Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa023769 Carpinus fangiana HOM05D005082 ORTHO05D006474 0.0e+00 1281.5 631 100.0
Cre07.g313700 Chlamydomonas reinhardtii HOM05D005082 ORTHO05D006474 3.0e-69 267.3 355 40.0
MSTRG.16959 Avicennia marina HOM05D005082 ORTHO05D006474 1.9e-68 264.6 322 43.5
MD10G1011800 Malus domestica HOM05D005082 ORTHO05D006474 2.5e-68 264.2 345 40.3
Mapoly0005s0181 Marchantia polymorpha HOM05D005082 ORTHO05D006474 5.6e-68 263.1 368 38.9
QL11p056821 Quercus lobata HOM05D005082 ORTHO05D006474 5.6e-68 263.1 346 40.8
VMungo0331G1808 Vigna mungo HOM05D005082 ORTHO05D006474 5.6e-68 263.1 310 42.6
AagrBONN_evm.TU.Sc2ySwM_117.3203 Anthoceros agrestis HOM05D005082 ORTHO05D006474 7.3e-68 262.7 333 39.6
Migut.B00003 Erythranthe guttata HOM05D005082 ORTHO05D006474 7.3e-68 262.7 320 43.1
CAN.G1645.8 Capsicum annuum HOM05D005082 ORTHO05D006474 9.5e-68 262.3 399 38.8
Gohir.D01G012800 Gossypium hirsutum HOM05D005082 ORTHO05D006474 9.5e-68 262.3 335 40.6
Pp3c1_10010 Physcomitrium patens HOM05D005082 ORTHO05D006474 9.5e-68 262.3 370 38.1
Manes.02G091600 Manihot esculenta HOM05D005082 ORTHO05D006474 1.2e-67 261.9 349 39.3
Gorai.002G014600 Gossypium raimondii HOM05D005082 ORTHO05D006474 1.6e-67 261.5 335 40.6
HanXRQChr14g0455171 Helianthus annuus HOM05D005082 ORTHO05D006474 1.6e-67 261.5 309 43.4
Lsat_1_v5_gn_8_119500 Lactuca sativa HOM05D005082 ORTHO05D006474 1.6e-67 261.5 326 41.1
Medtr8g009900 Medicago truncatula HOM05D005082 ORTHO05D006474 2.8e-67 260.8 321 41.7
Phvul.010G038400 Phaseolus vulgaris HOM05D005082 ORTHO05D006474 2.8e-67 260.8 310 42.3
DCAR_006224 Daucus carota HOM05D005082 ORTHO05D006474 3.6e-67 260.4 365 38.6
Gohir.A01G011600 Gossypium hirsutum HOM05D005082 ORTHO05D006474 3.6e-67 260.4 335 40.6
Sopen01g054400 Solanum pennellii HOM05D005082 ORTHO05D006474 6.2e-67 259.6 309 43.4
vmacro16288 Vaccinium macrocarpon HOM05D005082 ORTHO05D006474 6.2e-67 259.6 309 43.0
Cc09_g10910 Coffea canephora HOM05D005082 ORTHO05D006474 8.1e-67 259.2 358 38.8
Glyma.07G124000 Glycine max HOM05D005082 ORTHO05D006474 8.1e-67 259.2 310 42.3
Sabra04G0140300 Salix brachista HOM05D005082 ORTHO05D006474 8.1e-67 259.2 357 39.2
TWI59G1375 Tripterygium wilfordii HOM05D005082 ORTHO05D006474 8.1e-67 259.2 320 41.9
Lalb_Chr12g0210191 Lupinus albus HOM05D005082 ORTHO05D006474 1.1e-66 258.8 325 40.6
PGR042G3506 Punica granatum HOM05D005082 ORTHO05D006474 1.1e-66 258.8 333 42.0
Actinidia20586 Actinidia chinensis HOM05D005082 ORTHO05D006474 1.4e-66 258.5 356 39.3
Glyma.03G097900 Glycine max HOM05D005082 ORTHO05D006474 1.4e-66 258.5 310 42.3
Lalb_Chr07g0194811 Lupinus albus HOM05D005082 ORTHO05D006474 1.4e-66 258.5 351 39.9
ECA233G3220 Erigeron canadensis HOM05D005082 ORTHO05D006474 1.8e-66 258.1 321 42.4
Lj3g0023171 Lotus japonicus HOM05D005082 ORTHO05D006474 1.8e-66 258.1 357 40.3
Potri.009G169700 Populus trichocarpa HOM05D005082 ORTHO05D006474 1.8e-66 258.1 358 39.1
Solyc01g112290.4 Solanum lycopersicum HOM05D005082 ORTHO05D006474 1.8e-66 258.1 309 43.0
CiPaw.05G095000 Carya illinoinensis HOM05D005082 ORTHO05D006474 2.3e-66 257.7 358 39.7
Ca_25889_v3 Cicer arietinum L. HOM05D005082 ORTHO05D006474 2.3e-66 257.7 322 41.0
Lj5C170T16 Lonicera japonica HOM05D005082 ORTHO05D006474 2.3e-66 257.7 308 40.9
Sed0020521 Sechium edule HOM05D005082 ORTHO05D006474 2.3e-66 257.7 345 39.4
Dinv41859 Davidia involucrata HOM05D005082 ORTHO05D006474 3.1e-66 257.3 343 39.7
PSO210G0895 Papaver somniferum HOM05D005082 ORTHO05D006474 3.1e-66 257.3 346 39.9
TPR.G17355 Trifolium pratense HOM05D005082 ORTHO05D006474 3.1e-66 257.3 322 41.0
Cpa.g.c29182.1 Carica papaya HOM05D005082 ORTHO05D006474 4.0e-66 256.9 353 40.2
THA.LOC104800058 Tarenaya hassleriana HOM05D005082 ORTHO05D006474 4.0e-66 256.9 335 39.7
Cfa005396 Carpinus fangiana HOM05D005082 ORTHO05D006474 5.2e-66 256.5 374 38.5
CBR_g25940 Chara braunii HOM05D005082 ORTHO05D006474 5.2e-66 256.5 372 37.4
CsaV3_7G002150 Cucumis sativus L. HOM05D005082 ORTHO05D006474 5.2e-66 256.5 345 39.4
TAR628G0288 Trochodendron aralioides HOM05D005082 ORTHO05D006474 5.2e-66 256.5 309 42.7
Haze_01956 Corylus avellana HOM05D005082 ORTHO05D006474 6.8e-66 256.1 374 38.5
DCAR_001519 Daucus carota HOM05D005082 ORTHO05D006474 6.8e-66 256.1 322 41.9
MD05G1011800 Malus domestica HOM05D005082 ORTHO05D006474 6.8e-66 256.1 335 40.3
Peaxi162Scf00362g00137 Petunia axillaris HOM05D005082 ORTHO05D006474 6.8e-66 256.1 313 42.8
SalBow1G4726 Salvia bowleyana HOM05D005082 ORTHO05D006474 8.9e-66 255.8 321 42.7
Atru.BG.54.p Acer truncatum HOM05D005082 ORTHO05D006474 1.2e-65 255.4 333 39.6
MCO11G616 Micromonas commoda HOM05D005082 ORTHO05D006474 1.2e-65 255.4 377 36.9
Sc08g0002050 Simmondsia chinensis HOM05D005082 ORTHO05D006474 1.2e-65 255.4 309 42.1
Thecc.02G148100 Theobroma cacao HOM05D005082 ORTHO05D006474 1.2e-65 255.4 323 41.8
ClCG02G003240 Citrullus lanatus HOM05D005082 ORTHO05D006474 1.5e-65 255.0 345 39.4
Haze_26758 Corylus avellana HOM05D005082 ORTHO05D006474 1.5e-65 255.0 396 39.4
MELO3C015693.2 Cucumis melo HOM05D005082 ORTHO05D006474 1.5e-65 255.0 333 39.9
FvH4_2g14910 Fragaria vesca HOM05D005082 ORTHO05D006474 1.5e-65 255.0 333 40.8
FAN24G2999 Fragaria x ananassa HOM05D005082 ORTHO05D006474 1.5e-65 255.0 333 40.8
PSO675G0919 Papaver somniferum HOM05D005082 ORTHO05D006474 1.5e-65 255.0 346 39.6
Prupe.8G016800 Prunus persica HOM05D005082 ORTHO05D006474 1.5e-65 255.0 333 40.8
GSVIVG01023855001 Vitis vinifera HOM05D005082 ORTHO05D006474 1.5e-65 255.0 333 40.5
Atru.chr5.3580 Acer truncatum HOM05D005082 ORTHO05D006474 2.6e-65 254.2 358 38.8
Aqoxy6G02995 Aquilegia oxysepala HOM05D005082 ORTHO05D006474 2.6e-65 254.2 325 41.8
Ciclev10028098m.g Citrus clementina HOM05D005082 ORTHO05D006474 2.6e-65 254.2 334 41.3
Eucgr.H05005 Eucalyptus grandis HOM05D005082 ORTHO05D006474 2.6e-65 254.2 311 42.1
FAN20G1299 Fragaria x ananassa HOM05D005082 ORTHO05D006474 3.4e-65 253.8 333 40.5
AUR62013197 Chenopodium quinoa HOM05D005082 ORTHO05D006474 4.4e-65 253.4 325 41.5
Duzib248G1564 Durio zibethinus HOM05D005082 ORTHO05D006474 4.4e-65 253.4 323 41.5
Os02g0121000 Oryza sativa ssp. japonica HOM05D005082 ORTHO05D006474 4.4e-65 253.4 329 38.9
MBI01_g28404_MAGBIO Magnolia biondii HOM05D005082 ORTHO05D006474 9.9e-65 252.3 325 41.2
RcHm_v2.0_Chr6g0277491 Rosa chinensis HOM05D005082 ORTHO05D006474 9.9e-65 252.3 333 40.8
COL.COLO4_03850 Corchorus olitorius HOM05D005082 ORTHO05D006474 1.3e-64 251.9 343 39.7
AUR62010207 Chenopodium quinoa HOM05D005082 ORTHO05D006474 1.7e-64 251.5 325 41.2
Hund06352 Selenicereus undatus HOM05D005082 ORTHO05D006474 1.7e-64 251.5 345 38.6
ATR0605G166 Amborella trichopoda HOM05D005082 ORTHO05D006474 3.7e-64 250.4 352 38.6
EL10Ac9g21557 Beta vulgaris HOM05D005082 ORTHO05D006474 3.7e-64 250.4 309 41.4
Oeu006114.1 Olea europaea HOM05D005082 ORTHO05D006474 6.4e-64 249.6 306 42.2
Aa31LG1G17860 Aethionema arabicum HOM05D005082 ORTHO05D006474 8.3e-64 249.2 330 40.9
Rhsim04G0008200 Rhododendron simsii HOM05D005082 ORTHO05D006474 8.3e-64 249.2 355 38.0
arahy.Tifrunner.gnm1.ann1.M18VWQ Arachis hypogaea HOM05D005082 ORTHO05D006474 1.1e-63 248.8 339 39.5
arahy.Tifrunner.gnm1.ann1.44ERQ5 Arachis hypogaea HOM05D005082 ORTHO05D006474 1.4e-63 248.4 372 37.9
Ah.01g017700 Amaranthus hybridus HOM05D005082 ORTHO05D006474 1.9e-63 248.1 326 40.2
CDE06G2564 Ceratophyllum demersum HOM05D005082 ORTHO05D006474 2.4e-63 247.7 330 40.0
FAN15G2332 Fragaria x ananassa HOM05D005082 ORTHO05D006474 2.4e-63 247.7 344 39.5
Carub.0008s2483 Capsella rubella HOM05D005082 ORTHO05D006474 7.1e-63 246.1 309 40.8
PRCOL_00001874 Prasinoderma coloniale HOM05D005082 ORTHO05D006474 4.6e-62 243.4 342 39.2
CARHR277960 Cardamine hirsuta HOM05D005082 ORTHO05D006474 1.0e-61 242.3 309 40.8
AL8G41310 Arabidopsis lyrata HOM05D005082 ORTHO05D006474 1.3e-61 241.9 309 40.5
BcaC01g02661 Brassica carinata HOM05D005082 ORTHO05D006474 1.3e-61 241.9 334 39.2
C03p62220 Brassica napus HOM05D005082 ORTHO05D006474 1.3e-61 241.9 334 39.2
BolC3t18485H Brassica oleracea HOM05D005082 ORTHO05D006474 1.3e-61 241.9 334 39.2
AT5G64050 Arabidopsis thaliana HOM05D005082 ORTHO05D006474 2.3e-61 241.1 309 40.1
Thhalv10003868m.g Eutrema salsugineum HOM05D005082 ORTHO05D006474 3.9e-61 240.4 309 40.5
Sp2g27120 Schrenkiella parvula HOM05D005082 ORTHO05D006474 5.1e-61 240.0 309 40.1
A06p30760 Brassica napus HOM05D005082 ORTHO05D006474 6.6e-61 239.6 344 38.1
SMO134G0063 Selaginella moellendorffii HOM05D005082 ORTHO05D006474 8.6e-61 239.2 328 39.6
Psat4g215760 Pisum sativum HOM05D005082 ORTHO05D006474 5.6e-60 236.5 401 34.7
unitig_21.g20422 Utricularia gibba HOM05D005082 ORTHO05D006474 5.6e-60 236.5 323 40.6
BraA06t26018Z Brassica rapa HOM05D005082 ORTHO05D006474 4.4e-57 226.9 351 35.9
SGA_v2.0_scaffold5G02667 Striga asiatica HOM05D005082 ORTHO05D006474 1.7e-56 224.9 444 33.8
CSS0015047 Camellia sinensis var. sinensis HOM05D005082 ORTHO05D006474 4.9e-56 223.4 309 39.5
Nitab4.5_0001220g0040 Nicotiana tabacum HOM05D005082 ORTHO05D006474 2.7e-54 217.6 307 39.4
SEGI_01300 Sequoiadendron giganteum HOM05D005082 ORTHO05D006474 1.0e-53 215.7 306 36.3
Sed0003916 Sechium edule HOM05D005082 ORTHO05D006474 3.9e-53 213.8 346 35.0
QL04p064927 Quercus lobata HOM05D005082 ORTHO05D006474 7.3e-52 209.5 321 36.4
BcaB02g09792 Brassica carinata HOM05D005082 ORTHO05D006474 2.6e-49 201.1 279 37.6
Nitab4.5_0010601g0010 Nicotiana tabacum HOM05D005082 ORTHO05D006474 1.3e-48 198.7 307 37.1
Haze_26742 Corylus avellana HOM05D005082 ORTHO05D006474 2.2e-48 198.0 306 38.6
Aqoxy2G01868 Aquilegia oxysepala HOM05D005082 ORTHO05D006474 2.4e-34 151.4 122 59.0
Lj9C409G5 Lonicera japonica HOM05D005082 ORTHO05D006474 5.5e-31 140.2 322 31.1
Dinv14185 Davidia involucrata HOM05D005082 ORTHO05D006474 1.8e-26 125.2 252 32.9
HPP92_019667 Vanilla planifolia HOM05D005082 ORTHO05D006474 1.2e-22 112.5 107 51.4
Psat6g037120 Pisum sativum HOM05D005082 ORTHO05D006474 1.8e-21 108.6 229 29.3
Aqoxy144s004 Aquilegia oxysepala HOM05D005082 ORTHO05D006474 3.0e-21 107.8 141 39.0
Duzib052G0849 Durio zibethinus HOM05D005082 ORTHO05D006474 1.5e-20 105.5 268 29.1
FAN27G0598 Fragaria x ananassa HOM05D005082 ORTHO05D006474 6.3e-19 100.1 211 32.2
Zm00001eb208250 Zea mays HOM05D005082 ORTHO05D006474 6.9e-18 96.7 140 34.3
Zm00001eb230310 Zea mays HOM05D005082 ORTHO05D006474 6.9e-18 96.7 140 34.3
Duzib132G0508 Durio zibethinus HOM05D005082 ORTHO05D006474 9.0e-18 96.3 146 34.2
HanXRQChr14g0432441 Helianthus annuus HOM05D005082 ORTHO05D006474 5.5e-15 87.0 105 40.0
Cfa005395 Carpinus fangiana HOM05D005082 ORTHO05D006474 7.9e-14 83.2 103 45.6
Duzib093G0106 Durio zibethinus HOM05D005082 ORTHO05D006474 1.7e-11 75.5 62 51.6
RcHm_v2.0_Chr2g0162471 Rosa chinensis HOM05D005082 ORTHO05D006474 1.6e-06 58.9 211 24.2
Cfa023978 Carpinus fangiana HOM05D003050 ORTHO05D003513 4.7e-06 57.4 275 25.1
HanXRQChr03g0071281 Helianthus annuus HOM05D003050 ORTHO05D003513 6.1e-06 57.0 229 24.0


User provided reference genes

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