Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa026664 Carpinus fangiana HOM05D003098 ORTHO05D122313 0.0e+00 1411.4 806 100.0
Rhsim06G0184800 Rhododendron simsii HOM05D003098 ORTHO05D003634 9.8e-09 66.6 83 41.0
Gohir.A04G046600 Gossypium hirsutum HOM05D003098 ORTHO05D003634 1.3e-08 66.2 89 38.2
Gohir.D05G335700 Gossypium hirsutum HOM05D003098 ORTHO05D003634 1.3e-08 66.2 89 38.2
Gorai.009G359400 Gossypium raimondii HOM05D003098 ORTHO05D003634 1.3e-08 66.2 89 38.2
MSTRG.15009 Avicennia marina HOM05D003098 ORTHO05D003634 2.2e-08 65.5 83 38.6
Ciclev10020251m.g Citrus clementina HOM05D003098 ORTHO05D003634 2.2e-08 65.5 83 38.6
PGR031G0814 Punica granatum HOM05D003098 ORTHO05D003634 2.2e-08 65.5 89 38.2
AT1G17145 Arabidopsis thaliana HOM05D003098 ORTHO05D003634 2.9e-08 65.1 103 32.0
Psat1g001120 Pisum sativum HOM05D003098 ORTHO05D003634 2.9e-08 65.1 115 33.9
TAR629G0752 Trochodendron aralioides HOM05D003098 ORTHO05D003634 2.9e-08 65.1 90 37.8
Cc05_g10240 Coffea canephora HOM05D003098 ORTHO05D003634 3.7e-08 64.7 89 36.0
TPR.G26632 Trifolium pratense HOM05D003098 ORTHO05D003634 3.7e-08 64.7 115 33.9
Gohir.A13G152100 Gossypium hirsutum HOM05D003098 ORTHO05D003634 4.9e-08 64.3 89 37.1
Gohir.D13G156400 Gossypium hirsutum HOM05D003098 ORTHO05D003634 4.9e-08 64.3 89 37.1
Gorai.013G177000 Gossypium raimondii HOM05D003098 ORTHO05D003634 4.9e-08 64.3 89 37.1
Nitab4.5_0002495g0020 Nicotiana tabacum HOM05D003098 ORTHO05D003634 4.9e-08 64.3 87 36.8
Nitab4.5_0005080g0040 Nicotiana tabacum HOM05D003098 ORTHO05D003634 4.9e-08 64.3 87 36.8
AL1G29360 Arabidopsis lyrata HOM05D003098 ORTHO05D003634 6.4e-08 63.9 89 34.8
CiPaw.11G068300 Carya illinoinensis HOM05D003098 ORTHO05D003634 6.4e-08 63.9 89 38.2
DCAR_013797 Daucus carota HOM05D003098 ORTHO05D003634 6.4e-08 63.9 83 37.3
Gohir.A01G041800 Gossypium hirsutum HOM05D003098 ORTHO05D003634 6.4e-08 63.9 89 37.1
Gohir.D01G029400 Gossypium hirsutum HOM05D003098 ORTHO05D003634 6.4e-08 63.9 89 37.1
Gorai.002G038700 Gossypium raimondii HOM05D003098 ORTHO05D003634 6.4e-08 63.9 89 37.1
THA.LOC104812290 Tarenaya hassleriana HOM05D003098 ORTHO05D003634 6.4e-08 63.9 85 36.5
Actinidia18845 Actinidia chinensis HOM05D003098 ORTHO05D003634 8.3e-08 63.5 89 37.1
Aa31LG4G2540 Aethionema arabicum HOM05D003098 ORTHO05D003634 8.3e-08 63.5 89 37.1
AL2G38790 Arabidopsis lyrata HOM05D003098 ORTHO05D003634 8.3e-08 63.5 89 37.1
AT1G78420 Arabidopsis thaliana HOM05D003098 ORTHO05D003634 8.3e-08 63.5 89 37.1
BcaB05g25139 Brassica carinata HOM05D003098 ORTHO05D003634 8.3e-08 63.5 89 37.1
Carub.0002s2532 Capsella rubella HOM05D003098 ORTHO05D003634 8.3e-08 63.5 89 37.1
COL.COLO4_17417 Corchorus olitorius HOM05D003098 ORTHO05D003634 8.3e-08 63.5 83 37.3
Duzib268G0819 Durio zibethinus HOM05D003098 ORTHO05D003634 8.3e-08 63.5 83 37.3
Thhalv10018644m.g Eutrema salsugineum HOM05D003098 ORTHO05D003634 8.3e-08 63.5 89 37.1
SalBow8G0445 Salvia bowleyana HOM05D003098 ORTHO05D003634 8.3e-08 63.5 83 37.3
Sp5g33520 Schrenkiella parvula HOM05D003098 ORTHO05D003634 8.3e-08 63.5 89 37.1
THA.LOC104808077 Tarenaya hassleriana HOM05D003098 ORTHO05D003634 8.3e-08 63.5 83 37.3
BcaC03g15812 Brassica carinata HOM05D003098 ORTHO05D003634 1.1e-07 63.2 89 36.0
C02p35590 Brassica napus HOM05D003098 ORTHO05D003634 1.1e-07 63.2 89 36.0
BolC2t09574H Brassica oleracea HOM05D003098 ORTHO05D003634 1.1e-07 63.2 89 36.0
Os02g0244100 Oryza sativa ssp. japonica HOM05D003098 ORTHO05D003634 1.1e-07 63.2 89 36.0
QL04p070292 Quercus lobata HOM05D003098 ORTHO05D003634 1.1e-07 63.2 115 33.0
Zm00001eb204560 Zea mays HOM05D003098 ORTHO05D003634 1.1e-07 63.2 83 38.6
Atru.chr2.1895 Acer truncatum HOM05D003098 ORTHO05D003634 1.4e-07 62.8 83 37.3
Actinidia04592 Actinidia chinensis HOM05D003098 ORTHO05D003634 1.4e-07 62.8 83 37.3
Actinidia12840 Actinidia chinensis HOM05D003098 ORTHO05D003634 1.4e-07 62.8 83 37.3
Aqoxy1G01700 Aquilegia oxysepala HOM05D003098 ORTHO05D003634 1.4e-07 62.8 89 37.1
CSS0003040 Camellia sinensis var. sinensis HOM05D003098 ORTHO05D003634 1.4e-07 62.8 83 37.3
CANSAT94G0015 Cannabis sativa HOM05D003098 ORTHO05D003634 1.4e-07 62.8 83 37.3
CARHR071940 Cardamine hirsuta HOM05D003098 ORTHO05D003634 1.4e-07 62.8 89 36.0
Migut.M00650 Erythranthe guttata HOM05D003098 ORTHO05D003634 1.4e-07 62.8 83 37.3
Eucgr.F03204 Eucalyptus grandis HOM05D003098 ORTHO05D003634 1.4e-07 62.8 83 37.3
Glyma.15G249000 Glycine max HOM05D003098 ORTHO05D003634 1.4e-07 62.8 80 38.8
HanXRQChr11g0330331 Helianthus annuus HOM05D003098 ORTHO05D003634 1.4e-07 62.8 83 37.3
Hma1.2p1_0325F.1_g125950 Hydrangea macrophylla HOM05D003098 ORTHO05D003634 1.4e-07 62.8 83 37.3
Nn4g26567 Nelumbo nucifera HOM05D003098 ORTHO05D003634 1.4e-07 62.8 83 37.3
TWI38G0376 Tripterygium wilfordii HOM05D003098 ORTHO05D003634 1.4e-07 62.8 83 37.3
TWI38G1646 Tripterygium wilfordii HOM05D003098 ORTHO05D003634 1.4e-07 62.8 83 37.3
vmacro12016 Vaccinium macrocarpon HOM05D003098 ORTHO05D003634 1.4e-07 62.8 83 37.3
AagrBONN_evm.TU.Sc2ySwM_228.3688 Anthoceros agrestis HOM05D003098 ORTHO05D003634 1.8e-07 62.4 83 37.3
Cpa.g.sc77.97 Carica papaya HOM05D003098 ORTHO05D003634 1.8e-07 62.4 89 37.1
Ca_03391_v3 Cicer arietinum L. HOM05D003098 ORTHO05D003634 1.8e-07 62.4 80 38.8
MELO3C016154.2 Cucumis melo HOM05D003098 ORTHO05D003634 1.8e-07 62.4 83 37.3
Glyma.13G259100 Glycine max HOM05D003098 ORTHO05D003634 1.8e-07 62.4 80 38.8
Lj3g0011437 Lotus japonicus HOM05D003098 ORTHO05D003634 1.8e-07 62.4 80 38.8
Medtr2g070630 Medicago truncatula HOM05D003098 ORTHO05D003634 1.8e-07 62.4 80 38.8
PSO541G6535 Papaver somniferum HOM05D003098 ORTHO05D003634 1.8e-07 62.4 83 37.3
PSO675G2036 Papaver somniferum HOM05D003098 ORTHO05D003634 1.8e-07 62.4 83 37.3
Sed0018273 Sechium edule HOM05D003098 ORTHO05D003634 1.8e-07 62.4 83 37.3
Sed0021570 Sechium edule HOM05D003098 ORTHO05D003634 1.8e-07 62.4 83 37.3
TAR627G0095 Trochodendron aralioides HOM05D003098 ORTHO05D003634 1.8e-07 62.4 83 38.6
BcaB03g16017 Brassica carinata HOM05D003098 ORTHO05D003634 2.4e-07 62.0 89 36.0
A07p43680 Brassica napus HOM05D003098 ORTHO05D003634 2.4e-07 62.0 89 36.0
BraA07t31880Z Brassica rapa HOM05D003098 ORTHO05D003634 2.4e-07 62.0 89 36.0
CAN.G1003.6 Capsicum annuum HOM05D003098 ORTHO05D003634 2.4e-07 62.0 87 35.6
ECA236G5036 Erigeron canadensis HOM05D003098 ORTHO05D003634 2.4e-07 62.0 83 37.3
Manes.15G101000 Manihot esculenta HOM05D003098 ORTHO05D003634 2.4e-07 62.0 80 37.5
Oeu020368.1 Olea europaea HOM05D003098 ORTHO05D003634 2.4e-07 62.0 83 36.1
Phvul.005G060550 Phaseolus vulgaris HOM05D003098 ORTHO05D003634 2.4e-07 62.0 80 38.8
Solyc07g056630.3 Solanum lycopersicum HOM05D003098 ORTHO05D003634 2.4e-07 62.0 87 35.6
Sopen07g029980 Solanum pennellii HOM05D003098 ORTHO05D003634 2.4e-07 62.0 87 35.6
EL10Ac4g08489 Beta vulgaris HOM05D003098 ORTHO05D003634 3.2e-07 61.6 80 37.5
AUR62037970 Chenopodium quinoa HOM05D003098 ORTHO05D003634 3.2e-07 61.6 80 37.5
AUR62041781 Chenopodium quinoa HOM05D003098 ORTHO05D003634 3.2e-07 61.6 80 37.5
Thhalv10008156m.g Eutrema salsugineum HOM05D003098 ORTHO05D003634 3.2e-07 61.6 103 34.0
Lsat_1_v5_gn_5_119821 Lactuca sativa HOM05D003098 ORTHO05D003634 3.2e-07 61.6 83 37.3
MBI07_g23222_MAGBIO Magnolia biondii HOM05D003098 ORTHO05D003634 3.2e-07 61.6 83 37.3
Nn3g20785 Nelumbo nucifera HOM05D003098 ORTHO05D003634 3.2e-07 61.6 83 37.3
Potri.011G096000 Populus trichocarpa HOM05D003098 ORTHO05D003634 3.2e-07 61.6 80 37.5
SEGI_26890 Sequoiadendron giganteum HOM05D003098 ORTHO05D003634 3.2e-07 61.6 83 37.3
GSVIVG01038087001 Vitis vinifera HOM05D003098 ORTHO05D003634 3.2e-07 61.6 83 36.1
arahy.Tifrunner.gnm1.ann1.PZE2NF Arachis hypogaea HOM05D003098 ORTHO05D003634 4.1e-07 61.2 80 40.0
CsaV3_4G007810 Cucumis sativus L. HOM05D003098 ORTHO05D003634 4.1e-07 61.2 83 36.1
DCAR_021056 Daucus carota HOM05D003098 ORTHO05D003634 4.1e-07 61.2 83 36.1
Dinv26666 Davidia involucrata HOM05D003098 ORTHO05D003634 4.1e-07 61.2 83 37.3
Lj1C810T1 Lonicera japonica HOM05D003098 ORTHO05D003634 4.1e-07 61.2 83 36.1
Pp3c3_24920 Physcomitrium patens HOM05D003098 ORTHO05D003634 4.1e-07 61.2 83 34.9
Potri.001G378000 Populus trichocarpa HOM05D003098 ORTHO05D003634 4.1e-07 61.2 80 37.5
RcHm_v2.0_Chr5g0027751 Rosa chinensis HOM05D003098 ORTHO05D003634 4.1e-07 61.2 90 34.4
Zm00001eb238650 Zea mays HOM05D003098 ORTHO05D003634 4.1e-07 61.2 83 37.3
A02p22180 Brassica napus HOM05D003098 ORTHO05D003634 5.4e-07 60.8 80 37.5
A06p13040 Brassica napus HOM05D003098 ORTHO05D003634 5.4e-07 60.8 83 34.9
BolC6t40256H Brassica oleracea HOM05D003098 ORTHO05D003634 5.4e-07 60.8 89 34.8
BraA02t07222Z Brassica rapa HOM05D003098 ORTHO05D003634 5.4e-07 60.8 80 37.5
BraA06t24463Z Brassica rapa HOM05D003098 ORTHO05D003634 5.4e-07 60.8 83 34.9
Duzib213G0182 Durio zibethinus HOM05D003098 ORTHO05D003634 5.4e-07 60.8 83 36.1
FvH4_3g16610 Fragaria vesca HOM05D003098 ORTHO05D003634 5.4e-07 60.8 84 35.7
FAN16G2875 Fragaria x ananassa HOM05D003098 ORTHO05D003634 5.4e-07 60.8 84 35.7
FAN21G2223 Fragaria x ananassa HOM05D003098 ORTHO05D003634 5.4e-07 60.8 84 35.7
MBI15_g07476_MAGBIO Magnolia biondii HOM05D003098 ORTHO05D003634 5.4e-07 60.8 83 34.9
Oeu009883.1 Olea europaea HOM05D003098 ORTHO05D003634 5.4e-07 60.8 80 37.5
Pp3c10_22920 Physcomitrium patens HOM05D003098 ORTHO05D003634 5.4e-07 60.8 83 34.9
BcaC05g25664 Brassica carinata HOM05D003098 ORTHO05D003634 7.0e-07 60.5 103 31.1
BcaC08g47416 Brassica carinata HOM05D003098 ORTHO05D003634 7.0e-07 60.5 89 34.8
C05p15520 Brassica napus HOM05D003098 ORTHO05D003634 7.0e-07 60.5 103 31.1
C06p52360 Brassica napus HOM05D003098 ORTHO05D003634 7.0e-07 60.5 89 34.8
Lalb_Chr25g0285391 Lupinus albus HOM05D003098 ORTHO05D003634 7.0e-07 60.5 80 37.5
Oeu050692.2 Olea europaea HOM05D003098 ORTHO05D003634 7.0e-07 60.5 44 59.1
Prupe.4G148900 Prunus persica HOM05D003098 ORTHO05D003634 7.0e-07 60.5 83 36.1
Sp1g15270 Schrenkiella parvula HOM05D003098 ORTHO05D003634 7.0e-07 60.5 103 33.0
THA.LOC104813978 Tarenaya hassleriana HOM05D003098 ORTHO05D003634 7.0e-07 60.5 89 36.0
CBR_g77957 Chara braunii HOM05D003098 ORTHO05D003634 9.2e-07 60.1 83 34.9
MD10G1195000 Malus domestica HOM05D003098 ORTHO05D003634 9.2e-07 60.1 83 36.1
SMO364G0643 Selaginella moellendorffii HOM05D003098 ORTHO05D003634 9.2e-07 60.1 83 34.9
ATR0730G170 Amborella trichopoda HOM05D003098 ORTHO05D003634 1.2e-06 59.7 83 36.1
BolC5t30262H Brassica oleracea HOM05D003098 ORTHO05D003634 1.2e-06 59.7 103 32.0
CSS0004559 Camellia sinensis var. sinensis HOM05D003098 ORTHO05D003634 1.2e-06 59.7 83 36.1
MD05G1208500 Malus domestica HOM05D003098 ORTHO05D003634 1.2e-06 59.7 89 36.0
MSTRG.6711 Avicennia marina HOM05D003098 ORTHO05D003634 1.6e-06 59.3 83 34.9
Aqoxy7G03253 Aquilegia oxysepala HOM05D003098 ORTHO05D003634 2.0e-06 58.9 83 34.9
TAR626G1321 Trochodendron aralioides HOM05D003098 ORTHO05D003634 2.0e-06 58.9 103 33.0
CDE10G1008 Ceratophyllum demersum HOM05D003098 ORTHO05D003634 2.7e-06 58.5 85 35.3
Hma1.2p1_1456F.1_g284580 Hydrangea macrophylla HOM05D003098 ORTHO05D003634 2.7e-06 58.5 80 37.5
Lalb_Chr03g0031451 Lupinus albus HOM05D003098 ORTHO05D003634 2.7e-06 58.5 87 35.6
Oeu058426.1 Olea europaea HOM05D003098 ORTHO05D003634 2.7e-06 58.5 83 36.1
SalBow8G0143 Salvia bowleyana HOM05D003098 ORTHO05D003634 2.7e-06 58.5 91 39.6
Dinv13310 Davidia involucrata HOM05D003098 ORTHO05D003634 3.5e-06 58.2 83 36.1
Os06g0154900 Oryza sativa ssp. japonica HOM05D003098 ORTHO05D003634 3.5e-06 58.2 83 33.7
CDE05G1295 Ceratophyllum demersum HOM05D003098 ORTHO05D003634 4.6e-06 57.8 83 37.3
Lalb_Chr01g0016081 Lupinus albus HOM05D003098 ORTHO05D003634 4.6e-06 57.8 80 36.2
Sabra16G0249000 Salix brachista HOM05D003098 ORTHO05D003634 5.9e-06 57.4 108 32.4
CDE02G0504 Ceratophyllum demersum HOM05D003098 ORTHO05D003634 7.8e-06 57.0 83 37.3
Duzib187G1141 Durio zibethinus HOM05D003098 ORTHO05D003634 7.8e-06 57.0 86 34.9
Zm00001eb376630 Zea mays HOM05D003098 ORTHO05D003634 7.8e-06 57.0 83 33.7


User provided reference genes

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