228 59.6
HPP92_016040 Vanilla planifolia HOM05D005480 ORTHO05D006735 4.9e-65 253.1 203 59.1
Pp3c24_6760 Physcomitrium patens HOM05D005480 ORTHO05D006735 2.4e-64 250.8 419 42.0
SEGI_40098 Sequoiadendron giganteum HOM05D005480 ORTHO05D006735 4.1e-56 223.4 379 44.6
Cpa.g.c44085 Carica papaya HOM05D005480 ORTHO05D006735 7.0e-56 222.6 194 71.6
CBR_g66690 Chara braunii HOM05D005480 ORTHO05D006735 3.3e-53 213.8 480 36.7
Os03g0765400 Oryza sativa ssp. japonica HOM05D005480 ORTHO05D006735 2.8e-52 210.7 369 42.5
Psat5g148720 Pisum sativum HOM05D005480 ORTHO05D006735 6.0e-47 193.0 209 57.9
Mapoly0016s0112 Marchantia polymorpha HOM05D005480 ORTHO05D006735 2.0e-42 177.9 335 37.0
Sabra07G0033100 Salix brachista HOM05D005480 ORTHO05D006735 7.8e-31 139.4 206 53.4
Sabra07G0032900 Salix brachista HOM05D005480 ORTHO05D006735 1.0e-30 139.0 206 53.4
Sabra07G0033400 Salix brachista HOM05D005480 ORTHO05D006735 1.3e-30 138.7 197 55.8
HPP92_016039 Vanilla planifolia HOM05D005480 ORTHO05D006735 1.9e-24 118.2 68 82.4
Ah.03g144030 Amaranthus hybridus HOM05D005480 ORTHO05D006735 7.1e-16 89.7 84 56.0
C04p28170 Brassica napus HOM05D005480 ORTHO05D006735 1.9e-13 81.6 95 50.5
BolC4t24360H Brassica oleracea HOM05D005480 ORTHO05D006735 1.9e-13 81.6 95 50.5
BcaC02g10502 Brassica carinata HOM05D005480 ORTHO05D006735 7.4e-13 79.7 44 79.5
GSVIVG01006101001 Vitis vinifera HOM05D005480 ORTHO05D006735 5.3e-11 73.6 78 66.7
PRCOL_00002206 Prasinoderma coloniale HOM05D005480 ORTHO05D006735 3.4e-10 70.9 329 25.2
C04p33290 Brassica napus HOM05D005480 ORTHO05D006735 7.6e-10 69.7 109 43.1
Cre16.g685217 Chlamydomonas reinhardtii HOM05D005480 ORTHO05D006735 6.5e-09 66.6 411 24.3
BolC4t24894H Brassica oleracea HOM05D005480 ORTHO05D006735 1.1e-08 65.9 96 45.8


User provided reference genes

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