Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa025916 Carpinus fangiana HOM05D002887 ORTHO05D001017 0.0e+00 2584.3 1325 100.0
Actinidia29062 Actinidia chinensis HOM05D002125 ORTHO05D002105 6.3e-13 81.3 301 24.9
BcaNung04741 Brassica carinata HOM05D002125 ORTHO05D002105 1.2e-11 77.0 285 23.9
Ah.08g209960 Amaranthus hybridus HOM05D002125 ORTHO05D002105 7.7e-11 74.3 269 26.8
Nitab4.5_0000028g0350 Nicotiana tabacum HOM05D001818 ORTHO05D001780 1.1e-09 70.5 287 24.4
Nitab4.5_0004209g0030 Nicotiana tabacum HOM05D001818 ORTHO05D001780 1.1e-09 70.5 287 24.4
CSS0047715 Camellia sinensis var. sinensis HOM05D002125 ORTHO05D002105 1.5e-09 70.1 258 25.2
TPR.G29733 Trifolium pratense HOM05D001219 ORTHO05D001017 1.9e-09 69.7 243 25.9
Rhsim01G0031300 Rhododendron simsii HOM05D001219 ORTHO05D001017 3.2e-09 68.9 285 23.9
CiPaw.13G068100 Carya illinoinensis HOM05D002125 ORTHO05D002105 4.2e-09 68.6 306 24.2
HanXRQChr16g0500041 Helianthus annuus HOM05D001219 ORTHO05D001017 4.2e-09 68.6 258 23.6
PGR142G2418 Punica granatum HOM05D002887 ORTHO05D003159 7.2e-09 67.8 272 23.9
Sabra03G0131300 Salix brachista HOM05D001219 ORTHO05D001017 7.2e-09 67.8 349 21.2
EL10Ac7g16789 Beta vulgaris HOM05D002125 ORTHO05D002105 1.2e-08 67.0 265 23.8
Lj5g0021290 Lotus japonicus HOM05D002887 ORTHO05D003159 1.2e-08 67.0 292 25.0
Actinidia20539 Actinidia chinensis HOM05D002887 ORTHO05D003159 1.6e-08 66.6 267 23.6
THA.LOC104812449 Tarenaya hassleriana HOM05D001219 ORTHO05D001017 1.6e-08 66.6 227 26.4
TWI12G1478 Tripterygium wilfordii HOM05D001219 ORTHO05D001017 2.1e-08 66.2 277 26.7
ClCG02G019190 Citrullus lanatus HOM05D002125 ORTHO05D002105 2.7e-08 65.9 324 24.1
ClCG10G022490 Citrullus lanatus HOM05D002125 ORTHO05D002105 3.6e-08 65.5 124 29.8
TPR.G2454 Trifolium pratense HOM05D002887 ORTHO05D003159 4.7e-08 65.1 292 24.7
Ca_03284_v3 Cicer arietinum L. HOM05D002887 ORTHO05D003159 6.1e-08 64.7 292 24.7
CAN.G955.3 Capsicum annuum HOM05D002125 ORTHO05D002105 8.0e-08 64.3 290 23.1
Eucgr.I01466 Eucalyptus grandis HOM05D002887 ORTHO05D003159 8.0e-08 64.3 270 27.0
ATR0629G134 Amborella trichopoda HOM05D001219 ORTHO05D001017 1.0e-07 63.9 332 23.5
Gohir.D07G032000 Gossypium hirsutum HOM05D001818 ORTHO05D001780 1.0e-07 63.9 133 33.1
Manes.04G105600 Manihot esculenta HOM05D001219 ORTHO05D001017 1.0e-07 63.9 385 22.9
Psat6g232960 Pisum sativum HOM05D002887 ORTHO05D003159 1.0e-07 63.9 292 24.0
Sp6g19570 Schrenkiella parvula HOM05D003333 ORTHO05D003836 1.0e-07 63.9 295 23.4
Actinidia11543 Actinidia chinensis HOM05D002125 ORTHO05D002105 1.8e-07 63.2 121 31.4
Medtr4g009030 Medicago truncatula HOM05D001219 ORTHO05D001017 1.8e-07 63.2 313 23.0
AT5G57900 Arabidopsis thaliana HOM05D003333 ORTHO05D003836 2.3e-07 62.8 272 23.5
Potri.004G179571 Populus trichocarpa HOM05D002887 ORTHO05D003159 2.3e-07 62.8 291 23.7
SMO143G0319 Selaginella moellendorffii HOM05D002629 ORTHO05D003221 2.3e-07 62.8 180 25.0
CDE05G1517 Ceratophyllum demersum HOM05D002762 ORTHO05D004643 3.0e-07 62.4 289 23.5
CsaV3_3G033360 Cucumis sativus L. HOM05D002125 ORTHO05D002105 3.0e-07 62.4 263 24.3
FAN27G1571 Fragaria x ananassa HOM05D002887 ORTHO05D003159 3.0e-07 62.4 229 24.9
VMungo0647G0746 Vigna mungo HOM05D002125 ORTHO05D002105 4.0e-07 62.0 307 25.4
COL.COLO4_26644 Corchorus olitorius HOM05D001219 ORTHO05D001017 5.2e-07 61.6 228 24.1
FAN20G1407 Fragaria x ananassa HOM05D002887 ORTHO05D003159 5.2e-07 61.6 229 24.9
Ciclev10028005m.g Citrus clementina HOM05D002887 ORTHO05D003159 6.8e-07 61.2 292 23.6
DCAR_019856 Daucus carota HOM05D007176 ORTHO05D009050 6.8e-07 61.2 256 24.6
CsaV3_7G032020 Cucumis sativus L. HOM05D001219 ORTHO05D001017 8.8e-07 60.8 283 24.4
PGR004G0027 Punica granatum HOM05D002125 ORTHO05D002105 8.8e-07 60.8 283 23.7
Thecc.06G037400 Theobroma cacao HOM05D001219 ORTHO05D001017 8.8e-07 60.8 175 26.3
Aa31LG11G9690 Aethionema arabicum HOM05D002125 ORTHO05D002105 1.2e-06 60.5 225 23.6
PRCOL_00005880 Prasinoderma coloniale HOM05D007176 ORTHO05D009050 1.2e-06 60.5 260 23.1
Rhsim01G0032900 Rhododendron simsii HOM05D001219 ORTHO05D001017 1.2e-06 60.5 193 22.3
RhsimUnG0244000 Rhododendron simsii HOM05D001219 ORTHO05D001017 1.5e-06 60.1 275 25.1
arahy.Tifrunner.gnm1.ann1.DJ9YQ7 Arachis hypogaea HOM05D002887 ORTHO05D003159 2.0e-06 59.7 292 24.7
BolC6t40404H Brassica oleracea HOM05D001219 ORTHO05D001017 2.0e-06 59.7 368 20.1
MELO3C023455.2 Cucumis melo HOM05D001219 ORTHO05D001017 2.0e-06 59.7 283 24.4
Ca_04901_v3 Cicer arietinum L. HOM05D001219 ORTHO05D001017 2.6e-06 59.3 232 26.3
DCAR_022829 Daucus carota HOM05D002887 ORTHO05D003159 2.6e-06 59.3 301 23.6
Gorai.001G033400 Gossypium raimondii HOM05D001818 ORTHO05D001780 2.6e-06 59.3 133 31.6
Sabra04G0120900 Salix brachista HOM05D002887 ORTHO05D003159 2.6e-06 59.3 266 23.3
CiPaw.05G086400 Carya illinoinensis HOM05D002887 ORTHO05D003159 3.4e-06 58.9 249 23.3
MELO3C025685.2 Cucumis melo HOM05D002125 ORTHO05D002105 3.4e-06 58.9 299 23.4
CsaV3_1G040990 Cucumis sativus L. HOM05D003317 ORTHO05D003696 3.4e-06 58.9 222 23.9
SalBow1G7852 Salvia bowleyana HOM05D002887 ORTHO05D003159 3.4e-06 58.9 273 23.8
AT5G25350 Arabidopsis thaliana HOM05D001818 ORTHO05D001780 4.4e-06 58.5 218 23.4
A04p19710 Brassica napus HOM05D001818 ORTHO05D001780 4.4e-06 58.5 215 22.8
BraA04t17561Z Brassica rapa HOM05D001818 ORTHO05D001780 4.4e-06 58.5 215 22.8
Ca_28544_v3 Cicer arietinum L. HOM05D001219 ORTHO05D001017 4.4e-06 58.5 212 26.4
Phvul.008G251200 Phaseolus vulgaris HOM05D002125 ORTHO05D002105 4.4e-06 58.5 279 25.1
Nn4g26135 Nelumbo nucifera HOM05D002762 ORTHO05D004643 5.7e-06 58.2 276 24.3
Thecc.06G037000 Theobroma cacao HOM05D001219 ORTHO05D001017 5.7e-06 58.2 150 27.3
VMungo0720G1985 Vigna mungo HOM05D006667 ORTHO05D008387 5.7e-06 58.2 166 25.3
Oeu044200.1 Olea europaea HOM05D001818 ORTHO05D001780 7.5e-06 57.8 115 35.7
Ca_30910_v3 Cicer arietinum L. HOM05D001219 ORTHO05D001017 9.8e-06 57.4 212 25.9
Ciclev10004705m.g Citrus clementina HOM05D002762 ORTHO05D004643 9.8e-06 57.4 149 30.9
Duzib248G0120 Durio zibethinus HOM05D002887 ORTHO05D003159 9.8e-06 57.4 225 25.3
ECA234G2999 Erigeron canadensis HOM05D001818 ORTHO05D001780 9.8e-06 57.4 209 23.9
Sopen08g020490 Solanum pennellii HOM05D002813 ORTHO05D003203 9.8e-06 57.4 267 24.3


User provided reference genes

Program Settings