Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa027112 Carpinus fangiana HOM05D003723 ORTHO05D004306 0.0e+00 1889.8 970 100.0
MCO10G249 Micromonas commoda HOM05D003723 ORTHO05D004306 5.2e-41 174.1 388 32.0
Mapoly0027s0127 Marchantia polymorpha HOM05D003723 ORTHO05D004306 7.8e-37 160.2 523 26.4
MSTRG.24381 Avicennia marina HOM05D003723 ORTHO05D004306 1.0e-36 159.8 680 25.4
GSVIVG01009321001 Vitis vinifera HOM05D003723 ORTHO05D004306 1.0e-36 159.8 619 25.5
CDE07G0463 Ceratophyllum demersum HOM05D003723 ORTHO05D004306 3.0e-36 158.3 654 25.4
SGA_v2.0_scaffold28G11839 Striga asiatica HOM05D003723 ORTHO05D004306 3.0e-36 158.3 675 26.1
Eucgr.F02239 Eucalyptus grandis HOM05D003723 ORTHO05D004306 5.1e-36 157.5 661 24.7
Pp3c22_14490 Physcomitrium patens HOM05D003723 ORTHO05D004306 6.6e-36 157.1 376 30.6
AagrBONN_evm.TU.Sc2ySwM_344.864 Anthoceros agrestis HOM05D003723 ORTHO05D004306 1.5e-35 156.0 378 32.5
Pp3c19_13580 Physcomitrium patens HOM05D003723 ORTHO05D004306 1.5e-35 156.0 377 31.3
Zm00001eb056350 Zea mays HOM05D003723 ORTHO05D004306 1.5e-35 156.0 663 26.1
CANSAT25G0987 Cannabis sativa HOM05D003723 ORTHO05D004306 1.9e-35 155.6 651 24.1
Lj5g0007294 Lotus japonicus HOM05D003723 ORTHO05D004306 2.5e-35 155.2 661 25.0
PGSC0003DMG400011543 Solanum tuberosum HOM05D003723 ORTHO05D004306 3.3e-35 154.8 655 24.4
Nitab4.5_0009040g0020 Nicotiana tabacum HOM05D003723 ORTHO05D004306 4.3e-35 154.5 590 24.4
arahy.Tifrunner.gnm1.ann1.82WHW6 Arachis hypogaea HOM05D003723 ORTHO05D004306 5.6e-35 154.1 668 25.3
Nitab4.5_0002314g0030 Nicotiana tabacum HOM05D003723 ORTHO05D004306 7.3e-35 153.7 660 24.1
Solyc12g088290.2 Solanum lycopersicum HOM05D003723 ORTHO05D004306 7.3e-35 153.7 655 24.1
AL6G41310 Arabidopsis lyrata HOM05D003723 ORTHO05D004306 2.1e-34 152.1 655 25.5
Lj4A757T32 Lonicera japonica HOM05D003723 ORTHO05D004306 3.6e-34 151.4 667 24.9
Nitab4.5_0000497g0070 Nicotiana tabacum HOM05D003723 ORTHO05D004306 3.6e-34 151.4 669 24.2
Potri.014G014900 Populus trichocarpa HOM05D003723 ORTHO05D004306 3.6e-34 151.4 632 25.0
CARHR287080 Cardamine hirsuta HOM05D003723 ORTHO05D004306 4.8e-34 151.0 645 25.3
Sabra14G0008900 Salix brachista HOM05D003723 ORTHO05D004306 4.8e-34 151.0 668 24.7
CSS0046104 Camellia sinensis var. sinensis HOM05D003723 ORTHO05D004306 6.2e-34 150.6 666 24.0
CSS0010741 Camellia sinensis var. sinensis HOM05D003723 ORTHO05D004306 8.1e-34 150.2 666 24.3
Manes.02G183600 Manihot esculenta HOM05D003723 ORTHO05D004306 8.1e-34 150.2 663 24.6
PSO541G5768 Papaver somniferum HOM05D003723 ORTHO05D004306 3.1e-33 148.3 650 24.8
RcHm_v2.0_Chr6g0309831 Rosa chinensis HOM05D003723 ORTHO05D004306 3.1e-33 148.3 749 24.0
Zm00001eb215430 Zea mays HOM05D003723 ORTHO05D004306 3.1e-33 148.3 663 25.6
FAN15G1506 Fragaria x ananassa HOM05D003723 ORTHO05D004306 4.0e-33 147.9 670 25.5
Os03g0735100 Oryza sativa ssp. japonica HOM05D003723 ORTHO05D004306 4.0e-33 147.9 666 25.2
Peaxi162Scf00081g02729 Petunia axillaris HOM05D003723 ORTHO05D004306 4.0e-33 147.9 616 23.9
FvH4_2g32880 Fragaria vesca HOM05D003723 ORTHO05D004306 6.9e-33 147.1 670 25.1
A03p27910 Brassica napus HOM05D003723 ORTHO05D004306 9.0e-33 146.7 560 24.5
PGSC0003DMG401010623 Solanum tuberosum HOM05D003723 ORTHO05D004306 9.0e-33 146.7 657 24.0
BraA03t12004Z Brassica rapa HOM05D003723 ORTHO05D004306 1.2e-32 146.4 560 24.6
FAN20G3047 Fragaria x ananassa HOM05D003723 ORTHO05D004306 1.2e-32 146.4 670 25.2
Manes.18G095200 Manihot esculenta HOM05D003723 ORTHO05D004306 1.2e-32 146.4 657 24.5
FAN24G1723 Fragaria x ananassa HOM05D003723 ORTHO05D004306 1.5e-32 146.0 666 24.9
Sopen12g030290 Solanum pennellii HOM05D003723 ORTHO05D004306 1.5e-32 146.0 585 24.3
vmacro16900 Vaccinium macrocarpon HOM05D003723 ORTHO05D004306 2.0e-32 145.6 593 24.1
SMO367G0860 Selaginella moellendorffii HOM05D003723 ORTHO05D004306 3.4e-32 144.8 364 31.3
Solyc04g077680.3 Solanum lycopersicum HOM05D003723 ORTHO05D004306 3.4e-32 144.8 657 24.4
TAR628G0363 Trochodendron aralioides HOM05D003723 ORTHO05D004306 3.4e-32 144.8 666 23.4
arahy.Tifrunner.gnm1.ann1.YU9IEB Arachis hypogaea HOM05D003723 ORTHO05D004306 4.5e-32 144.4 667 24.7
Sopen04g031320 Solanum pennellii HOM05D003723 ORTHO05D004306 5.8e-32 144.1 657 24.2
Cfa013762 Carpinus fangiana HOM05D003723 ORTHO05D004306 9.9e-32 143.3 668 24.0
Lj4C72T17 Lonicera japonica HOM05D003723 ORTHO05D004306 9.9e-32 143.3 664 23.8
QL93p0154_0009 Quercus lobata HOM05D003723 ORTHO05D004306 1.3e-31 142.9 666 24.2
Carub.0006s2652 Capsella rubella HOM05D003723 ORTHO05D004306 1.7e-31 142.5 662 24.8
Potri.002G117500 Populus trichocarpa HOM05D003723 ORTHO05D004306 1.7e-31 142.5 634 24.1
QL12p038269 Quercus lobata HOM05D003723 ORTHO05D004306 1.7e-31 142.5 666 24.2
ATR0739G177 Amborella trichopoda HOM05D003723 ORTHO05D004306 2.2e-31 142.1 673 24.2
Cpa.g.sc142.42 Carica papaya HOM05D003723 ORTHO05D004306 2.2e-31 142.1 665 23.3
FAN27G2988 Fragaria x ananassa HOM05D003723 ORTHO05D004306 2.2e-31 142.1 636 25.5
Aa31LG7G10210 Aethionema arabicum HOM05D003723 ORTHO05D004306 3.8e-31 141.4 651 24.1
AT4G07410 Arabidopsis thaliana HOM05D003723 ORTHO05D004306 3.8e-31 141.4 657 24.7
Cc10_g05060 Coffea canephora HOM05D003723 ORTHO05D004306 3.8e-31 141.4 660 24.7
Lalb_Chr14g0368121 Lupinus albus HOM05D003723 ORTHO05D004306 3.8e-31 141.4 603 23.9
BcaC01g04785 Brassica carinata HOM05D003723 ORTHO05D004306 6.4e-31 140.6 563 24.2
CBR_g57871 Chara braunii HOM05D003723 ORTHO05D004306 8.4e-31 140.2 404 28.0
PGR031G2627 Punica granatum HOM05D003723 ORTHO05D004306 8.4e-31 140.2 655 23.5
C03p33700 Brassica napus HOM05D003723 ORTHO05D004306 1.4e-30 139.4 563 24.2
BolC3t15689H Brassica oleracea HOM05D003723 ORTHO05D004306 1.4e-30 139.4 563 24.2
Sabra02G0092000 Salix brachista HOM05D003723 ORTHO05D004306 1.4e-30 139.4 670 23.0
VMungo0647G0070 Vigna mungo HOM05D003723 ORTHO05D004306 1.4e-30 139.4 669 24.4
Ah.05g167030 Amaranthus hybridus HOM05D003723 ORTHO05D004306 1.9e-30 139.0 629 23.5
BcaC05g26567 Brassica carinata HOM05D003723 ORTHO05D004306 2.4e-30 138.7 364 29.4
THA.LOC104824968 Tarenaya hassleriana HOM05D003723 ORTHO05D004306 2.4e-30 138.7 658 24.3
PSO017G5808 Papaver somniferum HOM05D003723 ORTHO05D004306 3.2e-30 138.3 652 24.2
A09p38510 Brassica napus HOM05D003723 ORTHO05D004306 7.1e-30 137.1 365 29.0
BraA09t39357Z Brassica rapa HOM05D003723 ORTHO05D004306 7.1e-30 137.1 365 29.0
HanXRQChr10g0292141 Helianthus annuus HOM05D003723 ORTHO05D004306 7.1e-30 137.1 368 29.3
HPP92_003353 Vanilla planifolia HOM05D003723 ORTHO05D004306 7.1e-30 137.1 663 24.4
Aqoxy3G00456 Aquilegia oxysepala HOM05D003723 ORTHO05D004306 9.3e-30 136.7 598 23.2
BcaC05g26751 Brassica carinata HOM05D003723 ORTHO05D004306 9.3e-30 136.7 358 28.8
BolC5t31333H Brassica oleracea HOM05D003723 ORTHO05D004306 9.3e-30 136.7 364 28.3
A08p26240 Brassica napus HOM05D003723 ORTHO05D004306 1.6e-29 136.0 643 23.6
C05p26190 Brassica napus HOM05D003723 ORTHO05D004306 1.6e-29 136.0 364 28.0
Gorai.011G126100 Gossypium raimondii HOM05D003723 ORTHO05D004306 1.6e-29 136.0 671 24.6
Phvul.001G028900 Phaseolus vulgaris HOM05D003723 ORTHO05D004306 1.6e-29 136.0 665 24.7
Glyma.14G089042 Glycine max HOM05D003723 ORTHO05D004306 2.1e-29 135.6 657 24.7
Gohir.D10G114400 Gossypium hirsutum HOM05D003723 ORTHO05D004306 2.1e-29 135.6 673 24.2
Sed0028163 Sechium edule HOM05D003723 ORTHO05D004306 2.1e-29 135.6 658 23.6
BcaB01g02881 Brassica carinata HOM05D003723 ORTHO05D004306 2.7e-29 135.2 359 28.1
Haze_22418 Corylus avellana HOM05D003723 ORTHO05D004306 2.7e-29 135.2 672 23.1
BcaC01g01603 Brassica carinata HOM05D003723 ORTHO05D004306 4.6e-29 134.4 644 23.0
Sc02g0007980 Simmondsia chinensis HOM05D003723 ORTHO05D004306 4.6e-29 134.4 589 22.8
BcaC01g06947 Brassica carinata HOM05D003723 ORTHO05D004306 6.0e-29 134.0 573 23.7
DCAR_032227 Daucus carota HOM05D003723 ORTHO05D004306 6.0e-29 134.0 334 30.5
Oeu014279.1 Olea europaea HOM05D003723 ORTHO05D004306 6.0e-29 134.0 581 23.9
Ca_23258_v3 Cicer arietinum L. HOM05D003723 ORTHO05D004306 7.9e-29 133.7 435 25.1
Dinv44943 Davidia involucrata HOM05D003723 ORTHO05D004306 7.9e-29 133.7 665 23.3
Gohir.A02G089200 Gossypium hirsutum HOM05D003723 ORTHO05D004306 1.3e-28 132.9 602 25.2
BraA08t34575Z Brassica rapa HOM05D003723 ORTHO05D004306 1.8e-28 132.5 643 23.6
Thhalv10028433m.g Eutrema salsugineum HOM05D003723 ORTHO05D004306 1.8e-28 132.5 372 27.7
DCAR_009874 Daucus carota HOM05D003723 ORTHO05D004306 2.3e-28 132.1 383 27.4
Carub.0001s2603 Capsella rubella HOM05D003723 ORTHO05D004306 3.0e-28 131.7 369 28.5
DCAR_012822 Daucus carota HOM05D003723 ORTHO05D004306 3.0e-28 131.7 369 28.5
Peaxi162Scf00160g00521 Petunia axillaris HOM05D003723 ORTHO05D004306 3.9e-28 131.3 633 24.5
CDE04G2329 Ceratophyllum demersum HOM05D003723 ORTHO05D004306 5.1e-28 131.0 379 26.4
Gohir.D02G112100 Gossypium hirsutum HOM05D003723 ORTHO05D004306 6.7e-28 130.6 602 24.9
TPR.G12983 Trifolium pratense HOM05D003723 ORTHO05D004306 6.7e-28 130.6 641 24.2
Thhalv10006817m.g Eutrema salsugineum HOM05D003723 ORTHO05D004306 8.7e-28 130.2 369 27.9
Glyma.17G233900 Glycine max HOM05D003723 ORTHO05D004306 1.9e-27 129.0 664 22.9
AL1G40900 Arabidopsis lyrata HOM05D003723 ORTHO05D004306 2.5e-27 128.6 369 27.4
AT1G27470 Arabidopsis thaliana HOM05D003723 ORTHO05D004306 2.5e-27 128.6 367 27.2
Sp6g10450 Schrenkiella parvula HOM05D003723 ORTHO05D004306 2.5e-27 128.6 371 27.8
TWI56G1015 Tripterygium wilfordii HOM05D003723 ORTHO05D004306 3.3e-27 128.3 378 27.2
Atru.chr13.849 Acer truncatum HOM05D003723 ORTHO05D004306 4.3e-27 127.9 662 24.3
BolC3t19677H Brassica oleracea HOM05D003723 ORTHO05D004306 4.3e-27 127.9 521 23.2
Ciclev10000301m.g Citrus clementina HOM05D003723 ORTHO05D004306 5.6e-27 127.5 663 22.8
Psat6g017680 Pisum sativum HOM05D003723 ORTHO05D004306 7.4e-27 127.1 358 28.8
DCAR_004814 Daucus carota HOM05D003723 ORTHO05D004306 9.6e-27 126.7 362 28.7
Sp1g23720 Schrenkiella parvula HOM05D003723 ORTHO05D004306 1.3e-26 126.3 371 27.0
Cre13.g606850 Chlamydomonas reinhardtii HOM05D003723 ORTHO05D004306 2.1e-26 125.6 396 29.3
CsaV3_4G035140 Cucumis sativus L. HOM05D003723 ORTHO05D004306 2.1e-26 125.6 666 23.3
Thecc.04G063000 Theobroma cacao HOM05D003723 ORTHO05D004306 2.1e-26 125.6 377 27.9
Aa31sc622G20 Aethionema arabicum HOM05D003723 ORTHO05D004306 2.8e-26 125.2 371 27.8
C03p74200 Brassica napus HOM05D003723 ORTHO05D004306 2.8e-26 125.2 571 22.8
ECA247G0551 Erigeron canadensis HOM05D003723 ORTHO05D004306 2.8e-26 125.2 619 24.1
TWI12G0955 Tripterygium wilfordii HOM05D003723 ORTHO05D004306 2.8e-26 125.2 379 28.0
HanXRQChr10g0292161 Helianthus annuus HOM05D003723 ORTHO05D004306 3.7e-26 124.8 575 25.6
CARHR027080 Cardamine hirsuta HOM05D003723 ORTHO05D004306 8.1e-26 123.6 369 27.4
Duzib151G0173 Durio zibethinus HOM05D003723 ORTHO05D004306 8.1e-26 123.6 378 27.8
SEGI_10786 Sequoiadendron giganteum HOM05D003723 ORTHO05D004306 8.1e-26 123.6 325 29.2
Lsat_1_v5_gn_1_1120 Lactuca sativa HOM05D003723 ORTHO05D004306 1.1e-25 123.2 389 27.0
Hma1.2p1_0210F.1_g089420 Hydrangea macrophylla HOM05D003723 ORTHO05D004306 1.4e-25 122.9 598 25.1
THA.LOC104825785 Tarenaya hassleriana HOM05D003723 ORTHO05D004306 1.4e-25 122.9 376 26.9
TPR.G32238 Trifolium pratense HOM05D003723 ORTHO05D004306 1.8e-25 122.5 626 22.7
Gohir.A10G151900 Gossypium hirsutum HOM05D003723 ORTHO05D004306 1.5e-24 119.4 378 27.0
PRCOL_00004412 Prasinoderma coloniale HOM05D003723 ORTHO05D004306 2.6e-24 118.6 401 24.7
MELO3C016827.2 Cucumis melo HOM05D003723 ORTHO05D004306 5.8e-24 117.5 376 26.1
Gorai.005G127000 Gossypium raimondii HOM05D003723 ORTHO05D004306 2.2e-23 115.5 341 27.9
ClCG05G020690 Citrullus lanatus HOM05D003723 ORTHO05D004306 2.4e-22 112.1 379 25.9
Actinidia10210 Actinidia chinensis HOM05D003723 ORTHO05D004306 3.5e-21 108.2 455 25.1
Actinidia19301 Actinidia chinensis HOM05D003723 ORTHO05D004306 3.5e-21 108.2 322 26.7
unitig_0.g1045 Utricularia gibba HOM05D003723 ORTHO05D004306 3.5e-21 108.2 397 26.2
Oeu036976.1 Olea europaea HOM05D003723 ORTHO05D004306 6.7e-20 104.0 334 25.4
Sed0011873 Sechium edule HOM05D003723 ORTHO05D004306 6.2e-18 97.4 476 22.7
COL.COLO4_29256 Corchorus olitorius HOM05D003723 ORTHO05D004306 1.2e-16 93.2 340 24.4
Dinv39213 Davidia involucrata HOM05D003723 ORTHO05D004306 2.5e-14 85.5 153 34.6
Lsat_1_v5_gn_1_440 Lactuca sativa HOM05D003723 ORTHO05D004306 1.9e-11 75.9 282 25.9
Pp3c18_6690 Physcomitrium patens HOM05D003723 ORTHO05D004306 1.5e-08 66.2 143 34.3
TAR376G0468 Trochodendron aralioides HOM05D003723 ORTHO05D004306 4.5e-08 64.7 114 35.1
HanXRQChr14g0443971 Helianthus annuus HOM05D003723 ORTHO05D004306 8.5e-07 60.5 145 31.0
Psat7g031120 Pisum sativum HOM05D003723 ORTHO05D004306 4.2e-06 58.2 80 37.5


User provided reference genes

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