Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa024551 Carpinus fangiana HOM05D005016 ORTHO05D005740 2.4e-240 835.1 431 100.0
Cre14.g632783 Chlamydomonas reinhardtii HOM05D005016 ORTHO05D005740 4.6e-13 80.1 220 31.4
CBR_g29551 Chara braunii HOM05D005016 ORTHO05D005740 7.3e-11 72.8 256 28.1
PRCOL_00002163 Prasinoderma coloniale HOM05D005016 ORTHO05D005740 1.4e-09 68.6 130 37.7
HPP92_024286 Vanilla planifolia HOM05D005016 ORTHO05D005740 1.4e-09 68.6 366 22.4
THA.LOC104818706 Tarenaya hassleriana HOM05D005016 ORTHO05D005740 1.8e-09 68.2 270 25.6
Mapoly0001s0195 Marchantia polymorpha HOM05D005016 ORTHO05D005740 3.1e-09 67.4 276 25.7
AL6G39410 Arabidopsis lyrata HOM05D005016 ORTHO05D005740 4.0e-09 67.0 364 23.4
Sp2g20780 Schrenkiella parvula HOM05D005016 ORTHO05D005740 4.0e-09 67.0 364 22.0
PSO170G0092 Papaver somniferum HOM05D005016 ORTHO05D005740 5.2e-09 66.6 270 23.3
HPP92_024312 Vanilla planifolia HOM05D005016 ORTHO05D005740 5.2e-09 66.6 366 22.1
Cc02_g33260 Coffea canephora HOM05D005016 ORTHO05D005740 1.5e-08 65.1 270 25.9
Nn4g24543 Nelumbo nucifera HOM05D005016 ORTHO05D005740 1.5e-08 65.1 370 21.9
Ah.04g160380 Amaranthus hybridus HOM05D005016 ORTHO05D005740 2.0e-08 64.7 370 22.4
BcaC03g17793 Brassica carinata HOM05D001965 ORTHO05D005740 2.0e-08 64.7 360 21.7
Os03g0737600 Oryza sativa ssp. japonica HOM05D005016 ORTHO05D005740 2.0e-08 64.7 370 23.5
Carub.0006s2497 Capsella rubella HOM05D005016 ORTHO05D005740 2.6e-08 64.3 360 22.2
CARHR186150 Cardamine hirsuta HOM05D005016 ORTHO05D005740 2.6e-08 64.3 364 22.0
Thhalv10004554m.g Eutrema salsugineum HOM05D005016 ORTHO05D005740 2.6e-08 64.3 364 22.5
SMO367G1055 Selaginella moellendorffii HOM05D005016 ORTHO05D005740 2.6e-08 64.3 369 24.7
Thecc.05G310100 Theobroma cacao HOM05D005016 ORTHO05D005740 2.6e-08 64.3 371 23.5
GSVIVG01031086001 Vitis vinifera HOM05D005016 ORTHO05D005740 3.4e-08 63.9 368 23.1
Pp3c5_10610 Physcomitrium patens HOM05D005016 ORTHO05D005740 5.8e-08 63.2 374 23.0
Aa31LG11G9370 Aethionema arabicum HOM05D001965 ORTHO05D005740 9.9e-08 62.4 270 24.8
BolC2t11886H Brassica oleracea HOM05D001965 ORTHO05D005740 9.9e-08 62.4 363 21.5
Dinv09444 Davidia involucrata HOM05D005016 ORTHO05D005740 9.9e-08 62.4 368 23.6
Mapoly0138s0006 Marchantia polymorpha HOM05D005016 ORTHO05D005740 9.9e-08 62.4 283 24.7
THA.LOC104821717 Tarenaya hassleriana HOM05D005016 ORTHO05D005740 1.3e-07 62.0 112 33.0
BraA02t08844Z Brassica rapa HOM05D001965 ORTHO05D005740 1.7e-07 61.6 264 24.6
Gohir.D11G276400 Gossypium hirsutum HOM05D005016 ORTHO05D005740 1.7e-07 61.6 370 23.0
Lalb_Chr02g0155631 Lupinus albus HOM05D005016 ORTHO05D005740 1.7e-07 61.6 271 23.2
PSO675G5142 Papaver somniferum HOM05D005016 ORTHO05D005740 1.7e-07 61.6 380 22.1
Prupe.6G323600 Prunus persica HOM05D005016 ORTHO05D005740 1.7e-07 61.6 262 24.4
TAR633G2288 Trochodendron aralioides HOM05D005016 ORTHO05D005740 1.7e-07 61.6 369 22.8
C07p40950 Brassica napus HOM05D001965 ORTHO05D002112 2.2e-07 61.2 114 31.6
PSO541G5136 Papaver somniferum HOM05D005016 ORTHO05D005740 2.2e-07 61.2 371 21.6
Gohir.A04G121400 Gossypium hirsutum HOM05D005016 ORTHO05D005740 3.8e-07 60.5 198 27.3
Gohir.A10G082600 Gossypium hirsutum HOM05D005016 ORTHO05D005740 3.8e-07 60.5 198 27.3
Gohir.A13G117600 Gossypium hirsutum HOM05D005016 ORTHO05D005740 3.8e-07 60.5 198 27.3
Gohir.D01G124500 Gossypium hirsutum HOM05D005016 ORTHO05D005740 3.8e-07 60.5 198 27.3
Gohir.D10G225900 Gossypium hirsutum HOM05D005016 ORTHO05D005740 3.8e-07 60.5 198 27.3
AagrBONN_evm.TU.Sc2ySwM_344.774 Anthoceros agrestis HOM05D005016 ORTHO05D005740 4.9e-07 60.1 200 27.0
Gohir.A07G065300 Gossypium hirsutum HOM05D005016 ORTHO05D005740 4.9e-07 60.1 198 27.3
AT5G27620 Arabidopsis thaliana HOM05D005016 ORTHO05D005740 6.4e-07 59.7 225 24.0
A09p05360 Brassica napus HOM05D005016 ORTHO05D005740 6.4e-07 59.7 365 22.7
AUR62000803 Chenopodium quinoa HOM05D005016 ORTHO05D005740 6.4e-07 59.7 98 33.7
AUR62005165 Chenopodium quinoa HOM05D005016 ORTHO05D005740 6.4e-07 59.7 98 33.7
Gohir.A11G266100 Gossypium hirsutum HOM05D005016 ORTHO05D005740 6.4e-07 59.7 370 22.7
Hma1.2p1_0268F.1_g107630 Hydrangea macrophylla HOM05D005016 ORTHO05D005740 6.4e-07 59.7 214 26.6
Pp3c27_2950 Physcomitrium patens HOM05D005016 ORTHO05D005740 6.4e-07 59.7 135 31.1
Sopen04g029030 Solanum pennellii HOM05D005016 ORTHO05D005740 8.4e-07 59.3 363 23.1
Eucgr.B01853 Eucalyptus grandis HOM05D005016 ORTHO05D005740 1.1e-06 58.9 234 26.5
CiPaw.07G019300 Carya illinoinensis HOM05D005016 ORTHO05D005740 1.4e-06 58.5 262 24.0
DCAR_002182 Daucus carota HOM05D005016 ORTHO05D005740 1.4e-06 58.5 112 31.2
Duzib177G0724 Durio zibethinus HOM05D005016 ORTHO05D005740 1.4e-06 58.5 370 21.6
Sc09g0003080 Simmondsia chinensis HOM05D005016 ORTHO05D005740 1.4e-06 58.5 103 33.0
Eucgr.B01941 Eucalyptus grandis HOM05D005016 ORTHO05D005740 1.9e-06 58.2 234 26.1
Potri.005G027700 Populus trichocarpa HOM05D005016 ORTHO05D005740 1.9e-06 58.2 205 25.9
Hund07082 Selenicereus undatus HOM05D005016 ORTHO05D005740 1.9e-06 58.2 98 33.7
MSTRG.6641 Avicennia marina HOM05D005016 ORTHO05D005740 2.4e-06 57.8 211 27.0
Gorai.007G298500 Gossypium raimondii HOM05D005016 ORTHO05D005740 2.4e-06 57.8 198 26.8
HanXRQChr12g0365431 Helianthus annuus HOM05D005016 ORTHO05D005740 2.4e-06 57.8 98 34.7
Lsat_1_v5_gn_8_67801 Lactuca sativa HOM05D005016 ORTHO05D005740 2.4e-06 57.8 98 34.7
C02p58190 Brassica napus HOM05D001965 ORTHO05D005740 3.2e-06 57.4 360 21.4
Nitab4.5_0002144g0050 Nicotiana tabacum HOM05D005016 ORTHO05D005740 3.2e-06 57.4 321 24.6
C09p05840 Brassica napus HOM05D005016 ORTHO05D005740 4.2e-06 57.0 364 22.3
BolC9t53511H Brassica oleracea HOM05D005016 ORTHO05D005740 4.2e-06 57.0 364 22.3
CDE10G0931 Ceratophyllum demersum HOM05D005016 ORTHO05D005740 4.2e-06 57.0 204 25.0
Gohir.A01G127800 Gossypium hirsutum HOM05D005016 ORTHO05D005740 5.4e-06 56.6 142 30.3
Gohir.A13G041900 Gossypium hirsutum HOM05D005016 ORTHO05D005740 5.4e-06 56.6 198 26.3
Lj5g0018596 Lotus japonicus HOM05D005016 ORTHO05D005740 7.1e-06 56.2 361 23.3
ATR0053G060 Amborella trichopoda HOM05D005016 ORTHO05D005740 9.3e-06 55.8 372 21.5
A02p38680 Brassica napus HOM05D001965 ORTHO05D005740 9.3e-06 55.8 360 21.9
COL.COLO4_10485 Corchorus olitorius HOM05D005016 ORTHO05D005740 9.3e-06 55.8 238 25.6
MD12G1217300 Malus domestica HOM05D005016 ORTHO05D005740 9.3e-06 55.8 97 35.1


User provided reference genes

Program Settings