Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa024711 Carpinus fangiana HOM05D004312 ORTHO05D122356 0.0e+00 1483.4 786 100.0
Zm00001eb416950 Zea mays HOM05D004312 ORTHO05D005394 6.2e-16 90.5 204 25.5
BcaC05g28288 Brassica carinata HOM05D004312 ORTHO05D005394 1.2e-14 86.3 217 28.1
BolC5t33070H Brassica oleracea HOM05D004312 ORTHO05D005394 1.2e-14 86.3 217 28.1
C05p43470 Brassica napus HOM05D004312 ORTHO05D005394 2.6e-14 85.1 220 27.7
BraA05t21689Z Brassica rapa HOM05D004312 ORTHO05D005394 2.6e-14 85.1 217 27.6
PRCOL_00001232 Prasinoderma coloniale HOM05D004312 ORTHO05D005394 2.6e-14 85.1 315 23.5
A05p28070 Brassica napus HOM05D004312 ORTHO05D005394 4.4e-14 84.3 217 27.6
Mapoly0006s0078 Marchantia polymorpha HOM05D004312 ORTHO05D005394 9.9e-14 83.2 207 26.1
Os08g0137250 Oryza sativa ssp. japonica HOM05D004312 ORTHO05D005394 3.8e-13 81.3 314 21.7
BcaB06g26144 Brassica carinata HOM05D004312 ORTHO05D005394 8.4e-13 80.1 205 25.4
BcaC09g49015 Brassica carinata HOM05D004312 ORTHO05D005394 1.1e-12 79.7 233 26.2
BolC1t04310H Brassica oleracea HOM05D004312 ORTHO05D005394 1.1e-12 79.7 233 26.2
BcaB04g20634 Brassica carinata HOM05D004312 ORTHO05D005394 1.4e-12 79.3 233 26.2
A01p34090 Brassica napus HOM05D004312 ORTHO05D005394 1.4e-12 79.3 233 26.2
BraA01t03513Z Brassica rapa HOM05D004312 ORTHO05D005394 1.4e-12 79.3 233 26.2
C01p43500 Brassica napus HOM05D004312 ORTHO05D005394 1.9e-12 79.0 233 26.2
BolC5t33065H Brassica oleracea HOM05D004312 ORTHO05D005394 1.9e-12 79.0 209 25.4
PSO384G4488 Papaver somniferum HOM05D004312 ORTHO05D005394 1.9e-12 79.0 210 25.7
AL3G34660 Arabidopsis lyrata HOM05D004312 ORTHO05D005394 2.4e-12 78.6 217 25.3
Zm00001eb173090 Zea mays HOM05D004312 ORTHO05D005394 4.1e-12 77.8 207 23.2
Thhalv10020971m.g Eutrema salsugineum HOM05D004312 ORTHO05D005394 5.4e-12 77.4 217 25.3
Sed0007148 Sechium edule HOM05D004312 ORTHO05D005394 5.4e-12 77.4 217 24.0
unitig_746.g26649 Utricularia gibba HOM05D004312 ORTHO05D005394 5.4e-12 77.4 217 23.5
AT3G20740 Arabidopsis thaliana HOM05D004312 ORTHO05D005394 7.1e-12 77.0 205 24.9
CANSAT25G0949 Cannabis sativa HOM05D004312 ORTHO05D005394 7.1e-12 77.0 204 24.5
PSO541G5632 Papaver somniferum HOM05D004312 ORTHO05D005394 7.1e-12 77.0 217 22.6
BraA05t21685Z Brassica rapa HOM05D004312 ORTHO05D005394 9.2e-12 76.6 205 24.9
Pp3c24_1010 Physcomitrium patens HOM05D004312 ORTHO05D005394 9.2e-12 76.6 201 29.4
Psat6g038960 Pisum sativum HOM05D004312 ORTHO05D005394 9.2e-12 76.6 204 23.5
QL08p013340 Quercus lobata HOM05D004312 ORTHO05D005394 9.2e-12 76.6 204 23.5
Sp3g18760 Schrenkiella parvula HOM05D004312 ORTHO05D005394 9.2e-12 76.6 217 25.3
BcaC05g28285 Brassica carinata HOM05D004312 ORTHO05D005394 1.2e-11 76.3 205 24.4
A05p28030 Brassica napus HOM05D004312 ORTHO05D005394 1.2e-11 76.3 205 24.4
MELO3C018124.2 Cucumis melo HOM05D004312 ORTHO05D005394 1.2e-11 76.3 217 23.5
CsaV3_3G022910 Cucumis sativus L. HOM05D004312 ORTHO05D005394 1.2e-11 76.3 217 23.5
Gohir.D13G146100 Gossypium hirsutum HOM05D004312 ORTHO05D005394 1.2e-11 76.3 204 23.5
Duzib213G0708 Durio zibethinus HOM05D004312 ORTHO05D005394 1.6e-11 75.9 204 23.5
Gohir.A13G141400 Gossypium hirsutum HOM05D004312 ORTHO05D005394 1.6e-11 75.9 204 23.5
Gorai.013G163900 Gossypium raimondii HOM05D004312 ORTHO05D005394 1.6e-11 75.9 204 23.5
PSO675G7739 Papaver somniferum HOM05D004312 ORTHO05D005394 1.6e-11 75.9 217 22.6
Thecc.07G052900 Theobroma cacao HOM05D004312 ORTHO05D005394 1.6e-11 75.9 204 23.0
Haze_27219 Corylus avellana HOM05D004312 ORTHO05D005394 2.1e-11 75.5 209 30.6
Lalb_Chr14g0366111 Lupinus albus HOM05D004312 ORTHO05D005394 2.1e-11 75.5 207 24.2
Os08g0137100 Oryza sativa ssp. japonica HOM05D004312 ORTHO05D005394 2.1e-11 75.5 204 25.0
Ciclev10008697m.g Citrus clementina HOM05D004312 ORTHO05D005394 2.7e-11 75.1 204 23.5
PGR031G3547 Punica granatum HOM05D004312 ORTHO05D005394 2.7e-11 75.1 217 24.0
ATR0073G014 Amborella trichopoda HOM05D004312 ORTHO05D005394 3.5e-11 74.7 204 23.0
AagrBONN_evm.TU.Sc2ySwM_117.25 Anthoceros agrestis HOM05D004312 ORTHO05D005394 3.5e-11 74.7 204 25.0
Cfa020416 Carpinus fangiana HOM05D004312 ORTHO05D005394 3.5e-11 74.7 204 23.0
DCAR_006577 Daucus carota HOM05D004312 ORTHO05D005394 3.5e-11 74.7 204 23.0
SEGI_02518 Sequoiadendron giganteum HOM05D004312 ORTHO05D005394 3.5e-11 74.7 204 23.0
Carub.0003s2070 Capsella rubella HOM05D004312 ORTHO05D005394 4.6e-11 74.3 217 24.9
CiPaw.11G183600 Carya illinoinensis HOM05D004312 ORTHO05D005394 4.6e-11 74.3 204 22.5
Cc05_g13230 Coffea canephora HOM05D004312 ORTHO05D005394 4.6e-11 74.3 204 23.0
MD03G1211700 Malus domestica HOM05D004312 ORTHO05D005394 4.6e-11 74.3 217 23.5
THA.LOC104825403 Tarenaya hassleriana HOM05D004312 ORTHO05D005394 6.0e-11 73.9 204 23.0
Medtr1g028310 Medicago truncatula HOM05D004312 ORTHO05D005394 7.8e-11 73.6 204 23.0
Ca_12696_v3 Cicer arietinum L. HOM05D004312 ORTHO05D005394 1.0e-10 73.2 204 22.5
FAN25G1427 Fragaria x ananassa HOM05D004312 ORTHO05D005394 1.0e-10 73.2 217 23.0
Lj3g0015514 Lotus japonicus HOM05D004312 ORTHO05D005394 1.0e-10 73.2 204 23.0
QL08p013781 Quercus lobata HOM05D004312 ORTHO05D005394 1.0e-10 73.2 204 22.5
MSTRG.6890 Avicennia marina HOM05D004312 ORTHO05D005394 1.3e-10 72.8 217 22.6
Glyma.10G022000 Glycine max HOM05D004312 ORTHO05D005394 1.3e-10 72.8 204 23.5
MD11G1227100 Malus domestica HOM05D004312 ORTHO05D005394 1.3e-10 72.8 217 23.0
Solyc07g064090.3 Solanum lycopersicum HOM05D004312 ORTHO05D005394 1.3e-10 72.8 204 22.5
Sopen07g032230 Solanum pennellii HOM05D004312 ORTHO05D005394 1.3e-10 72.8 204 22.5
Aa31LG8G7480 Aethionema arabicum HOM05D004312 ORTHO05D005394 1.7e-10 72.4 219 23.7
DCAR_008679 Daucus carota HOM05D004312 ORTHO05D005394 1.7e-10 72.4 204 23.5
Lsat_1_v5_gn_7_108381 Lactuca sativa HOM05D004312 ORTHO05D005394 1.7e-10 72.4 217 24.0
PSO339G5963 Papaver somniferum HOM05D004312 ORTHO05D005394 1.7e-10 72.4 205 23.4
SGA_v2.0_scaffold9G04799 Striga asiatica HOM05D004312 ORTHO05D005394 1.7e-10 72.4 217 22.6
TWI39G0013 Tripterygium wilfordii HOM05D004312 ORTHO05D005394 1.7e-10 72.4 195 24.1
CARHR096560 Cardamine hirsuta HOM05D004312 ORTHO05D005394 2.3e-10 72.0 205 25.4
ECA236G2119 Erigeron canadensis HOM05D004312 ORTHO05D005394 2.3e-10 72.0 217 23.0
HanXRQChr11g0332981 Helianthus annuus HOM05D004312 ORTHO05D005394 2.3e-10 72.0 217 23.0
Manes.15G076500 Manihot esculenta HOM05D004312 ORTHO05D005394 2.3e-10 72.0 204 22.1
Nitab4.5_0009192g0020 Nicotiana tabacum HOM05D004312 ORTHO05D005394 2.3e-10 72.0 217 22.6
Potri.001G417300 Populus trichocarpa HOM05D004312 ORTHO05D005394 2.3e-10 72.0 204 22.5
RcHm_v2.0_Chr5g0037411 Rosa chinensis HOM05D004312 ORTHO05D005394 2.3e-10 72.0 217 23.0
SMO347G0342 Selaginella moellendorffii HOM05D004312 ORTHO05D005394 2.3e-10 72.0 198 26.3
PGSC0003DMG401019226 Solanum tuberosum HOM05D004312 ORTHO05D005394 2.3e-10 72.0 204 22.1
Actinidia35316 Actinidia chinensis HOM05D004312 ORTHO05D005394 3.0e-10 71.6 204 23.0
FvH4_3g21810 Fragaria vesca HOM05D004312 ORTHO05D005394 3.0e-10 71.6 217 22.6
FAN11G3136 Fragaria x ananassa HOM05D004312 ORTHO05D005394 3.0e-10 71.6 217 22.6
Phvul.007G166700 Phaseolus vulgaris HOM05D004312 ORTHO05D005394 3.0e-10 71.6 195 24.6
COL.COLO4_09570 Corchorus olitorius HOM05D004312 ORTHO05D005394 3.9e-10 71.2 195 23.1
Glyma.02G152200 Glycine max HOM05D004312 ORTHO05D005394 3.9e-10 71.2 204 23.0
HanXRQChr15g0495681 Helianthus annuus HOM05D004312 ORTHO05D005394 3.9e-10 71.2 217 23.0
Nitab4.5_0000397g0030 Nicotiana tabacum HOM05D004312 ORTHO05D005394 3.9e-10 71.2 217 22.6
VMungo1215G3096 Vigna mungo HOM05D004312 ORTHO05D005394 3.9e-10 71.2 204 23.5
Cpa.g.sc97.70 Carica papaya HOM05D004312 ORTHO05D005394 5.1e-10 70.9 204 22.1
HPP92_002196 Vanilla planifolia HOM05D004312 ORTHO05D005394 5.1e-10 70.9 204 22.5
Cre16.g693750 Chlamydomonas reinhardtii HOM05D004312 ORTHO05D005394 6.6e-10 70.5 83 37.3
Lj8A165T113 Lonicera japonica HOM05D004312 ORTHO05D005394 6.6e-10 70.5 204 22.5
TPR.G33318 Trifolium pratense HOM05D004312 ORTHO05D005394 6.6e-10 70.5 204 22.5
EL10Ac4g07972 Beta vulgaris HOM05D004312 ORTHO05D005394 8.6e-10 70.1 200 23.0
AUR62015644 Chenopodium quinoa HOM05D004312 ORTHO05D005394 8.6e-10 70.1 204 22.5
AUR62020555 Chenopodium quinoa HOM05D004312 ORTHO05D005394 8.6e-10 70.1 204 22.5
Sc07g0002710 Simmondsia chinensis HOM05D004312 ORTHO05D005394 8.6e-10 70.1 204 22.5
vmacro09746 Vaccinium macrocarpon HOM05D004312 ORTHO05D005394 8.6e-10 70.1 204 22.1
Dinv22305 Davidia involucrata HOM05D004312 ORTHO05D005394 1.1e-09 69.7 204 22.1
Migut.M01812 Erythranthe guttata HOM05D004312 ORTHO05D005394 1.1e-09 69.7 204 21.6
Eucgr.F03425 Eucalyptus grandis HOM05D004312 ORTHO05D005394 1.1e-09 69.7 204 22.5
FAN21G3328 Fragaria x ananassa HOM05D004312 ORTHO05D005394 1.1e-09 69.7 208 22.6
Atru.chr2.3209 Acer truncatum HOM05D004312 ORTHO05D005394 1.5e-09 69.3 204 22.1
Glyma.13G287200 Glycine max HOM05D004312 ORTHO05D005394 1.5e-09 69.3 208 24.0
MBI18_g30687_MAGBIO Magnolia biondii HOM05D004312 ORTHO05D005394 1.5e-09 69.3 204 21.6
Nn1g06998 Nelumbo nucifera HOM05D004312 ORTHO05D005394 1.9e-09 68.9 204 21.6
Haze_09609 Corylus avellana HOM05D004312 ORTHO05D005394 3.3e-09 68.2 201 23.9
Hma1.2p1_1549F.1_g290070 Hydrangea macrophylla HOM05D004312 ORTHO05D005394 3.3e-09 68.2 204 21.6
CSS0011160 Camellia sinensis var. sinensis HOM05D004312 ORTHO05D005394 4.3e-09 67.8 204 22.1
Peaxi162Scf01086g00145 Petunia axillaris HOM05D004312 ORTHO05D005394 4.3e-09 67.8 208 22.6
GSVIVG01014605001 Vitis vinifera HOM05D004312 ORTHO05D005394 4.3e-09 67.8 204 22.1
Lalb_Chr14g0366131 Lupinus albus HOM05D004312 ORTHO05D005394 5.6e-09 67.4 207 21.7
Phvul.005G091500 Phaseolus vulgaris HOM05D004312 ORTHO05D005394 5.6e-09 67.4 204 21.6
arahy.Tifrunner.gnm1.ann1.IBM9RL Arachis hypogaea HOM05D004312 ORTHO05D005394 9.6e-09 66.6 204 21.1
arahy.Tifrunner.gnm1.ann1.Z28QK4 Arachis hypogaea HOM05D004312 ORTHO05D005394 9.6e-09 66.6 204 21.1
CDE05G1308 Ceratophyllum demersum HOM05D004312 ORTHO05D005394 1.2e-08 66.2 204 21.6
ClCG05G014780 Citrullus lanatus HOM05D004312 ORTHO05D005394 1.2e-08 66.2 191 22.0
MCO04G236 Micromonas commoda HOM05D004312 ORTHO05D005394 2.1e-08 65.5 233 25.3
TAR624G0412 Trochodendron aralioides HOM05D004312 ORTHO05D005394 2.8e-08 65.1 204 21.1
BcaB06g26146 Brassica carinata HOM05D004312 ORTHO05D005394 3.6e-08 64.7 216 25.9
Aqoxy6G01703 Aquilegia oxysepala HOM05D004312 ORTHO05D005394 4.7e-08 64.3 195 21.5
QL08p013465 Quercus lobata HOM05D004312 ORTHO05D005394 4.7e-08 64.3 191 21.5
BcaC05g28287 Brassica carinata HOM05D004312 ORTHO05D005394 2.4e-07 62.0 226 21.7
RhsimUnG0253200 Rhododendron simsii HOM05D004312 ORTHO05D005394 2.4e-07 62.0 199 24.1
SalBow3G2463 Salvia bowleyana HOM05D004312 ORTHO05D005394 2.4e-07 62.0 103 27.2
Hund23308 Selenicereus undatus HOM05D004312 ORTHO05D005394 2.4e-07 62.0 150 23.3
Hma1.2p1_0562F.1_g179020 Hydrangea macrophylla HOM05D004312 ORTHO05D005394 3.1e-07 61.6 203 20.2
Sabra16G0283500 Salix brachista HOM05D004312 ORTHO05D005394 3.1e-07 61.6 182 22.0
BolC5t33069H Brassica oleracea HOM05D004312 ORTHO05D005394 4.0e-07 61.2 196 21.4
ECA248G0259 Erigeron canadensis HOM05D003081 ORTHO05D003627 4.0e-07 61.2 146 31.5
SalBow1G0135 Salvia bowleyana HOM05D004312 ORTHO05D005394 4.0e-07 61.2 103 26.2
Prupe.4G202200 Prunus persica HOM05D004312 ORTHO05D005394 6.9e-07 60.5 185 22.2
Glyma.12G214400 Glycine max HOM05D004312 ORTHO05D005394 1.2e-06 59.7 145 24.8
SHI10526 Sapria himalayana HOM05D001610 ORTHO05D001585 1.2e-06 59.7 65 36.9
Dinv11944 Davidia involucrata HOM05D001610 ORTHO05D001585 1.5e-06 59.3 71 43.7
FAN05G0117 Fragaria x ananassa HOM05D004386 ORTHO05D005247 1.5e-06 59.3 81 32.1
CBR_g21046 Chara braunii HOM05D004312 ORTHO05D005394 2.0e-06 58.9 149 27.5
Cre17.g723450 Chlamydomonas reinhardtii HOM05D010245 ORTHO05D017828 2.0e-06 58.9 112 33.0
FvH4_2g20210 Fragaria vesca HOM05D003081 ORTHO05D003627 2.0e-06 58.9 100 35.0
FAN24G1556 Fragaria x ananassa HOM05D003081 ORTHO05D003627 2.0e-06 58.9 100 35.0
Psat6g148200 Pisum sativum HOM05D002288 ORTHO05D002894 3.4e-06 58.2 119 31.1
RcHm_v2.0_Chr6g0285981 Rosa chinensis HOM05D003081 ORTHO05D003627 3.4e-06 58.2 100 33.0
EL10Ac3g04947 Beta vulgaris HOM05D003335 ORTHO05D003853 5.8e-06 57.4 75 29.3
C05p43330 Brassica napus HOM05D004312 ORTHO05D005394 5.8e-06 57.4 162 26.5
Hma1.2p1_0513F.1_g169660 Hydrangea macrophylla HOM05D001610 ORTHO05D001585 5.8e-06 57.4 82 39.0
Thecc.01G246900 Theobroma cacao HOM05D003081 ORTHO05D003627 5.8e-06 57.4 83 34.9
Aa31LG8G7490 Aethionema arabicum HOM05D004312 ORTHO05D005394 7.6e-06 57.0 94 25.5
A05p28060 Brassica napus HOM05D004312 ORTHO05D005394 7.6e-06 57.0 160 24.4
HPP92_013911 Vanilla planifolia HOM05D001610 ORTHO05D001585 7.6e-06 57.0 63 42.9
HPP92_013921 Vanilla planifolia HOM05D001610 ORTHO05D001585 7.6e-06 57.0 63 42.9
arahy.Tifrunner.gnm1.ann1.08T3T7 Arachis hypogaea HOM05D004312 ORTHO05D005394 9.9e-06 56.6 181 18.8
arahy.Tifrunner.gnm1.ann1.43SLKT Arachis hypogaea HOM05D004312 ORTHO05D005394 9.9e-06 56.6 181 18.8
FAN27G1162 Fragaria x ananassa HOM05D003081 ORTHO05D003627 9.9e-06 56.6 100 33.0


User provided reference genes

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