Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa024992 Carpinus fangiana HOM05D002417 ORTHO05D124858 0.0e+00 1621.3 860 100.0
FAN03G1563 Fragaria x ananassa HOM05D002417 ORTHO05D002589 4.1e-13 81.3 264 26.1
arahy.Tifrunner.gnm1.ann1.2055DB Arachis hypogaea HOM05D002417 ORTHO05D002589 7.0e-13 80.5 264 28.8
arahy.Tifrunner.gnm1.ann1.X6LJQK Arachis hypogaea HOM05D002417 ORTHO05D002589 9.1e-13 80.1 264 29.2
RcHm_v2.0_Chr1g0383331 Rosa chinensis HOM05D002417 ORTHO05D002589 1.6e-12 79.3 264 26.1
FvH4_7g33350 Fragaria vesca HOM05D002417 ORTHO05D002589 2.0e-12 79.0 264 25.8
arahy.Tifrunner.gnm1.ann1.M50AVM Arachis hypogaea HOM05D002417 ORTHO05D002589 3.5e-12 78.2 264 28.8
Lalb_Chr04g0252581 Lupinus albus HOM05D002417 ORTHO05D002589 1.7e-11 75.9 331 26.9
Aqoxy5G04394 Aquilegia oxysepala HOM05D002417 ORTHO05D002589 6.6e-11 73.9 268 25.7
Manes.01G001100 Manihot esculenta HOM05D002417 ORTHO05D002589 6.6e-11 73.9 306 25.5
Prupe.2G322400 Prunus persica HOM05D002417 ORTHO05D002589 6.6e-11 73.9 252 26.6
unitig_37.g11999 Utricularia gibba HOM05D002417 ORTHO05D002589 8.6e-11 73.6 252 27.4
COL.COLO4_22433 Corchorus olitorius HOM05D002417 ORTHO05D002589 1.5e-10 72.8 322 26.4
unitig_92.g28234 Utricularia gibba HOM05D002417 ORTHO05D002589 1.5e-10 72.8 251 27.9
Glyma.02G220700 Glycine max HOM05D002417 ORTHO05D002589 1.9e-10 72.4 310 26.8
Nitab4.5_0002867g0020 Nicotiana tabacum HOM05D002417 ORTHO05D002589 2.5e-10 72.0 266 27.8
QL09p005936 Quercus lobata HOM05D002417 ORTHO05D002589 5.5e-10 70.9 306 25.8
PGR042G2858 Punica granatum HOM05D002417 ORTHO05D002589 7.2e-10 70.5 446 24.0
TWI79G0537 Tripterygium wilfordii HOM05D002417 ORTHO05D002589 9.5e-10 70.1 263 27.4
BcaB02g09595 Brassica carinata HOM05D002417 ORTHO05D002589 1.6e-09 69.3 249 25.7
Ciclev10025105m.g Citrus clementina HOM05D002417 ORTHO05D002589 1.6e-09 69.3 482 24.1
Nn3g18739 Nelumbo nucifera HOM05D002417 ORTHO05D002589 2.1e-09 68.9 258 25.6
Actinidia08723 Actinidia chinensis HOM05D002417 ORTHO05D002589 2.8e-09 68.6 310 24.8
CsaV3_6G041860 Cucumis sativus L. HOM05D002417 ORTHO05D002589 2.8e-09 68.6 272 26.1
Lj3C891G15 Lonicera japonica HOM05D002417 ORTHO05D002589 2.8e-09 68.6 258 24.8
SGA_v2.0_scaffold18G08498 Striga asiatica HOM05D002417 ORTHO05D002589 2.8e-09 68.6 249 24.9
MELO3C008035.2 Cucumis melo HOM05D002417 ORTHO05D002589 3.6e-09 68.2 274 26.3
MD07G1303800 Malus domestica HOM05D002417 ORTHO05D002589 3.6e-09 68.2 505 23.8
TAR375G1123 Trochodendron aralioides HOM05D002417 ORTHO05D002589 4.7e-09 67.8 250 25.6
ClCG01G015640 Citrullus lanatus HOM05D002417 ORTHO05D002589 6.1e-09 67.4 275 26.2
Aa31LG8G5580 Aethionema arabicum HOM05D002417 ORTHO05D002589 1.0e-08 66.6 302 25.8
BcaB02g09596 Brassica carinata HOM05D002417 ORTHO05D002589 1.0e-08 66.6 249 25.3
Ah.03g146650 Amaranthus hybridus HOM05D002417 ORTHO05D002589 1.4e-08 66.2 268 25.4
HanXRQChr14g0445881 Helianthus annuus HOM05D002417 ORTHO05D002589 1.4e-08 66.2 281 26.3
FAN10G1251 Fragaria x ananassa HOM05D002417 ORTHO05D002589 1.8e-08 65.9 456 23.7
Nitab4.5_0000115g0180 Nicotiana tabacum HOM05D002417 ORTHO05D002589 2.3e-08 65.5 258 25.6
Peaxi162Scf00815g00227 Petunia axillaris HOM05D002417 ORTHO05D002589 3.0e-08 65.1 262 25.2
Thecc.01G122600 Theobroma cacao HOM05D002417 ORTHO05D002589 3.0e-08 65.1 325 24.0
Actinidia34290 Actinidia chinensis HOM05D002417 ORTHO05D002589 4.0e-08 64.7 308 23.7
Sed0014649 Sechium edule HOM05D002417 ORTHO05D002589 4.0e-08 64.7 269 25.3
Gohir.D04G028700 Gossypium hirsutum HOM05D002417 ORTHO05D002589 5.2e-08 64.3 326 24.2
DCAR_020391 Daucus carota HOM05D002417 ORTHO05D002589 6.8e-08 63.9 259 23.9
Phvul.008G187800 Phaseolus vulgaris HOM05D002417 ORTHO05D002589 6.8e-08 63.9 317 26.5
Hund28304 Selenicereus undatus HOM05D002417 ORTHO05D002589 6.8e-08 63.9 269 25.3
Hund28306 Selenicereus undatus HOM05D002417 ORTHO05D002589 6.8e-08 63.9 269 25.3
arahy.Tifrunner.gnm1.ann1.B3C57W Arachis hypogaea HOM05D002417 ORTHO05D002589 1.2e-07 63.2 493 26.2
CAN.G65.141 Capsicum annuum HOM05D002417 ORTHO05D002589 1.2e-07 63.2 258 26.0
CARHR158600 Cardamine hirsuta HOM05D002417 ORTHO05D002589 1.2e-07 63.2 305 24.3
Duzib147G0500 Durio zibethinus HOM05D002417 ORTHO05D002589 1.2e-07 63.2 424 24.3
Gohir.A05G388000 Gossypium hirsutum HOM05D002417 ORTHO05D002589 1.2e-07 63.2 384 24.2
Aa31LG4G18080 Aethionema arabicum HOM05D002417 ORTHO05D002589 1.5e-07 62.8 250 22.8
Potri.001G309800 Populus trichocarpa HOM05D002417 ORTHO05D002589 1.5e-07 62.8 380 25.5
Sabra12G0000300 Salix brachista HOM05D002417 ORTHO05D002589 1.5e-07 62.8 462 23.6
Sp3g16840 Schrenkiella parvula HOM05D002417 ORTHO05D002589 1.5e-07 62.8 292 26.0
PSO782G2626 Papaver somniferum HOM05D002417 ORTHO05D002589 2.0e-07 62.4 457 26.5
TAR376G0313 Trochodendron aralioides HOM05D002417 ORTHO05D002589 2.0e-07 62.4 264 27.3
AL3G32120 Arabidopsis lyrata HOM05D002417 ORTHO05D002589 2.6e-07 62.0 296 24.7
Carub.0003s1856 Capsella rubella HOM05D002417 ORTHO05D002589 3.4e-07 61.6 291 24.7
Cc02_g00570 Coffea canephora HOM05D002417 ORTHO05D002589 3.4e-07 61.6 250 25.6
Thhalv10020300m.g Eutrema salsugineum HOM05D002417 ORTHO05D002589 3.4e-07 61.6 291 25.4
Gorai.012G031400 Gossypium raimondii HOM05D002417 ORTHO05D002589 3.4e-07 61.6 377 23.9
FvH4_1g23440 Fragaria vesca HOM05D002417 ORTHO05D002589 4.4e-07 61.2 268 25.4
FAN23G0092 Fragaria x ananassa HOM05D002417 ORTHO05D002589 4.4e-07 61.2 268 25.4
FAN26G0337 Fragaria x ananassa HOM05D002417 ORTHO05D002589 4.4e-07 61.2 286 24.8
FAN28G0705 Fragaria x ananassa HOM05D002417 ORTHO05D002589 4.4e-07 61.2 268 25.4
TWI31G0929 Tripterygium wilfordii HOM05D002417 ORTHO05D002589 4.4e-07 61.2 463 24.6
Eucgr.H04916 Eucalyptus grandis HOM05D002417 ORTHO05D002589 5.7e-07 60.8 326 23.6
FAN10G4089 Fragaria x ananassa HOM05D002417 ORTHO05D002589 5.7e-07 60.8 456 23.0
SGA_v2.0_scaffold137G35127 Striga asiatica HOM05D002417 ORTHO05D002589 5.7e-07 60.8 292 24.3
AUR62003616 Chenopodium quinoa HOM05D002417 ORTHO05D002589 7.5e-07 60.5 267 24.7
AUR62017927 Chenopodium quinoa HOM05D002417 ORTHO05D002589 7.5e-07 60.5 267 24.7
FAN19G0028 Fragaria x ananassa HOM05D002417 ORTHO05D002589 7.5e-07 60.5 266 25.6
PGR119G2105 Punica granatum HOM05D002417 ORTHO05D002589 7.5e-07 60.5 298 25.2
Prupe.6G164000 Prunus persica HOM05D002417 ORTHO05D002589 9.8e-07 60.1 274 26.3
Thecc.03G212400 Theobroma cacao HOM05D002417 ORTHO05D002589 9.8e-07 60.1 467 24.2
CARHR094160 Cardamine hirsuta HOM05D002417 ORTHO05D002589 1.3e-06 59.7 297 24.6
ECA238G1662 Erigeron canadensis HOM05D002417 ORTHO05D002589 1.3e-06 59.7 283 24.0
ATR0579G059 Amborella trichopoda HOM05D002417 ORTHO05D002589 1.7e-06 59.3 310 25.5
Lsat_1_v5_gn_2_66680 Lactuca sativa HOM05D002417 ORTHO05D002589 1.7e-06 59.3 318 22.3
LjContig00155g0013710 Lotus japonicus HOM05D002417 ORTHO05D002589 1.7e-06 59.3 456 24.6
Rhsim03G0218600 Rhododendron simsii HOM05D002417 ORTHO05D002589 1.7e-06 59.3 268 25.4
AT3G18770 Arabidopsis thaliana HOM05D002417 ORTHO05D002589 2.8e-06 58.5 299 24.7
DCAR_031483 Daucus carota HOM05D002417 ORTHO05D002589 2.8e-06 58.5 270 24.4
AT3G49590 Arabidopsis thaliana HOM05D002417 ORTHO05D002589 3.7e-06 58.2 246 22.8
CiPaw.03G124700 Carya illinoinensis HOM05D002417 ORTHO05D002589 3.7e-06 58.2 378 22.8
HanXRQChr15g0471681 Helianthus annuus HOM05D002417 ORTHO05D002589 3.7e-06 58.2 321 22.4
Sabra19G0024000 Salix brachista HOM05D002417 ORTHO05D002589 4.9e-06 57.8 264 23.9
BraA06t25771Z Brassica rapa HOM05D002417 ORTHO05D002589 6.3e-06 57.4 440 25.2
Gohir.D04G030000 Gossypium hirsutum HOM05D002417 ORTHO05D002589 6.3e-06 57.4 272 25.4
Gorai.012G032500 Gossypium raimondii HOM05D002417 ORTHO05D002589 8.3e-06 57.0 272 24.6
Oeu061047.1 Olea europaea HOM05D002417 ORTHO05D002589 8.3e-06 57.0 508 25.4
TWI63G1113 Tripterygium wilfordii HOM05D002417 ORTHO05D002589 8.3e-06 57.0 266 25.2


User provided reference genes

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