Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa026528 Carpinus fangiana HOM05D004103 ORTHO05D121785 0.0e+00 1150.6 590 100.0
Cfa021802 Carpinus fangiana HOM05D004103 ORTHO05D014807 1.8e-15 88.6 335 26.0
PRCOL_00006737 Prasinoderma coloniale HOM05D004103 ORTHO05D014807 7.7e-11 73.2 230 29.1
MCO04G032 Micromonas commoda HOM05D004103 ORTHO05D014807 2.9e-10 71.2 151 33.8
A03p13830 Brassica napus HOM05D004103 ORTHO05D005242 5.0e-10 70.5 168 33.3
Thecc.07G013500 Theobroma cacao HOM05D004103 ORTHO05D005242 5.0e-10 70.5 168 33.3
BcaC01g06391 Brassica carinata HOM05D004103 ORTHO05D005242 8.5e-10 69.7 168 33.3
C03p16270 Brassica napus HOM05D004103 ORTHO05D005242 8.5e-10 69.7 168 33.3
BolC3t14049H Brassica oleracea HOM05D004103 ORTHO05D005242 8.5e-10 69.7 168 33.3
BraA03t10686Z Brassica rapa HOM05D004103 ORTHO05D005242 8.5e-10 69.7 168 33.3
Carub.0008s1614 Capsella rubella HOM05D004103 ORTHO05D005242 8.5e-10 69.7 168 33.3
Sp6g17670 Schrenkiella parvula HOM05D004103 ORTHO05D005242 8.5e-10 69.7 168 33.3
AL8G31340 Arabidopsis lyrata HOM05D004103 ORTHO05D005242 1.1e-09 69.3 168 33.3
SGA_v2.0_scaffold171G38864 Striga asiatica HOM05D004103 ORTHO05D005242 1.1e-09 69.3 160 33.8
THA.LOC104811666 Tarenaya hassleriana HOM05D004103 ORTHO05D005242 1.1e-09 69.3 168 33.9
Aa31LG3G11690 Aethionema arabicum HOM05D004103 ORTHO05D005242 1.4e-09 68.9 168 33.3
AT5G55760 Arabidopsis thaliana HOM05D004103 ORTHO05D005242 1.4e-09 68.9 168 33.3
Duzib213G0942 Durio zibethinus HOM05D004103 ORTHO05D005242 1.4e-09 68.9 168 33.3
COL.COLO4_09834 Corchorus olitorius HOM05D004103 ORTHO05D005242 1.9e-09 68.6 168 32.7
Cpa.g.sc12.142 Carica papaya HOM05D004103 ORTHO05D005242 2.5e-09 68.2 168 32.1
Thhalv10013461m.g Eutrema salsugineum HOM05D004103 ORTHO05D005242 2.5e-09 68.2 168 32.7
vmacro11590 Vaccinium macrocarpon HOM05D004103 ORTHO05D005242 2.5e-09 68.2 171 33.9
CANSAT11G1558 Cannabis sativa HOM05D004103 ORTHO05D005242 3.2e-09 67.8 168 32.7
Mapoly0093s0042 Marchantia polymorpha HOM05D005757 ORTHO05D007090 3.2e-09 67.8 282 24.1
Gohir.D13G136100 Gossypium hirsutum HOM05D004103 ORTHO05D005242 4.2e-09 67.4 160 33.1
Gorai.013G152600 Gossypium raimondii HOM05D004103 ORTHO05D005242 4.2e-09 67.4 160 33.1
Ciclev10008206m.g Citrus clementina HOM05D004103 ORTHO05D005242 5.5e-09 67.0 160 32.5
Sabra16G0241200 Salix brachista HOM05D004103 ORTHO05D005242 5.5e-09 67.0 168 32.1
Cfa025152 Carpinus fangiana HOM05D004103 ORTHO05D014807 7.2e-09 66.6 305 25.6
Glyma.18G076300 Glycine max HOM05D004103 ORTHO05D005242 7.2e-09 66.6 161 32.9
HanXRQChr05g0160111 Helianthus annuus HOM05D004103 ORTHO05D005242 7.2e-09 66.6 276 26.1
Rhsim06G0229800 Rhododendron simsii HOM05D004103 ORTHO05D005242 7.2e-09 66.6 154 34.4
AL77U10010 Arabidopsis lyrata HOM05D004103 ORTHO05D005242 9.4e-09 66.2 159 33.3
Phvul.006G057700 Phaseolus vulgaris HOM05D004103 ORTHO05D005242 9.4e-09 66.2 161 32.9
ECA240G0272 Erigeron canadensis HOM05D004103 ORTHO05D005242 1.2e-08 65.9 188 30.9
Gohir.A13G132700 Gossypium hirsutum HOM05D004103 ORTHO05D005242 1.2e-08 65.9 160 32.5
Potri.001G368100 Populus trichocarpa HOM05D004103 ORTHO05D005242 1.2e-08 65.9 160 31.9
Actinidia05004 Actinidia chinensis HOM05D004103 ORTHO05D005242 1.6e-08 65.5 245 26.9
Lsat_1_v5_gn_5_1860 Lactuca sativa HOM05D004103 ORTHO05D005242 1.6e-08 65.5 160 33.1
Sed0001626 Sechium edule HOM05D004103 ORTHO05D005242 1.6e-08 65.5 168 32.1
SMO139G0017 Selaginella moellendorffii HOM05D004103 ORTHO05D014807 1.6e-08 65.5 163 30.7
FvH4_3g29170 Fragaria vesca HOM05D004103 ORTHO05D005242 2.1e-08 65.1 160 32.5
FAN11G2140 Fragaria x ananassa HOM05D004103 ORTHO05D005242 2.1e-08 65.1 160 32.5
MD11G1199100 Malus domestica HOM05D004103 ORTHO05D005242 2.1e-08 65.1 168 32.1
ECA246G0435 Erigeron canadensis HOM05D004103 ORTHO05D005242 2.7e-08 64.7 150 34.0
Nn1g07514 Nelumbo nucifera HOM05D004103 ORTHO05D005242 2.7e-08 64.7 168 31.0
FAN21G3724 Fragaria x ananassa HOM05D004103 ORTHO05D005242 3.6e-08 64.3 160 31.9
CiPaw.11G204100 Carya illinoinensis HOM05D004103 ORTHO05D005242 4.7e-08 63.9 168 31.5
QL08p004112 Quercus lobata HOM05D004103 ORTHO05D005242 4.7e-08 63.9 168 32.1
GSVIVG01014688001 Vitis vinifera HOM05D004103 ORTHO05D005242 4.7e-08 63.9 161 34.2
BraA02t04972Z Brassica rapa HOM05D005757 ORTHO05D007090 6.1e-08 63.5 302 21.5
Cfa020190 Carpinus fangiana HOM05D004103 ORTHO05D005242 6.1e-08 63.5 168 31.5
HanXRQChr03g0075041 Helianthus annuus HOM05D004103 ORTHO05D005242 6.1e-08 63.5 188 29.3
HPP92_018245 Vanilla planifolia HOM05D004103 ORTHO05D005242 6.1e-08 63.5 168 31.0
MSTRG.15796 Avicennia marina HOM05D004103 ORTHO05D005242 7.9e-08 63.2 168 32.1
CARHR204190 Cardamine hirsuta HOM05D005757 ORTHO05D007090 7.9e-08 63.2 310 21.9
Cfa025450 Carpinus fangiana HOM05D005757 ORTHO05D014807 7.9e-08 63.2 271 29.5
Haze_09826 Corylus avellana HOM05D004103 ORTHO05D005242 7.9e-08 63.2 160 31.9
FAN25G3398 Fragaria x ananassa HOM05D004103 ORTHO05D005242 7.9e-08 63.2 160 31.9
Lalb_Chr15g0082141 Lupinus albus HOM05D004103 ORTHO05D005242 7.9e-08 63.2 160 31.9
Os04g0271000 Oryza sativa ssp. japonica HOM05D004103 ORTHO05D005242 7.9e-08 63.2 283 25.1
Actinidia30403 Actinidia chinensis HOM05D004103 ORTHO05D005242 1.0e-07 62.8 245 26.5
AL6G19620 Arabidopsis lyrata HOM05D005757 ORTHO05D007090 1.0e-07 62.8 295 22.0
CSS0020645 Camellia sinensis var. sinensis HOM05D004103 ORTHO05D005242 1.0e-07 62.8 168 32.7
MELO3C024942.2 Cucumis melo HOM05D004103 ORTHO05D005242 1.0e-07 62.8 168 31.5
CsaV3_7G011360 Cucumis sativus L. HOM05D004103 ORTHO05D005242 1.0e-07 62.8 168 31.5
SalBow8G0562 Salvia bowleyana HOM05D004103 ORTHO05D005242 1.0e-07 62.8 160 31.9
BcaB05g21563 Brassica carinata HOM05D005757 ORTHO05D007090 1.4e-07 62.4 302 21.5
BcaC03g13245 Brassica carinata HOM05D005757 ORTHO05D007090 1.4e-07 62.4 302 21.5
CiPaw.12G138300 Carya illinoinensis HOM05D004103 ORTHO05D005242 1.4e-07 62.4 168 31.5
Lsat_1_v5_gn_9_103601 Lactuca sativa HOM05D004103 ORTHO05D005242 1.4e-07 62.4 159 31.4
MD03G1179400 Malus domestica HOM05D004103 ORTHO05D005242 1.4e-07 62.4 168 31.5
Prupe.4G243700 Prunus persica HOM05D004103 ORTHO05D005242 1.4e-07 62.4 168 31.5
C02p03770 Brassica napus HOM05D005757 ORTHO05D007090 1.8e-07 62.0 302 21.5
ClCG02G000280 Citrullus lanatus HOM05D005757 ORTHO05D007090 1.8e-07 62.0 301 23.6
Eucgr.F02047 Eucalyptus grandis HOM05D004103 ORTHO05D005242 1.8e-07 62.0 244 26.2
RcHm_v2.0_Chr5g0053471 Rosa chinensis HOM05D004103 ORTHO05D005242 1.8e-07 62.0 160 31.9
arahy.Tifrunner.gnm1.ann1.V7V5NB Arachis hypogaea HOM05D004103 ORTHO05D005242 2.3e-07 61.6 160 31.2
Carub.0006s0779 Capsella rubella HOM05D005757 ORTHO05D007090 2.3e-07 61.6 294 22.1
CBR_g42169 Chara braunii HOM05D004103 ORTHO05D014807 2.3e-07 61.6 237 27.8
Psat5g167680 Pisum sativum HOM05D004103 ORTHO05D005242 2.3e-07 61.6 160 31.9
Sc03g0011310 Simmondsia chinensis HOM05D004103 ORTHO05D005242 2.3e-07 61.6 159 32.7
Sc03g0011390 Simmondsia chinensis HOM05D004103 ORTHO05D005242 2.3e-07 61.6 168 31.5
Solyc07g065550.3 Solanum lycopersicum HOM05D004103 ORTHO05D005242 2.3e-07 61.6 160 32.5
arahy.Tifrunner.gnm1.ann1.PC7QSD Arachis hypogaea HOM05D004103 ORTHO05D005242 3.0e-07 61.2 295 26.1
Medtr3g460800 Medicago truncatula HOM05D004103 ORTHO05D005242 3.0e-07 61.2 160 31.9
Atru.chr2.3690 Acer truncatum HOM05D004103 ORTHO05D005242 3.9e-07 60.8 160 31.9
CAN.G623.3 Capsicum annuum HOM05D004103 ORTHO05D005242 3.9e-07 60.8 160 31.9
Hma1.2p1_1402F.1_g281120 Hydrangea macrophylla HOM05D004103 ORTHO05D005242 3.9e-07 60.8 168 32.1
Ciclev10001356m.g Citrus clementina HOM05D005757 ORTHO05D007090 5.1e-07 60.5 300 23.7
PGR083G2215 Punica granatum HOM05D004103 ORTHO05D005242 5.1e-07 60.5 168 32.1
SMO234G0037 Selaginella moellendorffii HOM05D004103 ORTHO05D005242 5.1e-07 60.5 168 31.0
TWI38G1679 Tripterygium wilfordii HOM05D004103 ORTHO05D005242 5.1e-07 60.5 168 31.5
AT5G09230 Arabidopsis thaliana HOM05D005757 ORTHO05D007090 6.7e-07 60.1 295 21.4
BolC2t06338H Brassica oleracea HOM05D005757 ORTHO05D007090 6.7e-07 60.1 302 21.2
Migut.M01651 Erythranthe guttata HOM05D004103 ORTHO05D005242 6.7e-07 60.1 168 29.8
Nitab4.5_0002736g0050 Nicotiana tabacum HOM05D004103 ORTHO05D005242 6.7e-07 60.1 160 31.9
Oeu005958.1 Olea europaea HOM05D004103 ORTHO05D005242 6.7e-07 60.1 168 31.5
QL04p068062 Quercus lobata HOM05D004103 ORTHO05D005242 6.7e-07 60.1 185 30.3
Zm00001eb425070 Zea mays HOM05D004103 ORTHO05D005242 6.7e-07 60.1 284 25.0
AagrBONN_evm.TU.Sc2ySwM_228.570 Anthoceros agrestis HOM05D004103 ORTHO05D005242 8.8e-07 59.7 235 26.0
ClCG09G021370 Citrullus lanatus HOM05D004103 ORTHO05D005242 8.8e-07 59.7 168 31.5
Peaxi162Scf00139g01322 Petunia axillaris HOM05D004103 ORTHO05D005242 1.1e-06 59.3 160 31.2
CSS0030605 Camellia sinensis var. sinensis HOM05D004103 ORTHO05D005242 1.5e-06 58.9 151 31.8
Cre05.g234663 Chlamydomonas reinhardtii HOM05D005757 ORTHO05D142638 1.5e-06 58.9 238 22.7
Lj6g0015560 Lotus japonicus HOM05D004103 ORTHO05D005242 1.5e-06 58.9 160 30.6
CSS0003811 Camellia sinensis var. sinensis HOM05D004103 ORTHO05D005242 2.0e-06 58.5 147 32.7
CSS0037338 Camellia sinensis var. sinensis HOM05D004103 ORTHO05D005242 2.0e-06 58.5 273 24.9
Glyma.08G330200 Glycine max HOM05D004103 ORTHO05D005242 2.0e-06 58.5 144 32.6
ATR0691G219 Amborella trichopoda HOM05D004103 ORTHO05D005242 2.6e-06 58.2 160 30.0
BcaB01g04374 Brassica carinata HOM05D004103 ORTHO05D005242 2.6e-06 58.2 149 32.9
PGSC0003DMG400022278 Solanum tuberosum HOM05D004103 ORTHO05D005242 2.6e-06 58.2 143 33.6
Cc00_g16050 Coffea canephora HOM05D004103 ORTHO05D005242 3.3e-06 57.8 199 27.6
Thhalv10013744m.g Eutrema salsugineum HOM05D005757 ORTHO05D007090 3.3e-06 57.8 310 21.3
Pp3c19_11620 Physcomitrium patens HOM05D004103 ORTHO05D005242 3.3e-06 57.8 177 27.7
vmacro12077 Vaccinium macrocarpon HOM05D004103 ORTHO05D005242 3.3e-06 57.8 158 30.4
Aqoxy4G02289 Aquilegia oxysepala HOM05D004103 ORTHO05D005242 4.4e-06 57.4 168 29.8
Ca_22143_v3 Cicer arietinum L. HOM05D004103 ORTHO05D005242 4.4e-06 57.4 143 32.2
Pp3c16_14390 Physcomitrium patens HOM05D005757 ORTHO05D007090 4.4e-06 57.4 286 23.1
MCO09G505 Micromonas commoda HOM05D004103 ORTHO05D005242 5.7e-06 57.0 294 26.2
Sc16g0009550 Simmondsia chinensis HOM05D005757 ORTHO05D007090 5.7e-06 57.0 292 24.0
TAR629G0286 Trochodendron aralioides HOM05D004103 ORTHO05D005242 5.7e-06 57.0 159 28.9
Aa31LG3G17760 Aethionema arabicum HOM05D005757 ORTHO05D007090 7.4e-06 56.6 297 20.5
Mapoly0113s0054 Marchantia polymorpha HOM05D005757 ORTHO05D014807 7.4e-06 56.6 208 26.9
PSO541G4137 Papaver somniferum HOM05D004103 ORTHO05D005242 7.4e-06 56.6 160 28.8
TPR.G24129 Trifolium pratense HOM05D004103 ORTHO05D005242 9.7e-06 56.2 143 32.2


User provided reference genes

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