Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa023268 Carpinus fangiana HOM05D005983 ORTHO05D007438 0.0e+00 1392.1 694 100.0
RcHm_v2.0_Chr7g0203641 Rosa chinensis HOM05D005983 ORTHO05D007438 1.1e-48 199.1 422 33.4
Os03g0101900 Oryza sativa ssp. japonica HOM05D005983 ORTHO05D007438 4.1e-48 197.2 456 32.5
Mapoly0144s0014 Marchantia polymorpha HOM05D005983 ORTHO05D007438 5.4e-48 196.8 477 33.1
Pp3c10_660 Physcomitrium patens HOM05D005983 ORTHO05D007438 1.6e-47 195.3 451 33.3
Aa31LG2G12890 Aethionema arabicum HOM05D005983 ORTHO05D007438 2.1e-47 194.9 437 33.2
Sp7g15340 Schrenkiella parvula HOM05D005983 ORTHO05D007438 2.1e-47 194.9 431 34.1
CANSAT21G0098 Cannabis sativa HOM05D005983 ORTHO05D007438 3.5e-47 194.1 472 32.6
AT4G16700 Arabidopsis thaliana HOM05D005983 ORTHO05D007438 4.6e-47 193.7 429 33.3
FAN04G1995 Fragaria x ananassa HOM05D005983 ORTHO05D007438 4.6e-47 193.7 422 32.7
FvH4_5g19150 Fragaria vesca HOM05D005983 ORTHO05D007438 6.0e-47 193.4 428 33.2
FAN18G0274 Fragaria x ananassa HOM05D005983 ORTHO05D007438 6.0e-47 193.4 428 33.2
BcaNung00159 Brassica carinata HOM05D005983 ORTHO05D007438 1.3e-46 192.2 431 32.9
FAN08G1502 Fragaria x ananassa HOM05D005983 ORTHO05D007438 3.0e-46 191.0 423 33.3
AL7G38030 Arabidopsis lyrata HOM05D005983 ORTHO05D007438 1.1e-45 189.1 429 33.3
arahy.Tifrunner.gnm1.ann1.NE97L5 Arachis hypogaea HOM05D005983 ORTHO05D007438 1.5e-45 188.7 423 34.0
BraA01t01986Z Brassica rapa HOM05D005983 ORTHO05D007438 1.5e-45 188.7 532 30.1
CsaV3_5G004310 Cucumis sativus L. HOM05D005983 ORTHO05D007438 1.5e-45 188.7 429 31.2
DCAR_004965 Daucus carota HOM05D005983 ORTHO05D007438 1.5e-45 188.7 476 31.5
ECA233G1798 Erigeron canadensis HOM05D005983 ORTHO05D007438 1.5e-45 188.7 431 32.5
A01p20580 Brassica napus HOM05D005983 ORTHO05D007438 1.9e-45 188.3 424 33.0
Gohir.A03G007500 Gossypium hirsutum HOM05D005983 ORTHO05D007438 1.9e-45 188.3 546 30.2
Carub.0007s2469 Capsella rubella HOM05D005983 ORTHO05D007438 3.3e-45 187.6 426 33.6
Gohir.D03G163500 Gossypium hirsutum HOM05D005983 ORTHO05D007438 4.3e-45 187.2 545 29.9
Prupe.5G066800 Prunus persica HOM05D005983 ORTHO05D007438 5.6e-45 186.8 421 32.3
SMO351G0559 Selaginella moellendorffii HOM05D005983 ORTHO05D007438 5.6e-45 186.8 422 32.7
Nitab4.5_0000618g0100 Nicotiana tabacum HOM05D005983 ORTHO05D007438 7.3e-45 186.4 484 31.2
Peaxi162Scf01022g00324 Petunia axillaris HOM05D005983 ORTHO05D007438 7.3e-45 186.4 429 31.9
BcaC09g50403 Brassica carinata HOM05D005983 ORTHO05D007438 9.5e-45 186.0 429 32.6
C01p25880 Brassica napus HOM05D005983 ORTHO05D007438 9.5e-45 186.0 429 32.6
BolC1t02533H Brassica oleracea HOM05D005983 ORTHO05D007438 9.5e-45 186.0 429 32.6
MELO3C005523.2 Cucumis melo HOM05D005983 ORTHO05D007438 9.5e-45 186.0 429 31.7
TWI15G0813 Tripterygium wilfordii HOM05D005983 ORTHO05D007438 9.5e-45 186.0 432 31.9
Aqoxy5G03845 Aquilegia oxysepala HOM05D005983 ORTHO05D007438 1.2e-44 185.7 428 32.9
Hma1.2p1_0316F.1_g122960 Hydrangea macrophylla HOM05D005983 ORTHO05D007438 1.2e-44 185.7 432 31.2
MD06G1055900 Malus domestica HOM05D005983 ORTHO05D007438 1.2e-44 185.7 422 32.0
Nn1g00952 Nelumbo nucifera HOM05D005983 ORTHO05D007438 1.2e-44 185.7 431 31.8
PGSC0003DMG402011882 Solanum tuberosum HOM05D005983 ORTHO05D007438 1.2e-44 185.7 484 30.2
Ca_24588_v3 Cicer arietinum L. HOM05D005983 ORTHO05D007438 1.6e-44 185.3 429 31.7
Eucgr.E00410 Eucalyptus grandis HOM05D005983 ORTHO05D007438 1.6e-44 185.3 429 30.8
Gorai.003G172200 Gossypium raimondii HOM05D005983 ORTHO05D007438 1.6e-44 185.3 545 29.9
Thecc.03G249100 Theobroma cacao HOM05D005983 ORTHO05D007438 1.6e-44 185.3 429 30.8
Psat2g176840 Pisum sativum HOM05D005983 ORTHO05D007438 2.1e-44 184.9 421 31.6
Medtr5g012880 Medicago truncatula HOM05D005983 ORTHO05D007438 2.8e-44 184.5 424 33.0
CARHR223230 Cardamine hirsuta HOM05D005983 ORTHO05D007438 3.6e-44 184.1 426 31.7
TPR.G18111 Trifolium pratense HOM05D005983 ORTHO05D007438 3.6e-44 184.1 429 31.2
COL.COLO4_37146 Corchorus olitorius HOM05D005983 ORTHO05D007438 4.7e-44 183.7 430 30.7
Lsat_1_v5_gn_6_18021 Lactuca sativa HOM05D005983 ORTHO05D007438 6.2e-44 183.3 474 30.2
CAN.G62.33 Capsicum annuum HOM05D005983 ORTHO05D007438 8.1e-44 183.0 476 31.1
CBR_g40206 Chara braunii HOM05D005983 ORTHO05D007438 8.1e-44 183.0 461 32.8
Duzib084G0278 Durio zibethinus HOM05D005983 ORTHO05D007438 8.1e-44 183.0 433 31.2
Sopen06g020900 Solanum pennellii HOM05D005983 ORTHO05D007438 1.1e-43 182.6 484 30.4
CiPaw.11G080800 Carya illinoinensis HOM05D005983 ORTHO05D007438 1.4e-43 182.2 425 31.8
Lj2g0002324 Lotus japonicus HOM05D005983 ORTHO05D007438 1.4e-43 182.2 544 30.3
Solyc06g060780.4 Solanum lycopersicum HOM05D005983 ORTHO05D007438 1.4e-43 182.2 484 30.0
CSS0015193 Camellia sinensis var. sinensis HOM05D005983 ORTHO05D007438 1.8e-43 181.8 421 30.2
PSO357G0330 Papaver somniferum HOM05D005983 ORTHO05D007438 1.8e-43 181.8 430 31.4
Sed0018188 Sechium edule HOM05D005983 ORTHO05D007438 1.8e-43 181.8 430 32.3
Glyma.01G207800 Glycine max HOM05D005983 ORTHO05D007438 2.4e-43 181.4 538 30.3
PGR042G2168 Punica granatum HOM05D005983 ORTHO05D007438 2.4e-43 181.4 429 31.9
Cc08_g12250 Coffea canephora HOM05D005983 ORTHO05D007438 3.1e-43 181.0 432 31.5
HanXRQChr16g0510961 Helianthus annuus HOM05D005983 ORTHO05D007438 3.1e-43 181.0 422 32.0
VMungo1215G0088 Vigna mungo HOM05D005983 ORTHO05D007438 3.1e-43 181.0 546 28.6
Ciclev10020120m.g Citrus clementina HOM05D005983 ORTHO05D007438 6.8e-43 179.9 432 32.4
Potri.003G078300 Populus trichocarpa HOM05D005983 ORTHO05D007438 6.8e-43 179.9 431 30.9
Sed0010070 Sechium edule HOM05D005983 ORTHO05D007438 6.8e-43 179.9 429 32.6
Lalb_Chr05g0214371 Lupinus albus HOM05D005983 ORTHO05D007438 8.9e-43 179.5 421 32.5
MBI04_g09520_MAGBIO Magnolia biondii HOM05D005983 ORTHO05D007438 8.9e-43 179.5 432 31.2
Ah.12g054210 Amaranthus hybridus HOM05D005983 ORTHO05D007438 2.0e-42 178.3 432 32.4
Manes.01G082200 Manihot esculenta HOM05D005983 ORTHO05D007438 2.0e-42 178.3 430 30.9
THA.LOC104815498 Tarenaya hassleriana HOM05D005983 ORTHO05D007438 3.4e-42 177.6 392 35.2
Phvul.002G057200 Phaseolus vulgaris HOM05D005983 ORTHO05D007438 9.9e-42 176.0 422 31.8
PSO170G1657 Papaver somniferum HOM05D005983 ORTHO05D007438 2.2e-41 174.9 438 30.6
Sabra03G0048600 Salix brachista HOM05D005983 ORTHO05D007438 6.4e-41 173.3 437 30.2
unitig_744.g24471 Utricularia gibba HOM05D005983 ORTHO05D007438 8.4e-41 172.9 431 28.8
AUR62019966 Chenopodium quinoa HOM05D005983 ORTHO05D007438 1.1e-40 172.6 406 32.8
ATR0317G025 Amborella trichopoda HOM05D005983 ORTHO05D007438 2.4e-40 171.4 444 30.2
AUR62007103 Chenopodium quinoa HOM05D005983 ORTHO05D007438 2.4e-40 171.4 406 32.3
HPP92_015120 Vanilla planifolia HOM05D005983 ORTHO05D007438 3.2e-40 171.0 430 31.6
Migut.A01119 Erythranthe guttata HOM05D005983 ORTHO05D007438 1.6e-39 168.7 421 30.2
GSVIVG01004724001 Vitis vinifera HOM05D005983 ORTHO05D007438 2.1e-39 168.3 425 30.4
QL12p011684 Quercus lobata HOM05D005983 ORTHO05D007438 3.5e-39 167.5 444 29.5
Hund14571 Selenicereus undatus HOM05D005983 ORTHO05D007438 3.5e-39 167.5 320 35.6
Sc01g0008340 Simmondsia chinensis HOM05D005983 ORTHO05D007438 4.6e-39 167.2 317 33.8
EL10Ac5g12377 Beta vulgaris HOM05D005983 ORTHO05D007438 6.0e-39 166.8 384 31.5
Dinv21647 Davidia involucrata HOM05D005983 ORTHO05D007438 2.3e-38 164.9 396 31.1
arahy.Tifrunner.gnm1.ann1.0NSC2B Arachis hypogaea HOM05D005983 ORTHO05D007438 8.7e-38 162.9 317 35.6
SalBow6G6019 Salvia bowleyana HOM05D005983 ORTHO05D007438 1.9e-37 161.8 441 28.3
Rhsim01G0100800 Rhododendron simsii HOM05D005983 ORTHO05D007438 1.6e-36 158.7 407 31.9
Atru.chr9.1290 Acer truncatum HOM05D005983 ORTHO05D007438 3.6e-36 157.5 328 32.0
Cpa.g.sc29.178 Carica papaya HOM05D005983 ORTHO05D007438 4.4e-34 150.6 415 29.9
ClCG01G004150 Citrullus lanatus HOM05D005983 ORTHO05D007438 7.6e-34 149.8 421 28.7
TAR713G0001 Trochodendron aralioides HOM05D005983 ORTHO05D007438 2.4e-32 144.8 316 33.2
SGA_v2.0_scaffold104G30169 Striga asiatica HOM05D005983 ORTHO05D007438 4.2e-32 144.1 486 27.2
Duzib205G1394 Durio zibethinus HOM05D005983 ORTHO05D007438 2.3e-30 138.3 427 27.2
CDE04G1583 Ceratophyllum demersum HOM05D005983 ORTHO05D007438 3.6e-28 131.0 228 38.6
Actinidia02144 Actinidia chinensis HOM05D005983 ORTHO05D007438 6.2e-28 130.2 194 38.7
Actinidia14415 Actinidia chinensis HOM05D005983 ORTHO05D007438 1.4e-27 129.0 235 35.7
Nitab4.5_0001076g0010 Nicotiana tabacum HOM05D005983 ORTHO05D007438 1.8e-27 128.6 289 34.6
Thhalv10025592m.g Eutrema salsugineum HOM05D005983 ORTHO05D007438 1.2e-26 125.9 288 32.6
PRCOL_00002495 Prasinoderma coloniale HOM05D000251 ORTHO05D007438 7.9e-23 113.2 194 40.2
vmacro00190 Vaccinium macrocarpon HOM05D005983 ORTHO05D007438 1.3e-20 105.9 253 34.0
Actinidia02145 Actinidia chinensis HOM05D005983 ORTHO05D007438 2.9e-17 94.7 170 37.1
Lj2A220G37 Lonicera japonica HOM05D005983 ORTHO05D007438 9.3e-16 89.7 114 42.1
BcaC02g09019 Brassica carinata HOM05D005983 ORTHO05D007438 1.0e-14 86.3 79 51.9
C04p39670 Brassica napus HOM05D005983 ORTHO05D007438 1.0e-14 86.3 79 51.9
BolC4t25537H Brassica oleracea HOM05D005983 ORTHO05D007438 1.0e-14 86.3 79 51.9
Lj2A220G36 Lonicera japonica HOM05D005983 ORTHO05D007438 3.9e-14 84.3 168 33.3
C09p44540 Brassica napus HOM05D005983 ORTHO05D007438 1.1e-13 82.8 79 50.6
Haze_01069 Corylus avellana HOM05D005983 ORTHO05D007438 1.5e-13 82.4 161 32.3
Haze_01067 Corylus avellana HOM05D005983 ORTHO05D007438 4.3e-13 80.9 161 34.8
Glyma.11G034500 Glycine max HOM05D005983 ORTHO05D007438 1.6e-12 79.0 164 31.1
Ca_29382_v3 Cicer arietinum L. HOM05D003620 ORTHO05D007438 2.1e-12 78.6 344 24.1
Pp3s32_287 Physcomitrium patens HOM05D003620 ORTHO05D007438 8.4e-09 66.6 339 21.2
AUR62004784 Chenopodium quinoa HOM05D003620 ORTHO05D004261 5.5e-08 63.9 151 30.5
SEGI_17682 Sequoiadendron giganteum HOM05D005983 ORTHO05D007438 5.5e-08 63.9 74 48.6
BcaC07g42540 Brassica carinata HOM05D005983 ORTHO05D007438 9.3e-08 63.2 81 45.7
vmacro00191 Vaccinium macrocarpon HOM05D005983 ORTHO05D007438 1.6e-07 62.4 140 32.9
EL10Ac4g08941 Beta vulgaris HOM05D003620 ORTHO05D004261 2.1e-07 62.0 77 44.2
AL7G27030 Arabidopsis lyrata HOM05D003620 ORTHO05D004261 3.5e-07 61.2 78 43.6
CARHR233480 Cardamine hirsuta HOM05D003620 ORTHO05D004261 3.5e-07 61.2 152 31.6
Aa31LG3G330 Aethionema arabicum HOM05D003620 ORTHO05D004261 4.6e-07 60.8 152 31.6
AT4G25970 Arabidopsis thaliana HOM05D003620 ORTHO05D004261 4.6e-07 60.8 78 42.3
AL161U10010 Arabidopsis lyrata HOM05D003620 ORTHO05D004261 6.0e-07 60.5 152 30.3
AL8G33150 Arabidopsis lyrata HOM05D003620 ORTHO05D004261 6.0e-07 60.5 152 30.3
BcaC09g50725 Brassica carinata HOM05D003620 ORTHO05D004261 6.0e-07 60.5 152 31.6
BcaNung03773 Brassica carinata HOM05D003620 ORTHO05D004261 6.0e-07 60.5 152 31.6
A01p17230 Brassica napus HOM05D003620 ORTHO05D004261 6.0e-07 60.5 152 31.6
C01p21590 Brassica napus HOM05D003620 ORTHO05D004261 6.0e-07 60.5 152 31.6
BolC1t02078H Brassica oleracea HOM05D003620 ORTHO05D004261 6.0e-07 60.5 152 31.6
BraA01t01679Z Brassica rapa HOM05D003620 ORTHO05D004261 6.0e-07 60.5 152 31.6
Carub.0007s1498 Capsella rubella HOM05D003620 ORTHO05D004261 6.0e-07 60.5 152 30.9
Prupe.1G560600 Prunus persica HOM05D003620 ORTHO05D004261 6.0e-07 60.5 152 32.2
Aa31LG3G13090 Aethionema arabicum HOM05D003620 ORTHO05D004261 7.9e-07 60.1 152 30.9
BcaC03g14715 Brassica carinata HOM05D005983 ORTHO05D007438 7.9e-07 60.1 79 38.0
C02p21550 Brassica napus HOM05D005983 ORTHO05D007438 7.9e-07 60.1 79 38.0
BolC2t08295H Brassica oleracea HOM05D005983 ORTHO05D007438 7.9e-07 60.1 79 38.0
Carub.0008s1770 Capsella rubella HOM05D003620 ORTHO05D004261 7.9e-07 60.1 152 30.3
PSO675G2802 Papaver somniferum HOM05D003620 ORTHO05D004261 7.9e-07 60.1 164 30.5
Thhalv10024661m.g Eutrema salsugineum HOM05D003620 ORTHO05D004261 1.0e-06 59.7 78 43.6
Manes.07G024800 Manihot esculenta HOM05D003620 ORTHO05D004261 1.0e-06 59.7 152 30.3
PSO541G1613 Papaver somniferum HOM05D003620 ORTHO05D004261 1.3e-06 59.3 164 31.1
Peaxi162Scf00001g00523 Petunia axillaris HOM05D003620 ORTHO05D004261 1.3e-06 59.3 152 30.3
THA.LOC104811774 Tarenaya hassleriana HOM05D003620 ORTHO05D004261 1.3e-06 59.3 152 30.9
CANSAT11G0919 Cannabis sativa HOM05D003620 ORTHO05D004261 1.8e-06 58.9 152 30.9
Mapoly0064s0044 Marchantia polymorpha HOM05D003620 ORTHO05D004261 2.3e-06 58.5 78 42.3
RcHm_v2.0_Chr7g0225351 Rosa chinensis HOM05D003620 ORTHO05D004261 2.3e-06 58.5 78 43.6
AT5G57190 Arabidopsis thaliana HOM05D003620 ORTHO05D004261 3.0e-06 58.2 152 30.3
BraA08t34844Z Brassica rapa HOM05D005983 ORTHO05D007438 3.0e-06 58.2 79 38.0
Cc02_g21940 Coffea canephora HOM05D003620 ORTHO05D004261 3.0e-06 58.2 86 41.9
Gohir.D12G014500 Gossypium hirsutum HOM05D003620 ORTHO05D004261 3.0e-06 58.2 152 30.9
Sp6g18920 Schrenkiella parvula HOM05D003620 ORTHO05D004261 3.0e-06 58.2 152 30.3
Solyc01g104880.3 Solanum lycopersicum HOM05D003620 ORTHO05D004261 3.0e-06 58.2 85 42.4
Sopen01g047400 Solanum pennellii HOM05D003620 ORTHO05D004261 3.0e-06 58.2 85 42.4
HPP92_019398 Vanilla planifolia HOM05D003620 ORTHO05D004261 3.0e-06 58.2 78 42.3
VMungo0540G0770 Vigna mungo HOM05D003620 ORTHO05D004261 3.0e-06 58.2 153 32.0
Actinidia14414 Actinidia chinensis HOM05D005983 ORTHO05D007438 3.9e-06 57.8 80 38.8
BcaB08g36077 Brassica carinata HOM05D003620 ORTHO05D004261 3.9e-06 57.8 152 30.3
BcaC04g19991 Brassica carinata HOM05D003620 ORTHO05D004261 3.9e-06 57.8 152 30.3
A10p14580 Brassica napus HOM05D003620 ORTHO05D004261 3.9e-06 57.8 152 30.3
C09p49020 Brassica napus HOM05D003620 ORTHO05D004261 3.9e-06 57.8 152 30.3
BolC9t57753H Brassica oleracea HOM05D003620 ORTHO05D004261 3.9e-06 57.8 152 30.3
BraA10t43545Z Brassica rapa HOM05D003620 ORTHO05D004261 3.9e-06 57.8 152 30.3
Glyma.08G181200 Glycine max HOM05D003620 ORTHO05D004261 3.9e-06 57.8 153 30.7
Lalb_Chr18g0060681 Lupinus albus HOM05D003620 ORTHO05D004261 3.9e-06 57.8 153 30.1
Manes.10G117200 Manihot esculenta HOM05D003620 ORTHO05D004261 3.9e-06 57.8 81 39.5
THA.LOC104817775 Tarenaya hassleriana HOM05D003620 ORTHO05D004261 3.9e-06 57.8 152 30.9
Thecc.02G144000 Theobroma cacao HOM05D003620 ORTHO05D004261 3.9e-06 57.8 152 30.9
Migut.B00643 Erythranthe guttata HOM05D003620 ORTHO05D004261 5.1e-06 57.4 152 30.3
Thhalv10012950m.g Eutrema salsugineum HOM05D003620 ORTHO05D004261 5.1e-06 57.4 152 30.9
Lj6g0005534 Lotus japonicus HOM05D003620 ORTHO05D004261 5.1e-06 57.4 153 30.7
Phvul.006G208800 Phaseolus vulgaris HOM05D003620 ORTHO05D004261 5.1e-06 57.4 85 42.4
Potri.003G061700 Populus trichocarpa HOM05D003620 ORTHO05D004261 5.1e-06 57.4 152 30.9
Sabra01G0139300 Salix brachista HOM05D003620 ORTHO05D004261 5.1e-06 57.4 152 30.9
Atru.chr6.881 Acer truncatum HOM05D003620 ORTHO05D004261 6.7e-06 57.0 152 30.3
DCAR_001444 Daucus carota HOM05D003620 ORTHO05D004261 6.7e-06 57.0 152 28.3
FvH4_5g30530 Fragaria vesca HOM05D003620 ORTHO05D004261 6.7e-06 57.0 78 43.6
FAN08G3618 Fragaria x ananassa HOM05D003620 ORTHO05D004261 6.7e-06 57.0 78 43.6
FAN18G1779 Fragaria x ananassa HOM05D003620 ORTHO05D004261 6.7e-06 57.0 78 43.6
MD08G1222700 Malus domestica HOM05D003620 ORTHO05D004261 6.7e-06 57.0 152 30.3
Sabra03G0035800 Salix brachista HOM05D003620 ORTHO05D004261 6.7e-06 57.0 152 30.9
MSTRG.16561 Avicennia marina HOM05D003620 ORTHO05D004261 8.7e-06 56.6 81 43.2
CAN.G523.97 Capsicum annuum HOM05D003620 ORTHO05D004261 8.7e-06 56.6 152 30.9
CDE08G1148 Ceratophyllum demersum HOM05D003620 ORTHO05D004261 8.7e-06 56.6 153 31.4
FAN04G1518 Fragaria x ananassa HOM05D003620 ORTHO05D004261 8.7e-06 56.6 78 42.3
Gorai.008G014600 Gossypium raimondii HOM05D003620 ORTHO05D004261 8.7e-06 56.6 152 30.9
MBI06_g29671_MAGBIO Magnolia biondii HOM05D003620 ORTHO05D004261 8.7e-06 56.6 78 43.6


User provided reference genes

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