Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa024863 Carpinus fangiana HOM05D003979 ORTHO05D005530 0.0e+00 1215.3 612 100.0
CBR_g16971 Chara braunii HOM05D003979 ORTHO05D005530 2.8e-213 745.7 561 65.4
SMO361G0245 Selaginella moellendorffii HOM05D003979 ORTHO05D005530 1.4e-212 743.4 575 63.5
MCO11G076 Micromonas commoda HOM05D003979 ORTHO05D005530 7.0e-209 731.1 567 62.8
Pp3c11_18700 Physcomitrium patens HOM05D003979 ORTHO05D005530 3.0e-207 725.7 573 63.2
Mapoly0044s0128 Marchantia polymorpha HOM05D003979 ORTHO05D005530 1.1e-206 723.8 570 62.3
COL.COLO4_20310 Corchorus olitorius HOM05D003979 ORTHO05D005530 9.5e-206 720.7 565 62.8
ATR0787G169 Amborella trichopoda HOM05D003979 ORTHO05D005530 4.7e-205 718.4 561 62.4
Nn1g03146 Nelumbo nucifera HOM05D003979 ORTHO05D005530 4.7e-205 718.4 561 62.7
Cre03.g206600 Chlamydomonas reinhardtii HOM05D003979 ORTHO05D005530 6.2e-205 718.0 593 62.4
arahy.Tifrunner.gnm1.ann1.ZGF32Z Arachis hypogaea HOM05D003979 ORTHO05D005530 8.0e-205 717.6 597 61.0
Psat1g182280 Pisum sativum HOM05D003979 ORTHO05D005530 1.0e-204 717.2 582 61.5
Hund24848 Selenicereus undatus HOM05D003979 ORTHO05D005530 1.4e-204 716.8 563 63.2
AUR62020350 Chenopodium quinoa HOM05D003979 ORTHO05D005530 1.8e-204 716.5 567 62.1
Lalb_Chr18g0056121 Lupinus albus HOM05D003979 ORTHO05D005530 3.1e-204 715.7 569 61.9
Phvul.006G152700 Phaseolus vulgaris HOM05D003979 ORTHO05D005530 3.1e-204 715.7 597 61.0
Manes.15G050825 Manihot esculenta HOM05D003979 ORTHO05D005530 8.9e-204 714.1 564 62.8
Gohir.D02G031700 Gossypium hirsutum HOM05D003979 ORTHO05D005530 1.2e-203 713.8 577 61.5
Hma1.2p1_0691F.1_g204250 Hydrangea macrophylla HOM05D003979 ORTHO05D005530 1.2e-203 713.8 565 62.7
Gorai.005G035200 Gossypium raimondii HOM05D003979 ORTHO05D005530 1.5e-203 713.4 577 61.5
VMungo0540G1831 Vigna mungo HOM05D003979 ORTHO05D005530 1.5e-203 713.4 597 61.0
AUR62015873 Chenopodium quinoa HOM05D003979 ORTHO05D005530 2.0e-203 713.0 567 61.9
Glyma.13G207900 Glycine max HOM05D003979 ORTHO05D005530 2.0e-203 713.0 561 62.7
Gohir.A02G024400 Gossypium hirsutum HOM05D003979 ORTHO05D005530 3.4e-203 712.2 600 60.2
Duzib151G0303 Durio zibethinus HOM05D003979 ORTHO05D005530 4.4e-203 711.8 582 60.8
PSO017G0981 Papaver somniferum HOM05D003979 ORTHO05D005530 5.8e-203 711.4 574 61.5
Solyc12g043020.2 Solanum lycopersicum HOM05D003979 ORTHO05D005530 5.8e-203 711.4 565 62.5
Medtr2g089340 Medicago truncatula HOM05D003979 ORTHO05D005530 7.5e-203 711.1 561 62.6
Thecc.04G210300 Theobroma cacao HOM05D003979 ORTHO05D005530 1.3e-202 710.3 601 59.7
BcaB04g20393 Brassica carinata HOM05D003979 ORTHO05D005530 1.7e-202 709.9 567 61.7
Aqoxy2G03779 Aquilegia oxysepala HOM05D003979 ORTHO05D005530 2.2e-202 709.5 562 62.1
Sopen12g022260 Solanum pennellii HOM05D003979 ORTHO05D005530 2.2e-202 709.5 565 62.3
Sabra01G0036200 Salix brachista HOM05D003979 ORTHO05D005530 2.9e-202 709.1 561 62.7
BcaB06g26604 Brassica carinata HOM05D003979 ORTHO05D005530 3.7e-202 708.8 561 62.4
Duzib212G0229 Durio zibethinus HOM05D003979 ORTHO05D005530 3.7e-202 708.8 565 61.6
A07p08130 Brassica napus HOM05D003979 ORTHO05D005530 4.9e-202 708.4 561 62.4
BraA07t28596Z Brassica rapa HOM05D003979 ORTHO05D005530 4.9e-202 708.4 561 62.4
Ca_00636_v3 Cicer arietinum L. HOM05D003979 ORTHO05D005530 4.9e-202 708.4 561 62.2
Ca_29705_v3 Cicer arietinum L. HOM05D003979 ORTHO05D005530 4.9e-202 708.4 561 62.2
Potri.001G051700 Populus trichocarpa HOM05D003979 ORTHO05D005530 4.9e-202 708.4 561 62.4
Ah.04g166150 Amaranthus hybridus HOM05D003979 ORTHO05D005530 6.4e-202 708.0 549 64.3
PGSC0003DMG400019163 Solanum tuberosum HOM05D003979 ORTHO05D005530 6.4e-202 708.0 611 58.9
Carub.0003s2458 Capsella rubella HOM05D003979 ORTHO05D005530 8.3e-202 707.6 572 61.5
ECA233G3228 Erigeron canadensis HOM05D003979 ORTHO05D005530 8.3e-202 707.6 565 61.8
HanXRQChr14g0435331 Helianthus annuus HOM05D003979 ORTHO05D005530 8.3e-202 707.6 565 61.8
Aqoxy5G02610 Aquilegia oxysepala HOM05D003979 ORTHO05D005530 1.1e-201 707.2 562 62.3
C01p39410 Brassica napus HOM05D003979 ORTHO05D005530 1.4e-201 706.8 561 62.2
BolC1t03890H Brassica oleracea HOM05D003979 ORTHO05D005530 1.4e-201 706.8 561 62.2
TAR365G0531 Trochodendron aralioides HOM05D003979 ORTHO05D005530 1.4e-201 706.8 561 61.9
EL10Ac4g07703 Beta vulgaris HOM05D003979 ORTHO05D005530 1.9e-201 706.4 595 60.3
BcaC06g35668 Brassica carinata HOM05D003979 ORTHO05D005530 1.9e-201 706.4 561 62.2
C07p12270 Brassica napus HOM05D003979 ORTHO05D005530 1.9e-201 706.4 561 62.2
Cc02_g25590 Coffea canephora HOM05D003979 ORTHO05D005530 1.9e-201 706.4 561 62.2
Lj6g0025731 Lotus japonicus HOM05D003979 ORTHO05D005530 1.9e-201 706.4 561 61.9
QL07p012465 Quercus lobata HOM05D003979 ORTHO05D005530 1.9e-201 706.4 561 62.7
PSO063G3024 Papaver somniferum HOM05D003979 ORTHO05D005530 2.4e-201 706.1 579 60.8
Solyc05g053540.3 Solanum lycopersicum HOM05D003979 ORTHO05D005530 2.4e-201 706.1 565 61.8
PGR031G0232 Punica granatum HOM05D003979 ORTHO05D005530 3.2e-201 705.7 580 60.5
Thhalv10002451m.g Eutrema salsugineum HOM05D003979 ORTHO05D005530 4.1e-201 705.3 561 62.4
Potri.003G176600 Populus trichocarpa HOM05D003979 ORTHO05D005530 5.4e-201 704.9 564 61.9
Ciclev10004565m.g Citrus clementina HOM05D003979 ORTHO05D005530 7.0e-201 704.5 603 59.7
AT3G23940 Arabidopsis thaliana HOM05D003979 ORTHO05D005530 9.2e-201 704.1 561 62.0
Cfa014896 Carpinus fangiana HOM05D003979 ORTHO05D005530 9.2e-201 704.1 575 61.2
Peaxi162Scf00073g02029 Petunia axillaris HOM05D003979 ORTHO05D005530 9.2e-201 704.1 566 61.3
Dinv38268 Davidia involucrata HOM05D003979 ORTHO05D005530 1.2e-200 703.7 565 61.9
Sc25g0005860 Simmondsia chinensis HOM05D003979 ORTHO05D005530 1.2e-200 703.7 578 61.2
Sopen05g032060 Solanum pennellii HOM05D003979 ORTHO05D005530 1.2e-200 703.7 611 58.6
Sp3g22010 Schrenkiella parvula HOM05D003979 ORTHO05D005530 1.6e-200 703.4 602 59.1
CAN.G765.2 Capsicum annuum HOM05D003979 ORTHO05D005530 2.0e-200 703.0 568 61.4
THA.LOC104808724 Tarenaya hassleriana HOM05D003979 ORTHO05D005530 2.0e-200 703.0 564 61.9
AL3G39610 Arabidopsis lyrata HOM05D003979 ORTHO05D005530 3.5e-200 702.2 561 61.7
CARHR100330 Cardamine hirsuta HOM05D003979 ORTHO05D005530 3.5e-200 702.2 561 62.0
CiPaw.02G067900 Carya illinoinensis HOM05D003979 ORTHO05D005530 3.5e-200 702.2 561 62.0
HanXRQChr02g0059571 Helianthus annuus HOM05D003979 ORTHO05D005530 3.5e-200 702.2 561 62.2
Actinidia35951 Actinidia chinensis HOM05D003979 ORTHO05D005530 4.6e-200 701.8 565 61.9
MSTRG.24631 Avicennia marina HOM05D003979 ORTHO05D005530 4.6e-200 701.8 589 60.4
BolC7t41694H Brassica oleracea HOM05D003979 ORTHO05D005530 4.6e-200 701.8 574 60.8
BraA01t03222Z Brassica rapa HOM05D003979 ORTHO05D005530 6.0e-200 701.4 561 61.9
Os08g0559600 Oryza sativa ssp. japonica HOM05D003979 ORTHO05D005530 7.8e-200 701.0 561 62.0
THA.LOC104804817 Tarenaya hassleriana HOM05D003979 ORTHO05D005530 7.8e-200 701.0 561 62.2
Migut.N00344 Erythranthe guttata HOM05D003979 ORTHO05D005530 1.0e-199 700.7 561 62.2
A01p30940 Brassica napus HOM05D003979 ORTHO05D005530 1.7e-199 699.9 561 61.9
Actinidia34623 Actinidia chinensis HOM05D003979 ORTHO05D005530 2.3e-199 699.5 584 60.6
Cc03_g07310 Coffea canephora HOM05D003979 ORTHO05D005530 3.0e-199 699.1 561 61.7
RcHm_v2.0_Chr1g0328531 Rosa chinensis HOM05D003979 ORTHO05D005530 3.0e-199 699.1 610 58.2
Aa31LG8G10930 Aethionema arabicum HOM05D003979 ORTHO05D005530 8.6e-199 697.6 572 60.7
Duzib268G0146 Durio zibethinus HOM05D003979 ORTHO05D005530 8.6e-199 697.6 600 58.5
CANSAT78G1204 Cannabis sativa HOM05D003979 ORTHO05D005530 1.1e-198 697.2 561 61.9
Zm00001eb039310 Zea mays HOM05D003979 ORTHO05D005530 1.1e-198 697.2 561 61.3
CSS0040719 Camellia sinensis var. sinensis HOM05D003979 ORTHO05D005530 1.5e-198 696.8 565 60.4
Zm00001eb175970 Zea mays HOM05D003979 ORTHO05D005530 2.5e-198 696.0 561 61.1
FvH4_7g04190 Fragaria vesca HOM05D003979 ORTHO05D005530 3.3e-198 695.7 578 59.9
FAN06G4745 Fragaria x ananassa HOM05D003979 ORTHO05D005530 5.6e-198 694.9 579 59.8
CSS0027237 Camellia sinensis var. sinensis HOM05D003979 ORTHO05D005530 7.3e-198 694.5 565 60.2
FAN01G2046 Fragaria x ananassa HOM05D003979 ORTHO05D005530 1.2e-197 693.7 561 60.6
CiPaw.01G125500 Carya illinoinensis HOM05D003979 ORTHO05D005530 1.6e-197 693.3 561 60.4
FAN10G0585 Fragaria x ananassa HOM05D003979 ORTHO05D005530 1.6e-197 693.3 608 58.2
Lsat_1_v5_gn_6_63381 Lactuca sativa HOM05D003979 ORTHO05D005530 1.6e-197 693.3 565 60.9
Sed0009934 Sechium edule HOM05D003979 ORTHO05D005530 1.6e-197 693.3 573 60.6
CsaV3_3G011200 Cucumis sativus L. HOM05D003979 ORTHO05D005530 4.7e-197 691.8 573 60.4
MELO3C006331.2 Cucumis melo HOM05D003979 ORTHO05D005530 3.1e-196 689.1 573 60.2
TAR624G0299 Trochodendron aralioides HOM05D003979 ORTHO05D005530 4.0e-196 688.7 546 62.1
ClCG05G003530 Citrullus lanatus HOM05D003979 ORTHO05D005530 6.8e-196 688.0 573 60.0
DCAR_031519 Daucus carota HOM05D003979 ORTHO05D005530 8.9e-196 687.6 589 59.4
Prupe.1G003100 Prunus persica HOM05D003979 ORTHO05D005530 1.2e-195 687.2 569 59.8
Cpa.g.sc59.101 Carica papaya HOM05D003979 ORTHO05D005530 3.4e-195 685.6 583 58.7
AUR62017196 Chenopodium quinoa HOM05D003979 ORTHO05D005530 5.8e-195 684.9 577 60.3
RhsimUnG0135800 Rhododendron simsii HOM05D003979 ORTHO05D005530 5.8e-195 684.9 598 58.4
MD04G1003600 Malus domestica HOM05D003979 ORTHO05D005530 1.3e-194 683.7 561 59.4
PRCOL_00005867 Prasinoderma coloniale HOM05D003979 ORTHO05D005530 1.7e-194 683.3 559 62.8
Haze_11573 Corylus avellana HOM05D003979 ORTHO05D005530 2.9e-194 682.6 631 56.4
Nitab4.5_0001769g0010 Nicotiana tabacum HOM05D003979 ORTHO05D005530 5.4e-193 678.3 572 59.6
Oeu022336.1 Olea europaea HOM05D003979 ORTHO05D005530 5.4e-193 678.3 588 59.0
MBI07_g21060_MAGBIO Magnolia biondii HOM05D003979 ORTHO05D005530 4.6e-192 675.2 628 55.4
GSVIVG01029073001 Vitis vinifera HOM05D003979 ORTHO05D005530 4.6e-192 675.2 531 62.3
Hund11465 Selenicereus undatus HOM05D003979 ORTHO05D005530 7.8e-192 674.5 559 60.8
arahy.Tifrunner.gnm1.ann1.NX1XST Arachis hypogaea HOM05D003979 ORTHO05D005530 6.6e-191 671.4 592 58.6
Gohir.D10G144500 Gossypium hirsutum HOM05D003979 ORTHO05D005530 2.1e-189 666.4 525 63.2
RhsimUnG0180900 Rhododendron simsii HOM05D003979 ORTHO05D005530 1.4e-188 663.7 642 54.4
AUR62010687 Chenopodium quinoa HOM05D003979 ORTHO05D005530 2.5e-182 642.9 561 58.5
Peaxi162Scf00536g00915 Petunia axillaris HOM05D003979 ORTHO05D005530 2.5e-182 642.9 561 58.5
SGA_v2.0_scaffold31G12595 Striga asiatica HOM05D003979 ORTHO05D005530 2.5e-182 642.9 545 60.0
HPP92_025762 Vanilla planifolia HOM05D003979 ORTHO05D005530 2.0e-179 633.3 531 60.8
Nitab4.5_0001066g0080 Nicotiana tabacum HOM05D003979 ORTHO05D005530 1.1e-177 627.5 508 61.4
Cfa023757 Carpinus fangiana HOM05D003979 ORTHO05D005530 5.3e-172 608.6 603 53.2
AagrBONN_evm.TU.Sc2ySwM_228.3337 Anthoceros agrestis HOM05D003979 ORTHO05D005530 1.7e-170 603.6 510 60.6
SMO361G0819 Selaginella moellendorffii HOM05D003979 ORTHO05D005530 6.4e-170 601.7 494 60.7
Lj6C614G9 Lonicera japonica HOM05D003979 ORTHO05D005530 2.1e-168 596.7 626 51.0
TWI09G0393 Tripterygium wilfordii HOM05D003979 ORTHO05D005530 1.8e-167 593.6 609 52.2
Gorai.011G161400 Gossypium raimondii HOM05D003979 ORTHO05D005530 1.4e-164 583.9 581 53.9
unitig_899.g15534 Utricularia gibba HOM05D003979 ORTHO05D005530 1.2e-155 554.3 494 58.9
QL06p023475 Quercus lobata HOM05D003979 ORTHO05D005530 3.0e-151 539.7 454 60.4
HPP92_025735 Vanilla planifolia HOM05D003979 ORTHO05D005530 1.0e-146 524.6 494 56.5
CDE04G1626 Ceratophyllum demersum HOM05D003979 ORTHO05D005530 2.5e-145 520.0 437 60.9
SEGI_04002 Sequoiadendron giganteum HOM05D003979 ORTHO05D005530 4.6e-144 515.8 437 58.6
Gohir.A10G121600 Gossypium hirsutum HOM05D003979 ORTHO05D005530 2.2e-141 506.9 430 58.8
HPP92_025731 Vanilla planifolia HOM05D003979 ORTHO05D005530 8.2e-141 505.0 427 60.9
vmacro00507 Vaccinium macrocarpon HOM05D003979 ORTHO05D005530 1.6e-128 464.2 403 58.6
Atru.chr4.1774 Acer truncatum HOM05D003979 ORTHO05D005530 1.4e-119 434.5 437 52.4
Eucgr.H02826 Eucalyptus grandis HOM05D003979 ORTHO05D005530 8.5e-114 415.2 316 63.9
QL07p030448 Quercus lobata HOM05D003979 ORTHO05D000106 1.6e-99 367.9 386 51.0
HanXRQChr14g0435341 Helianthus annuus HOM05D003979 ORTHO05D005530 6.2e-88 329.3 230 67.0
Eucgr.C02488 Eucalyptus grandis HOM05D003979 ORTHO05D005530 1.2e-83 315.1 341 50.7
Manes.03G150102 Manihot esculenta HOM05D003979 ORTHO05D005530 6.4e-69 266.2 279 51.3
Cfa023448 Carpinus fangiana HOM05D003979 ORTHO05D123299 3.0e-66 257.3 557 31.4
CAN.G12.22 Capsicum annuum HOM05D003979 ORTHO05D005530 1.6e-59 235.0 151 70.9
vmacro00506 Vaccinium macrocarpon HOM05D003979 ORTHO05D005530 1.0e-58 232.3 147 71.4
TPR.G30672 Trifolium pratense HOM05D003979 ORTHO05D005530 4.5e-54 216.9 218 53.7
QL07p012436 Quercus lobata HOM05D003979 ORTHO05D005530 2.0e-46 191.4 125 71.2
Eucgr.H02825 Eucalyptus grandis HOM05D003979 ORTHO05D015566 5.5e-44 183.3 150 58.7
Cfa020039 Carpinus fangiana HOM05D003979 ORTHO05D015566 3.3e-41 174.1 128 63.3
Duzib268G0265 Durio zibethinus HOM05D003979 ORTHO05D015566 2.8e-40 171.0 128 61.7
Gohir.D02G124900 Gossypium hirsutum HOM05D003979 ORTHO05D005530 1.5e-38 165.2 105 70.5
Gorai.005G140500 Gossypium raimondii HOM05D003979 ORTHO05D005530 6.5e-37 159.8 129 58.9
QL06p023466 Quercus lobata HOM05D003979 ORTHO05D015566 3.5e-35 154.1 114 62.3
PGSC0003DMG400028636 Solanum tuberosum HOM05D003979 ORTHO05D015566 1.8e-34 151.8 114 63.2
Eucgr.C02482 Eucalyptus grandis HOM05D003979 ORTHO05D015566 8.2e-32 142.9 114 59.6
THA.LOC104809102 Tarenaya hassleriana HOM05D003979 ORTHO05D049433 1.1e-31 142.5 115 61.7
Oeu022341.1 Olea europaea HOM05D003979 ORTHO05D049433 1.8e-31 141.7 120 59.2
Lsat_1_v5_gn_4_162440 Lactuca sativa HOM05D003979 ORTHO05D015566 3.8e-29 134.0 110 62.7
CDE04G0146 Ceratophyllum demersum HOM05D003979 ORTHO05D005530 2.1e-27 128.3 97 61.9
Oeu006718.2 Olea europaea HOM05D003979 ORTHO05D005530 8.2e-24 116.3 102 58.8
TWI36G0080 Tripterygium wilfordii HOM05D003979 ORTHO05D005530 6.9e-23 113.2 106 53.8
TPR.G30661 Trifolium pratense HOM05D003979 ORTHO05D005530 2.6e-22 111.3 185 39.5
CAN.G12.21 Capsicum annuum HOM05D003979 ORTHO05D015566 4.2e-20 104.0 59 79.7
Lsat_1_v5_gn_5_133441 Lactuca sativa HOM05D003979 ORTHO05D015566 2.7e-19 101.3 117 47.9
SMO361G0618 Selaginella moellendorffii HOM05D003979 ORTHO05D015566 5.3e-15 87.0 219 31.1
Aqoxy226s001 Aquilegia oxysepala HOM05D004107 ORTHO05D004738 2.6e-14 84.7 118 38.1
CAN.G12.20 Capsicum annuum HOM05D003979 ORTHO05D015566 5.5e-12 77.0 68 54.4
HPP92_025734 Vanilla planifolia HOM05D003979 ORTHO05D005530 2.2e-08 65.1 43 69.8
TPR.G35859 Trifolium pratense HOM05D003979 ORTHO05D015566 2.4e-07 61.6 56 58.9


User provided reference genes

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