Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa027224 Carpinus fangiana HOM05D002899 ORTHO05D003850 0.0e+00 1471.4 746 100.0
MBI02_g25679_MAGBIO Magnolia biondii HOM05D002899 ORTHO05D003850 8.7e-44 183.0 595 28.2
COL.COLO4_33467 Corchorus olitorius HOM05D002899 ORTHO05D003850 2.5e-43 181.4 594 26.1
Atru.chr12.1814 Acer truncatum HOM05D002899 ORTHO05D003850 2.1e-42 178.3 723 27.0
Sed0007587 Sechium edule HOM05D002899 ORTHO05D003850 2.1e-42 178.3 709 26.1
ClCG02G007900 Citrullus lanatus HOM05D002899 ORTHO05D003850 3.7e-42 177.6 711 25.6
Prupe.5G048700 Prunus persica HOM05D002899 ORTHO05D003850 4.8e-42 177.2 667 25.9
CARHR137380 Cardamine hirsuta HOM05D002899 ORTHO05D003850 6.2e-42 176.8 724 25.6
Nn3g21896 Nelumbo nucifera HOM05D002899 ORTHO05D003850 6.2e-42 176.8 717 25.8
AUR62024879 Chenopodium quinoa HOM05D002899 ORTHO05D003850 1.1e-41 176.0 686 25.7
MD15G1445100 Malus domestica HOM05D002899 ORTHO05D003850 1.4e-41 175.6 666 27.2
Sc11g0002190 Simmondsia chinensis HOM05D002899 ORTHO05D003850 2.4e-41 174.9 664 25.2
FAN18G3509 Fragaria x ananassa HOM05D002899 ORTHO05D003850 3.1e-41 174.5 700 26.3
RcHm_v2.0_Chr7g0218481 Rosa chinensis HOM05D002899 ORTHO05D003850 3.1e-41 174.5 666 26.6
FvH4_5g27320 Fragaria vesca HOM05D002899 ORTHO05D003850 4.0e-41 174.1 700 26.3
MD08G1250100 Malus domestica HOM05D002899 ORTHO05D003850 4.0e-41 174.1 669 26.3
Atru.chr6.914 Acer truncatum HOM05D002899 ORTHO05D003850 5.3e-41 173.7 730 25.6
MELO3C024757.2 Cucumis melo HOM05D002899 ORTHO05D003850 5.3e-41 173.7 704 25.9
SMO165G0034 Selaginella moellendorffii HOM05D002899 ORTHO05D003850 5.3e-41 173.7 668 26.0
SEGI_23967 Sequoiadendron giganteum HOM05D002899 ORTHO05D003850 5.3e-41 173.7 591 27.4
GSVIVG01024262001 Vitis vinifera HOM05D002899 ORTHO05D003850 1.2e-40 172.6 578 26.1
AT1G17070 Arabidopsis thaliana HOM05D002899 ORTHO05D003850 1.5e-40 172.2 721 24.1
AUR62030668 Chenopodium quinoa HOM05D002899 ORTHO05D003850 1.5e-40 172.2 686 25.2
FAN08G1317 Fragaria x ananassa HOM05D002899 ORTHO05D003850 1.5e-40 172.2 689 26.1
PGR142G0302 Punica granatum HOM05D002899 ORTHO05D003850 1.5e-40 172.2 709 25.5
Gohir.A11G221200 Gossypium hirsutum HOM05D002899 ORTHO05D003850 2.0e-40 171.8 660 26.4
THA.LOC104823791 Tarenaya hassleriana HOM05D002899 ORTHO05D003850 2.0e-40 171.8 694 25.2
CiPaw.05G210800 Carya illinoinensis HOM05D002899 ORTHO05D003850 2.6e-40 171.4 708 26.0
Ciclev10030682m.g Citrus clementina HOM05D002899 ORTHO05D003850 2.6e-40 171.4 713 25.7
Ah.12g063970 Amaranthus hybridus HOM05D002899 ORTHO05D003850 4.5e-40 170.6 669 25.9
AL1G29240 Arabidopsis lyrata HOM05D002899 ORTHO05D003850 4.5e-40 170.6 723 24.5
CsaV3_2G035840 Cucumis sativus L. HOM05D002899 ORTHO05D003850 4.5e-40 170.6 713 25.7
Cfa016110 Carpinus fangiana HOM05D002899 ORTHO05D003850 5.8e-40 170.2 671 26.2
Gohir.D11G234700 Gossypium hirsutum HOM05D002899 ORTHO05D003850 5.8e-40 170.2 660 26.4
Gorai.007G247300 Gossypium raimondii HOM05D002899 ORTHO05D003850 5.8e-40 170.2 660 26.4
Prupe.1G587200 Prunus persica HOM05D002899 ORTHO05D003850 9.9e-40 169.5 661 26.8
THA.LOC104805726 Tarenaya hassleriana HOM05D002899 ORTHO05D003850 9.9e-40 169.5 732 25.0
PSO384G0661 Papaver somniferum HOM05D002899 ORTHO05D003850 1.3e-39 169.1 706 27.2
TAR375G0529 Trochodendron aralioides HOM05D002899 ORTHO05D003850 1.3e-39 169.1 665 26.9
CARHR017600 Cardamine hirsuta HOM05D002899 ORTHO05D003850 1.7e-39 168.7 703 24.2
Glyma.02G073100 Glycine max HOM05D002899 ORTHO05D003850 2.2e-39 168.3 714 24.8
Sc06g0010130 Simmondsia chinensis HOM05D002899 ORTHO05D003850 2.2e-39 168.3 664 24.8
Hma1.2p1_1059F.1_g253030 Hydrangea macrophylla HOM05D002899 ORTHO05D003850 2.9e-39 167.9 587 26.9
PSO339G6595 Papaver somniferum HOM05D002899 ORTHO05D003850 2.9e-39 167.9 706 26.8
DCAR_022992 Daucus carota HOM05D002899 ORTHO05D003850 3.8e-39 167.5 678 25.1
Eucgr.G00845 Eucalyptus grandis HOM05D002899 ORTHO05D003850 3.8e-39 167.5 713 24.8
Aa31LG11G5630 Aethionema arabicum HOM05D002899 ORTHO05D003850 1.4e-38 165.6 637 24.5
Duzib128G1532 Durio zibethinus HOM05D002899 ORTHO05D003850 1.4e-38 165.6 662 25.8
A09p60630 Brassica napus HOM05D002899 ORTHO05D003850 1.9e-38 165.2 695 23.6
AT2G42330 Arabidopsis thaliana HOM05D002899 ORTHO05D003850 2.4e-38 164.9 719 24.6
C08p44090 Brassica napus HOM05D002899 ORTHO05D003850 2.4e-38 164.9 691 24.0
Lalb_Chr16g0385381 Lupinus albus HOM05D002899 ORTHO05D003850 2.4e-38 164.9 621 25.9
Sabra19G0053900 Salix brachista HOM05D002899 ORTHO05D003850 2.4e-38 164.9 679 25.3
Haze_00347 Corylus avellana HOM05D002899 ORTHO05D003850 3.2e-38 164.5 677 25.7
Rhsim06G0232100 Rhododendron simsii HOM05D002899 ORTHO05D003850 3.2e-38 164.5 692 26.2
Thecc.05G227100 Theobroma cacao HOM05D002899 ORTHO05D003850 3.2e-38 164.5 661 25.6
Thhalv10006789m.g Eutrema salsugineum HOM05D002899 ORTHO05D003850 5.5e-38 163.7 712 23.9
Mapoly0121s0014 Marchantia polymorpha HOM05D002899 ORTHO05D003850 5.5e-38 163.7 696 25.4
AagrBONN_evm.TU.Sc2ySwM_340.341 Anthoceros agrestis HOM05D002899 ORTHO05D003850 7.1e-38 163.3 591 26.9
CDE05G1238 Ceratophyllum demersum HOM05D002899 ORTHO05D003850 9.3e-38 162.9 729 25.2
Lalb_Chr09g0328871 Lupinus albus HOM05D002899 ORTHO05D003850 9.3e-38 162.9 714 24.9
Sed0003802 Sechium edule HOM05D002899 ORTHO05D003850 9.3e-38 162.9 712 25.4
BolC8t51957H Brassica oleracea HOM05D002899 ORTHO05D003850 1.6e-37 162.2 691 23.7
Carub.0001s1679 Capsella rubella HOM05D002899 ORTHO05D003850 1.6e-37 162.2 683 24.3
ATR1098G071 Amborella trichopoda HOM05D002899 ORTHO05D003850 2.1e-37 161.8 594 26.8
EL10Ac2g02592 Beta vulgaris HOM05D002899 ORTHO05D003850 2.1e-37 161.8 697 25.5
Mapoly0085s0035 Marchantia polymorpha HOM05D002899 ORTHO05D003850 2.1e-37 161.8 615 25.5
Manes.09G130600 Manihot esculenta HOM05D002899 ORTHO05D003850 3.5e-37 161.0 695 25.0
Phvul.004G082100 Phaseolus vulgaris HOM05D002899 ORTHO05D003850 3.5e-37 161.0 664 25.6
arahy.Tifrunner.gnm1.ann1.T623PT Arachis hypogaea HOM05D002899 ORTHO05D003850 4.6e-37 160.6 699 24.9
TPR.G6614 Trifolium pratense HOM05D002899 ORTHO05D003850 6.0e-37 160.2 714 25.2
Aqoxy2G00924 Aquilegia oxysepala HOM05D002899 ORTHO05D003850 1.0e-36 159.5 721 24.5
CBR_g50354 Chara braunii HOM05D002899 ORTHO05D003850 1.3e-36 159.1 642 25.5
Actinidia08787 Actinidia chinensis HOM05D002899 ORTHO05D003850 2.3e-36 158.3 673 26.0
Oeu028990.1 Olea europaea HOM05D002899 ORTHO05D003850 2.3e-36 158.3 719 24.8
BcaB02g06683 Brassica carinata HOM05D002899 ORTHO05D003850 3.0e-36 157.9 601 24.6
CSS0044416 Camellia sinensis var. sinensis HOM05D002899 ORTHO05D003850 3.9e-36 157.5 675 25.5
Sp1g15190 Schrenkiella parvula HOM05D002899 ORTHO05D003850 3.9e-36 157.5 677 23.0
Potri.013G076000 Populus trichocarpa HOM05D002899 ORTHO05D003850 5.1e-36 157.1 667 24.9
SHI02598 Sapria himalayana HOM05D002899 ORTHO05D003850 5.1e-36 157.1 702 25.2
ECA247G1085 Erigeron canadensis HOM05D002899 ORTHO05D003850 6.7e-36 156.8 668 25.7
Peaxi162Scf01026g00001 Petunia axillaris HOM05D002899 ORTHO05D003850 8.7e-36 156.4 676 25.9
MSTRG.8559 Avicennia marina HOM05D002899 ORTHO05D003850 1.1e-35 156.0 710 24.4
Glyma.16G154400 Glycine max HOM05D002899 ORTHO05D003850 1.5e-35 155.6 662 24.6
HanXRQChr10g0291501 Helianthus annuus HOM05D002899 ORTHO05D003850 1.5e-35 155.6 616 24.2
Pp3c19_6430 Physcomitrium patens HOM05D002899 ORTHO05D003850 1.5e-35 155.6 678 25.1
AL4G40710 Arabidopsis lyrata HOM05D002899 ORTHO05D003850 1.9e-35 155.2 719 24.1
Os12g0615800 Oryza sativa ssp. japonica HOM05D002899 ORTHO05D003850 2.5e-35 154.8 607 27.3
Sabra13G0065200 Salix brachista HOM05D002899 ORTHO05D003850 2.5e-35 154.8 696 24.3
BcaC07g41394 Brassica carinata HOM05D002899 ORTHO05D003850 4.3e-35 154.1 690 23.9
BraA09t41433Z Brassica rapa HOM05D002899 ORTHO05D003850 4.3e-35 154.1 678 23.3
Migut.F00929 Erythranthe guttata HOM05D002899 ORTHO05D003850 5.6e-35 153.7 667 25.0
Psat4g207720 Pisum sativum HOM05D002899 ORTHO05D003850 7.4e-35 153.3 714 23.8
Potri.019G043200 Populus trichocarpa HOM05D002899 ORTHO05D003850 7.4e-35 153.3 665 24.8
VMungo0464G0921 Vigna mungo HOM05D002899 ORTHO05D003850 9.6e-35 152.9 375 30.1
Ca_23166_v3 Cicer arietinum L. HOM05D002899 ORTHO05D003850 1.3e-34 152.5 666 25.1
Ah.12g064150 Amaranthus hybridus HOM05D002899 ORTHO05D003850 2.8e-34 151.4 594 25.4
unitig_21.g20691 Utricularia gibba HOM05D002899 ORTHO05D003850 6.2e-34 150.2 719 23.8
C05p15450 Brassica napus HOM05D002899 ORTHO05D003850 8.2e-34 149.8 462 26.8
Zm00001eb135930 Zea mays HOM05D002899 ORTHO05D003850 8.2e-34 149.8 734 26.4
CAN.G492.37 Capsicum annuum HOM05D002899 ORTHO05D003850 1.1e-33 149.4 676 24.9
Medtr8g010350 Medicago truncatula HOM05D002899 ORTHO05D003850 1.1e-33 149.4 722 24.4
SGA_v2.0_scaffold39G15236 Striga asiatica HOM05D002899 ORTHO05D003850 1.4e-33 149.1 665 25.0
Aqoxy6G01663 Aquilegia oxysepala HOM05D002899 ORTHO05D003850 1.8e-33 148.7 373 28.4
MSTRG.22435 Avicennia marina HOM05D002899 ORTHO05D003850 2.4e-33 148.3 591 25.0
Lj5P331T27 Lonicera japonica HOM05D002899 ORTHO05D003850 2.4e-33 148.3 708 25.4
Lj9C24T10 Lonicera japonica HOM05D002899 ORTHO05D003850 3.1e-33 147.9 705 25.7
Lju926C12T4 Lonicera japonica HOM05D002899 ORTHO05D003850 3.1e-33 147.9 694 26.1
Pp3c22_1760 Physcomitrium patens HOM05D002899 ORTHO05D003850 4.0e-33 147.5 677 24.2
Lj1g0022689 Lotus japonicus HOM05D002899 ORTHO05D003850 5.3e-33 147.1 379 29.3
FAN04G0489 Fragaria x ananassa HOM05D002899 ORTHO05D003850 9.0e-33 146.4 673 25.1
Lsat_1_v5_gn_9_37520 Lactuca sativa HOM05D002899 ORTHO05D003850 1.2e-32 146.0 601 26.3
Cc05_g11170 Coffea canephora HOM05D002899 ORTHO05D003850 1.5e-32 145.6 671 24.4
HanXRQChr15g0463941 Helianthus annuus HOM05D002899 ORTHO05D003850 3.4e-32 144.4 696 24.6
Sopen10g001950 Solanum pennellii HOM05D002899 ORTHO05D003850 3.4e-32 144.4 680 24.9
PGSC0003DMG400014409 Solanum tuberosum HOM05D002899 ORTHO05D003850 4.5e-32 144.1 680 25.1
COL.COLO4_32217 Corchorus olitorius HOM05D002899 ORTHO05D003850 5.8e-32 143.7 577 23.7
Lsat_1_v5_gn_9_37500 Lactuca sativa HOM05D002899 ORTHO05D003850 1.7e-31 142.1 661 25.1
Solyc10g005990.4 Solanum lycopersicum HOM05D002899 ORTHO05D003850 2.2e-31 141.7 680 24.7
TWI38G1169 Tripterygium wilfordii HOM05D002899 ORTHO05D003850 8.4e-31 139.8 594 24.7
Oeu027900.2 Olea europaea HOM05D002899 ORTHO05D003850 1.4e-30 139.0 661 23.6
TPR.G2005 Trifolium pratense HOM05D002899 ORTHO05D003850 1.9e-30 138.7 269 32.0
BcaC07g41444 Brassica carinata HOM05D002899 ORTHO05D003850 2.5e-30 138.3 790 22.0
Lj9P219T21 Lonicera japonica HOM05D002899 ORTHO05D003850 5.5e-30 137.1 559 25.6
CDE02G0573 Ceratophyllum demersum HOM05D002899 ORTHO05D003850 1.2e-29 136.0 427 26.7
AUR62014872 Chenopodium quinoa HOM05D002899 ORTHO05D003850 6.0e-29 133.7 693 23.4
Gorai.011G214400 Gossypium raimondii HOM05D002899 ORTHO05D003850 2.3e-28 131.7 581 23.8
Rhsim03G0225400 Rhododendron simsii HOM05D002899 ORTHO05D003850 2.3e-28 131.7 671 24.4
Medtr7g070290 Medicago truncatula HOM05D002899 ORTHO05D003850 8.7e-28 129.8 377 27.1
RcHm_v2.0_Chr6g0293801 Rosa chinensis HOM05D002899 ORTHO05D003850 8.7e-28 129.8 247 31.6
TPR.G9789 Trifolium pratense HOM05D002899 ORTHO05D003850 8.7e-28 129.8 378 28.3
QL03p062749 Quercus lobata HOM05D002899 ORTHO05D003850 1.5e-27 129.0 655 23.7
HPP92_017275 Vanilla planifolia HOM05D002899 ORTHO05D003850 1.9e-27 128.6 375 27.5
FAN24G1302 Fragaria x ananassa HOM05D002899 ORTHO05D003850 3.3e-27 127.9 302 27.2
ECA247G0541 Erigeron canadensis HOM05D002899 ORTHO05D003850 4.3e-27 127.5 604 23.3
Cre07.g325713 Chlamydomonas reinhardtii HOM05D002899 ORTHO05D003850 9.7e-27 126.3 614 23.9
arahy.Tifrunner.gnm1.ann1.VWPR3S Arachis hypogaea HOM05D002899 ORTHO05D003850 1.6e-26 125.6 239 32.2
Gohir.D10G191600 Gossypium hirsutum HOM05D002899 ORTHO05D003850 1.6e-26 125.6 580 23.3
Lj9C25T5 Lonicera japonica HOM05D002899 ORTHO05D003850 6.3e-26 123.6 377 27.6
FAN27G1849 Fragaria x ananassa HOM05D002899 ORTHO05D003850 3.1e-25 121.3 302 28.8
DCAR_011062 Daucus carota HOM05D002899 ORTHO05D003850 4.1e-25 120.9 330 27.0
Cc07_g20660 Coffea canephora HOM05D002899 ORTHO05D003850 6.9e-25 120.2 473 24.7
BcaC05g25671 Brassica carinata HOM05D002899 ORTHO05D003850 1.2e-24 119.4 585 22.6
BolC5t30253H Brassica oleracea HOM05D002899 ORTHO05D003850 5.9e-24 117.1 260 27.3
Ciclev10018077m.g Citrus clementina HOM05D002899 ORTHO05D003850 1.0e-23 116.3 257 27.6
Dinv04697 Davidia involucrata HOM05D002899 ORTHO05D003850 1.0e-23 116.3 324 27.8
Peaxi162Scf00017g01725 Petunia axillaris HOM05D002899 ORTHO05D003850 6.5e-23 113.6 666 23.7
Sc09g0008540 Simmondsia chinensis HOM05D002899 ORTHO05D003850 2.5e-22 111.7 299 28.1
Dinv36250 Davidia involucrata HOM05D002899 ORTHO05D003850 3.0e-20 104.8 369 26.3
PRCOL_00003671 Prasinoderma coloniale HOM05D002899 ORTHO05D003850 6.7e-20 103.6 628 26.4
TAR633G0361 Trochodendron aralioides HOM05D002899 ORTHO05D003850 3.3e-19 101.3 413 27.1
TPR.G29541 Trifolium pratense HOM05D002899 ORTHO05D003850 6.3e-18 97.1 254 28.3
PGR031G2485 Punica granatum HOM05D002899 ORTHO05D003850 2.0e-16 92.0 578 22.5
Nitab4.5_0009225g0010 Nicotiana tabacum HOM05D002899 ORTHO05D003850 1.3e-15 89.4 396 23.7
Zm00001eb426490 Zea mays HOM05D002899 ORTHO05D003850 1.1e-14 86.3 338 23.4
arahy.Tifrunner.gnm1.ann1.S0X35P Arachis hypogaea HOM05D002899 ORTHO05D003850 1.2e-13 82.8 153 34.0
QL03p066723 Quercus lobata HOM05D002899 ORTHO05D003850 4.6e-13 80.9 311 24.1
arahy.Tifrunner.gnm1.ann1.2Q8IWK Arachis hypogaea HOM05D002899 ORTHO05D003850 6.1e-13 80.5 213 29.6
Glyma.18G031866 Glycine max HOM05D002899 ORTHO05D027421 1.5e-11 75.9 100 38.0
MCO06G176 Micromonas commoda HOM05D002899 ORTHO05D003850 3.1e-09 68.2 650 22.8
AUR62031081 Chenopodium quinoa HOM05D002899 ORTHO05D003850 4.1e-09 67.8 239 24.3
DCAR_009599 Daucus carota HOM05D002899 ORTHO05D003850 4.1e-09 67.8 107 35.5
FAN20G1914 Fragaria x ananassa HOM05D002899 ORTHO05D003850 6.9e-09 67.0 158 29.7
Cpa.g.sc43.153 Carica papaya HOM05D002899 ORTHO05D003850 1.2e-08 66.2 170 27.1
QL03p062784 Quercus lobata HOM05D002899 ORTHO05D003850 2.6e-08 65.1 311 22.8
COL.COLO4_09508 Corchorus olitorius HOM05D002899 ORTHO05D003850 1.3e-07 62.8 223 26.0
AUR62031080 Chenopodium quinoa HOM05D002899 ORTHO05D003850 3.8e-07 61.2 167 28.1
Aqoxy6G01674 Aquilegia oxysepala HOM05D002899 ORTHO05D003850 5.0e-07 60.8 178 25.8
Ciclev10031700m.g Citrus clementina HOM05D002899 ORTHO05D003850 6.5e-07 60.5 222 22.5
Aqoxy1G02234 Aquilegia oxysepala HOM05D002899 ORTHO05D003850 1.4e-06 59.3 98 32.7
HanXRQChr12g0357011 Helianthus annuus HOM05D004574 ORTHO05D005612 9.4e-06 56.6 68 50.0
HPP92_017274 Vanilla planifolia HOM05D002899 ORTHO05D003850 9.4e-06 56.6 154 29.2


User provided reference genes

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