Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa025344 Carpinus fangiana HOM05D004200 ORTHO05D004996 1.4e-97 359.8 198 100.0
Sc16g0010470 Simmondsia chinensis HOM05D004200 ORTHO05D004996 2.0e-11 73.6 58 56.9
CAN.G1921.6 Capsicum annuum HOM05D004200 ORTHO05D004996 2.6e-11 73.2 58 55.2
CBR_g36466 Chara braunii HOM05D004200 ORTHO05D004996 2.6e-11 73.2 88 47.7
Lj1g0022981 Lotus japonicus HOM05D004200 ORTHO05D004996 2.6e-11 73.2 47 66.0
Nitab4.5_0000582g0030 Nicotiana tabacum HOM05D004200 ORTHO05D004996 2.6e-11 73.2 58 55.2
Solyc05g056280.2 Solanum lycopersicum HOM05D004200 ORTHO05D004996 2.6e-11 73.2 58 55.2
Sopen05g034670 Solanum pennellii HOM05D004200 ORTHO05D004996 2.6e-11 73.2 58 55.2
Cfa006248 Carpinus fangiana HOM05D004200 ORTHO05D004996 5.7e-11 72.0 58 55.2
Lsat_1_v5_gn_0_14781 Lactuca sativa HOM05D004200 ORTHO05D004996 5.7e-11 72.0 58 55.2
MBI11_g10486_MAGBIO Magnolia biondii HOM05D004200 ORTHO05D004996 5.7e-11 72.0 47 63.8
SEGI_05832 Sequoiadendron giganteum HOM05D004200 ORTHO05D004996 5.7e-11 72.0 47 63.8
PGSC0003DMG402023454 Solanum tuberosum HOM05D004200 ORTHO05D004996 5.7e-11 72.0 58 53.4
Peaxi162Scf00353g00751 Petunia axillaris HOM05D004200 ORTHO05D004996 7.5e-11 71.6 140 35.0
Haze_26867 Corylus avellana HOM05D004200 ORTHO05D006360 9.8e-11 71.2 151 33.1
SEGI_02846 Sequoiadendron giganteum HOM05D004200 ORTHO05D004996 9.8e-11 71.2 47 63.8
Actinidia03266 Actinidia chinensis HOM05D004200 ORTHO05D004996 1.3e-10 70.9 47 63.8
AagrBONN_evm.TU.Sc2ySwM_368.146 Anthoceros agrestis HOM05D004200 ORTHO05D004996 1.3e-10 70.9 58 55.2
Aqoxy2G04143 Aquilegia oxysepala HOM05D004200 ORTHO05D004996 1.3e-10 70.9 59 57.6
arahy.Tifrunner.gnm1.ann1.26W00C Arachis hypogaea HOM05D004200 ORTHO05D004996 1.3e-10 70.9 47 63.8
arahy.Tifrunner.gnm1.ann1.28W6CD Arachis hypogaea HOM05D004200 ORTHO05D004996 1.3e-10 70.9 47 63.8
CANSAT54G2186 Cannabis sativa HOM05D004200 ORTHO05D004996 1.3e-10 70.9 47 63.8
CiPaw.07G082000 Carya illinoinensis HOM05D004200 ORTHO05D004996 1.3e-10 70.9 47 63.8
CDE07G0335 Ceratophyllum demersum HOM05D004200 ORTHO05D004996 1.3e-10 70.9 59 57.6
AUR62000293 Chenopodium quinoa HOM05D004200 ORTHO05D004996 1.3e-10 70.9 47 63.8
AUR62006639 Chenopodium quinoa HOM05D004200 ORTHO05D004996 1.3e-10 70.9 47 63.8
ClCG11G009760 Citrullus lanatus HOM05D004200 ORTHO05D004996 1.3e-10 70.9 47 63.8
Cc09_g03900 Coffea canephora HOM05D004200 ORTHO05D004996 1.3e-10 70.9 47 63.8
MELO3C008563.2 Cucumis melo HOM05D004200 ORTHO05D004996 1.3e-10 70.9 47 63.8
CsaV3_2G010530 Cucumis sativus L. HOM05D004200 ORTHO05D004996 1.3e-10 70.9 47 63.8
Glyma.09G248800 Glycine max HOM05D004200 ORTHO05D004996 1.3e-10 70.9 47 63.8
Glyma.18G243900 Glycine max HOM05D004200 ORTHO05D004996 1.3e-10 70.9 47 63.8
Hma1.2p1_0220F.1_g092980 Hydrangea macrophylla HOM05D004200 ORTHO05D004996 1.3e-10 70.9 47 63.8
Lalb_Chr01g0020581 Lupinus albus HOM05D004200 ORTHO05D004996 1.3e-10 70.9 47 63.8
Lalb_Chr03g0038051 Lupinus albus HOM05D004200 ORTHO05D004996 1.3e-10 70.9 47 63.8
MD04G1246800 Malus domestica HOM05D004200 ORTHO05D004996 1.3e-10 70.9 47 63.8
MD12G1263400 Malus domestica HOM05D004200 ORTHO05D004996 1.3e-10 70.9 47 63.8
Manes.12G003500 Manihot esculenta HOM05D004200 ORTHO05D004996 1.3e-10 70.9 47 63.8
Manes.13G003600 Manihot esculenta HOM05D004200 ORTHO05D004996 1.3e-10 70.9 47 63.8
Medtr7g080320 Medicago truncatula HOM05D004200 ORTHO05D004996 1.3e-10 70.9 47 63.8
Nitab4.5_0004652g0020 Nicotiana tabacum HOM05D004200 ORTHO05D004996 1.3e-10 70.9 47 63.8
Phvul.008G052700 Phaseolus vulgaris HOM05D004200 ORTHO05D004996 1.3e-10 70.9 47 63.8
Prupe.6G363000 Prunus persica HOM05D004200 ORTHO05D004996 1.3e-10 70.9 47 63.8
QL01p048256 Quercus lobata HOM05D004200 ORTHO05D004996 1.3e-10 70.9 47 63.8
Sed0018905 Sechium edule HOM05D004200 ORTHO05D004996 1.3e-10 70.9 47 63.8
Hund07362 Selenicereus undatus HOM05D004200 ORTHO05D004996 1.3e-10 70.9 58 53.4
TPR.G33888 Trifolium pratense HOM05D004200 ORTHO05D004996 1.3e-10 70.9 47 63.8
TWI36G1378 Tripterygium wilfordii HOM05D004200 ORTHO05D004996 1.3e-10 70.9 47 63.8
TAR633G1708 Trochodendron aralioides HOM05D004200 ORTHO05D004996 1.3e-10 70.9 47 63.8
VMungo1383G0269 Vigna mungo HOM05D004200 ORTHO05D004996 1.3e-10 70.9 47 63.8
GSVIVG01019063001 Vitis vinifera HOM05D004200 ORTHO05D004996 1.3e-10 70.9 47 63.8
ATR0743G001 Amborella trichopoda HOM05D004200 ORTHO05D004996 1.7e-10 70.5 47 63.8
CDE04G0807 Ceratophyllum demersum HOM05D004200 ORTHO05D004996 1.7e-10 70.5 59 57.6
Cpa.g.sc123.38 Carica papaya HOM05D004200 ORTHO05D004996 2.2e-10 70.1 47 63.8
Ciclev10012249m.g Citrus clementina HOM05D004200 ORTHO05D004996 2.2e-10 70.1 47 63.8
COL.COLO4_08422 Corchorus olitorius HOM05D004200 ORTHO05D004996 2.2e-10 70.1 47 63.8
ECA232G1350 Erigeron canadensis HOM05D004200 ORTHO05D004996 2.2e-10 70.1 47 63.8
Eucgr.B01428 Eucalyptus grandis HOM05D004200 ORTHO05D004996 2.2e-10 70.1 47 63.8
FvH4_6g00250 Fragaria vesca HOM05D004200 ORTHO05D004996 2.2e-10 70.1 47 63.8
FAN02G3263 Fragaria x ananassa HOM05D004200 ORTHO05D004996 2.2e-10 70.1 47 63.8
FAN05G5080 Fragaria x ananassa HOM05D004200 ORTHO05D004996 2.2e-10 70.1 47 63.8
FAN09G2946 Fragaria x ananassa HOM05D004200 ORTHO05D004996 2.2e-10 70.1 47 63.8
Gohir.D03G078000 Gossypium hirsutum HOM05D004200 ORTHO05D004996 2.2e-10 70.1 47 63.8
Gorai.003G086100 Gossypium raimondii HOM05D004200 ORTHO05D004996 2.2e-10 70.1 47 63.8
HanXRQChr04g0101101 Helianthus annuus HOM05D004200 ORTHO05D004996 2.2e-10 70.1 47 63.8
HanXRQChr15g0492211 Helianthus annuus HOM05D004200 ORTHO05D004996 2.2e-10 70.1 47 63.8
Nn1g09712 Nelumbo nucifera HOM05D004200 ORTHO05D004996 2.2e-10 70.1 47 63.8
Nn7g37558 Nelumbo nucifera HOM05D004200 ORTHO05D004996 2.2e-10 70.1 47 63.8
Potri.019G055000 Populus trichocarpa HOM05D004200 ORTHO05D004996 2.2e-10 70.1 80 47.5
PGR119G0338 Punica granatum HOM05D004200 ORTHO05D004996 2.2e-10 70.1 47 63.8
RcHm_v2.0_Chr3g0447621 Rosa chinensis HOM05D004200 ORTHO05D004996 2.2e-10 70.1 47 63.8
Hund21914 Selenicereus undatus HOM05D004200 ORTHO05D004996 2.2e-10 70.1 58 56.9
Thecc.05G189300 Theobroma cacao HOM05D004200 ORTHO05D004996 2.2e-10 70.1 47 63.8
Duzib235G1318 Durio zibethinus HOM05D004200 ORTHO05D004996 2.8e-10 69.7 47 63.8
PSO675G0506 Papaver somniferum HOM05D004200 ORTHO05D004996 2.8e-10 69.7 47 61.7
Haze_04586 Corylus avellana HOM05D004200 ORTHO05D004996 3.7e-10 69.3 44 65.9
Potri.013G084800 Populus trichocarpa HOM05D004200 ORTHO05D004996 4.9e-10 68.9 46 63.0
Sabra19G0064000 Salix brachista HOM05D004200 ORTHO05D004996 4.9e-10 68.9 77 48.1
SGA_v2.0_scaffold340G49307 Striga asiatica HOM05D004200 ORTHO05D004996 6.3e-10 68.6 81 45.7
BcaC03g13520 Brassica carinata HOM05D004200 ORTHO05D004996 8.3e-10 68.2 47 61.7
A02p04200 Brassica napus HOM05D004200 ORTHO05D004996 8.3e-10 68.2 47 61.7
C02p09080 Brassica napus HOM05D004200 ORTHO05D004996 8.3e-10 68.2 47 61.7
BolC2t06818H Brassica oleracea HOM05D004200 ORTHO05D004996 8.3e-10 68.2 47 61.7
BraA02t05383Z Brassica rapa HOM05D004200 ORTHO05D004996 8.3e-10 68.2 47 61.7
Migut.F01862 Erythranthe guttata HOM05D004200 ORTHO05D004996 8.3e-10 68.2 47 61.7
Migut.F02106 Erythranthe guttata HOM05D004200 ORTHO05D004996 8.3e-10 68.2 47 61.7
Mapoly0074s0043 Marchantia polymorpha HOM05D004200 ORTHO05D004996 8.3e-10 68.2 136 36.8
Pp3c25_5550 Physcomitrium patens HOM05D004200 ORTHO05D004996 8.3e-10 68.2 124 37.9
unitig_26.g9576 Utricularia gibba HOM05D004200 ORTHO05D004996 8.3e-10 68.2 58 53.4
PSO210G5049 Papaver somniferum HOM05D004200 ORTHO05D004996 1.1e-09 67.8 47 61.7
Peaxi162Scf00742g00213 Petunia axillaris HOM05D004200 ORTHO05D004996 1.1e-09 67.8 48 60.4
Pp3c16_8650 Physcomitrium patens HOM05D004200 ORTHO05D004996 1.1e-09 67.8 128 36.7
Zm00001eb246650 Zea mays HOM05D004200 ORTHO05D004996 1.1e-09 67.8 76 43.4
CSS0000339 Camellia sinensis var. sinensis HOM05D004200 ORTHO05D004996 1.4e-09 67.4 39 71.8
Ca_08002_v3 Cicer arietinum L. HOM05D004200 ORTHO05D004996 1.4e-09 67.4 39 71.8
Dinv00535 Davidia involucrata HOM05D004200 ORTHO05D004996 1.4e-09 67.4 39 71.8
Dinv29084 Davidia involucrata HOM05D004200 ORTHO05D004996 1.4e-09 67.4 39 71.8
Lj1C579T11 Lonicera japonica HOM05D004200 ORTHO05D004996 1.4e-09 67.4 39 71.8
Oeu034779.1 Olea europaea HOM05D004200 ORTHO05D004996 1.4e-09 67.4 39 71.8
Sabra13G0078600 Salix brachista HOM05D004200 ORTHO05D004996 1.4e-09 67.4 39 71.8
SMO174G0194 Selaginella moellendorffii HOM05D004200 ORTHO05D004996 1.4e-09 67.4 39 71.8
SGA_v2.0_scaffold62G21494 Striga asiatica HOM05D004200 ORTHO05D004996 1.4e-09 67.4 39 71.8
Gohir.A02G105800 Gossypium hirsutum HOM05D004200 ORTHO05D004996 1.8e-09 67.0 38 73.7
Os03g0843500 Oryza sativa ssp. japonica HOM05D004200 ORTHO05D004996 1.8e-09 67.0 44 63.6
HPP92_004648 Vanilla planifolia HOM05D004200 ORTHO05D004996 1.8e-09 67.0 47 59.6
Os02g0605600 Oryza sativa ssp. japonica HOM05D004200 ORTHO05D004996 2.4e-09 66.6 47 57.4
Aa31LG11G12210 Aethionema arabicum HOM05D004200 ORTHO05D004996 3.1e-09 66.2 47 59.6
Aa31LG5G13880 Aethionema arabicum HOM05D004200 ORTHO05D004996 3.1e-09 66.2 47 59.6
AT5G17440 Arabidopsis thaliana HOM05D004200 ORTHO05D004996 3.1e-09 66.2 47 59.6
BcaB01g05204 Brassica carinata HOM05D004200 ORTHO05D004996 3.1e-09 66.2 47 59.6
BcaB08g36770 Brassica carinata HOM05D004200 ORTHO05D004996 3.1e-09 66.2 47 59.6
BcaC04g18792 Brassica carinata HOM05D004200 ORTHO05D004996 3.1e-09 66.2 47 59.6
A10p21960 Brassica napus HOM05D004200 ORTHO05D004996 3.1e-09 66.2 47 59.6
C03p09760 Brassica napus HOM05D004200 ORTHO05D004996 3.1e-09 66.2 47 59.6
C09p59710 Brassica napus HOM05D004200 ORTHO05D004996 3.1e-09 66.2 47 59.6
BolC3t13465H Brassica oleracea HOM05D004200 ORTHO05D004996 3.1e-09 66.2 47 59.6
BolC9t58809H Brassica oleracea HOM05D004200 ORTHO05D004996 3.1e-09 66.2 47 59.6
BraA03t10158Z Brassica rapa HOM05D004200 ORTHO05D004996 3.1e-09 66.2 47 59.6
BraA10t44254Z Brassica rapa HOM05D004200 ORTHO05D004996 3.1e-09 66.2 47 59.6
Carub.0006s1566 Capsella rubella HOM05D004200 ORTHO05D004996 3.1e-09 66.2 47 59.6
Thhalv10013707m.g Eutrema salsugineum HOM05D004200 ORTHO05D004996 3.1e-09 66.2 47 59.6
Sp6g26780 Schrenkiella parvula HOM05D004200 ORTHO05D004996 3.1e-09 66.2 47 59.6
THA.LOC104820847 Tarenaya hassleriana HOM05D004200 ORTHO05D004996 4.1e-09 65.9 38 71.1
Carub.0003s0251 Capsella rubella HOM05D004200 ORTHO05D004996 5.4e-09 65.5 47 59.6
Oeu064498.2 Olea europaea HOM05D004200 ORTHO05D004996 5.4e-09 65.5 39 69.2
Zm00001eb210930 Zea mays HOM05D004200 ORTHO05D004996 5.4e-09 65.5 39 69.2
PSO832G1195 Papaver somniferum HOM05D004200 ORTHO05D004996 7.0e-09 65.1 47 59.6
Zm00001eb064140 Zea mays HOM05D004200 ORTHO05D004996 7.0e-09 65.1 38 71.1
AL3G12970 Arabidopsis lyrata HOM05D004200 ORTHO05D004996 9.2e-09 64.7 47 59.6
AT3G03340 Arabidopsis thaliana HOM05D004200 ORTHO05D004996 9.2e-09 64.7 47 59.6
Sc09g0001390 Simmondsia chinensis HOM05D004200 ORTHO05D004996 1.2e-08 64.3 39 66.7
THA.LOC104802907 Tarenaya hassleriana HOM05D004200 ORTHO05D004996 2.7e-08 63.2 38 68.4
Ah.04g159100 Amaranthus hybridus HOM05D004200 ORTHO05D004996 3.5e-08 62.8 68 41.2
Nitab4.5_0000080g0180 Nicotiana tabacum HOM05D004200 ORTHO05D004996 1.0e-07 61.2 78 44.9
vmacro10414 Vaccinium macrocarpon HOM05D004200 ORTHO05D004996 1.0e-07 61.2 73 42.5
SMO143G0228 Selaginella moellendorffii HOM05D005321 ORTHO05D006360 1.3e-07 60.8 144 26.4
CSS0002176 Camellia sinensis var. sinensis HOM05D004200 ORTHO05D004996 1.7e-07 60.5 33 75.8
SalBow1G8230 Salvia bowleyana HOM05D004200 ORTHO05D004996 1.7e-07 60.5 33 75.8
Pp3c15_9680 Physcomitrium patens HOM05D005321 ORTHO05D006360 6.6e-07 58.5 155 26.5
SalBow6G2550 Salvia bowleyana HOM05D004200 ORTHO05D004996 8.6e-07 58.2 80 38.8
Mapoly0012s0200 Marchantia polymorpha HOM05D005321 ORTHO05D006360 1.5e-06 57.4 144 26.4
Rhsim09G0129000 Rhododendron simsii HOM05D004200 ORTHO05D004996 1.5e-06 57.4 54 51.9


User provided reference genes

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