Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa023245 Carpinus fangiana HOM05D003416 ORTHO05D003886 0.0e+00 2143.2 1168 100.0
CBR_g51799 Chara braunii HOM05D003416 ORTHO05D003886 2.3e-27 129.0 209 35.9
Gohir.D06G211700 Gossypium hirsutum HOM05D003416 ORTHO05D003886 4.0e-27 128.3 194 39.2
Gorai.010G254500 Gossypium raimondii HOM05D003416 ORTHO05D003886 4.0e-27 128.3 194 39.2
SMO137G0066 Selaginella moellendorffii HOM05D003416 ORTHO05D003886 4.0e-27 128.3 195 35.9
Gohir.A06G209300 Gossypium hirsutum HOM05D003416 ORTHO05D003886 1.2e-26 126.7 194 39.2
Eucgr.E03460 Eucalyptus grandis HOM05D003416 ORTHO05D003886 2.0e-26 125.9 194 36.1
MELO3C007312.2 Cucumis melo HOM05D003416 ORTHO05D003886 2.6e-26 125.6 194 36.1
CsaV3_6G049840 Cucumis sativus L. HOM05D003416 ORTHO05D003886 3.4e-26 125.2 194 36.1
Pp3c14_20060 Physcomitrium patens HOM05D003416 ORTHO05D003886 3.4e-26 125.2 200 34.5
Potri.004G035500 Populus trichocarpa HOM05D003416 ORTHO05D003886 3.4e-26 125.2 194 35.6
Actinidia24064 Actinidia chinensis HOM05D003416 ORTHO05D003886 4.4e-26 124.8 231 33.3
CAN.G404.14 Capsicum annuum HOM05D003416 ORTHO05D003886 5.7e-26 124.4 194 36.1
ClCG01G022650 Citrullus lanatus HOM05D003416 ORTHO05D003886 5.7e-26 124.4 194 36.1
Duzib235G0788 Durio zibethinus HOM05D003416 ORTHO05D003886 5.7e-26 124.4 194 34.5
Prupe.4G035900 Prunus persica HOM05D003416 ORTHO05D003886 5.7e-26 124.4 194 35.6
Actinidia05584 Actinidia chinensis HOM05D003416 ORTHO05D003886 1.3e-25 123.2 194 36.1
Mapoly0186s0005 Marchantia polymorpha HOM05D003416 ORTHO05D003886 1.3e-25 123.2 196 33.2
PGSC0003DMG400024059 Solanum tuberosum HOM05D003416 ORTHO05D003886 1.3e-25 123.2 194 34.0
TWI63G0283 Tripterygium wilfordii HOM05D003416 ORTHO05D003886 1.3e-25 123.2 194 35.1
TWI38G0839 Tripterygium wilfordii HOM05D003416 ORTHO05D003886 1.7e-25 122.9 194 35.6
CiPaw.09G158800 Carya illinoinensis HOM05D003416 ORTHO05D003886 2.2e-25 122.5 194 35.6
Ciclev10016702m.g Citrus clementina HOM05D003416 ORTHO05D003886 2.2e-25 122.5 194 35.1
Lj4g0020511 Lotus japonicus HOM05D003416 ORTHO05D003886 2.2e-25 122.5 194 34.0
Oeu033054.1 Olea europaea HOM05D003416 ORTHO05D003886 2.2e-25 122.5 194 34.0
Lsat_1_v5_gn_5_141241 Lactuca sativa HOM05D003416 ORTHO05D003886 2.8e-25 122.1 195 36.4
MD05G1324500 Malus domestica HOM05D003416 ORTHO05D003886 2.8e-25 122.1 194 35.6
Nitab4.5_0002347g0010 Nicotiana tabacum HOM05D003416 ORTHO05D003886 2.8e-25 122.1 194 34.0
Pp3c17_18750 Physcomitrium patens HOM05D003416 ORTHO05D003886 2.8e-25 122.1 200 35.5
SEGI_02597 Sequoiadendron giganteum HOM05D003416 ORTHO05D003886 2.8e-25 122.1 198 33.3
Thecc.06G197700 Theobroma cacao HOM05D003416 ORTHO05D003886 2.8e-25 122.1 194 35.1
DCAR_008128 Daucus carota HOM05D003416 ORTHO05D003886 3.7e-25 121.7 193 34.7
MD10G1302300 Malus domestica HOM05D003416 ORTHO05D003886 3.7e-25 121.7 194 35.6
Peaxi162Scf00079g00103 Petunia axillaris HOM05D003416 ORTHO05D003886 3.7e-25 121.7 194 33.0
Sc05g0008040 Simmondsia chinensis HOM05D003416 ORTHO05D003886 3.7e-25 121.7 194 34.5
Sc05g0010020 Simmondsia chinensis HOM05D003416 ORTHO05D003886 3.7e-25 121.7 194 34.5
Sopen03g005610 Solanum pennellii HOM05D003416 ORTHO05D003886 3.7e-25 121.7 194 33.5
Sabra04G0021300 Salix brachista HOM05D003416 ORTHO05D003886 4.9e-25 121.3 194 33.0
THA.LOC104806278 Tarenaya hassleriana HOM05D003416 ORTHO05D003886 4.9e-25 121.3 220 33.2
VMungo0251G1450 Vigna mungo HOM05D003416 ORTHO05D003886 4.9e-25 121.3 194 35.6
GSVIVG01006715001 Vitis vinifera HOM05D003416 ORTHO05D003886 4.9e-25 121.3 194 34.5
Atru.chr10.1996 Acer truncatum HOM05D003416 ORTHO05D003886 6.3e-25 120.9 194 36.1
AUR62014727 Chenopodium quinoa HOM05D003416 ORTHO05D003886 6.3e-25 120.9 194 34.5
Ca_18491_v3 Cicer arietinum L. HOM05D003416 ORTHO05D003886 6.3e-25 120.9 194 35.6
Ca_29544_v3 Cicer arietinum L. HOM05D003416 ORTHO05D003886 6.3e-25 120.9 194 35.6
Manes.17G039800 Manihot esculenta HOM05D003416 ORTHO05D003886 6.3e-25 120.9 194 34.5
CAN.G569.26 Capsicum annuum HOM05D003416 ORTHO05D003886 8.3e-25 120.6 194 34.0
Duzib192G0173 Durio zibethinus HOM05D003416 ORTHO05D003886 8.3e-25 120.6 194 35.1
MBI02_g35908_MAGBIO Magnolia biondii HOM05D003416 ORTHO05D003886 8.3e-25 120.6 194 35.1
CSS0014754 Camellia sinensis var. sinensis HOM05D003416 ORTHO05D003886 1.1e-24 120.2 194 34.0
DCAR_004200 Daucus carota HOM05D003416 ORTHO05D003886 1.1e-24 120.2 194 34.0
Duzib160G0023 Durio zibethinus HOM05D003416 ORTHO05D003886 1.1e-24 120.2 194 34.5
Glyma.08G058200 Glycine max HOM05D003416 ORTHO05D003886 1.1e-24 120.2 194 36.1
Hma1.2p1_1363F.1_g278350 Hydrangea macrophylla HOM05D003416 ORTHO05D003886 1.1e-24 120.2 194 35.6
PGSC0003DMG400002086 Solanum tuberosum HOM05D003416 ORTHO05D003886 1.1e-24 120.2 194 33.5
MSTRG.13154 Avicennia marina HOM05D003416 ORTHO05D003886 1.4e-24 119.8 194 32.5
Cpa.g.sc27.113 Carica papaya HOM05D003416 ORTHO05D003886 1.4e-24 119.8 194 36.1
Dinv40502 Davidia involucrata HOM05D003416 ORTHO05D003886 1.4e-24 119.8 194 35.6
FAN16G3314 Fragaria x ananassa HOM05D003416 ORTHO05D003886 1.4e-24 119.8 194 33.5
Gohir.A10G020300 Gossypium hirsutum HOM05D003416 ORTHO05D003886 1.4e-24 119.8 194 34.5
Nitab4.5_0003893g0020 Nicotiana tabacum HOM05D003416 ORTHO05D003886 1.4e-24 119.8 194 33.0
Oeu033889.1 Olea europaea HOM05D003416 ORTHO05D003886 1.4e-24 119.8 194 33.0
PGR042G3105 Punica granatum HOM05D003416 ORTHO05D003886 1.4e-24 119.8 194 35.6
RcHm_v2.0_Chr5g0006591 Rosa chinensis HOM05D003416 ORTHO05D003886 1.4e-24 119.8 194 33.5
AUR62016909 Chenopodium quinoa HOM05D003416 ORTHO05D003886 1.8e-24 119.4 194 34.5
FvH4_3g04140 Fragaria vesca HOM05D003416 ORTHO05D003886 1.8e-24 119.4 194 33.5
FAN11G2070 Fragaria x ananassa HOM05D003416 ORTHO05D003886 1.8e-24 119.4 194 33.5
FAN25G2192 Fragaria x ananassa HOM05D003416 ORTHO05D003886 1.8e-24 119.4 194 33.5
Gorai.011G022200 Gossypium raimondii HOM05D003416 ORTHO05D003886 1.8e-24 119.4 194 34.0
Solyc02g080270.3 Solanum lycopersicum HOM05D003416 ORTHO05D003886 1.8e-24 119.4 226 32.3
THA.LOC104812756 Tarenaya hassleriana HOM05D003416 ORTHO05D003886 1.8e-24 119.4 194 35.6
Glyma.07G191000 Glycine max HOM05D003416 ORTHO05D003886 2.4e-24 119.0 194 34.5
Nitab4.5_0009389g0010 Nicotiana tabacum HOM05D003416 ORTHO05D003886 2.4e-24 119.0 194 34.5
Phvul.002G223000 Phaseolus vulgaris HOM05D003416 ORTHO05D003886 2.4e-24 119.0 194 35.1
Sp6g03940 Schrenkiella parvula HOM05D003416 ORTHO05D003886 2.4e-24 119.0 194 34.0
TPR.G32409 Trifolium pratense HOM05D003416 ORTHO05D003886 2.4e-24 119.0 194 35.6
Lsat_1_v5_gn_2_102821 Lactuca sativa HOM05D003416 ORTHO05D003886 3.2e-24 118.6 194 34.0
Lj1P1227T90 Lonicera japonica HOM05D003416 ORTHO05D003886 3.2e-24 118.6 194 32.5
Psat7g110520 Pisum sativum HOM05D003416 ORTHO05D003886 3.2e-24 118.6 194 37.1
AagrBONN_evm.TU.Sc2ySwM_228.2425 Anthoceros agrestis HOM05D003416 ORTHO05D003886 4.1e-24 118.2 194 34.0
AL7G32460 Arabidopsis lyrata HOM05D003416 ORTHO05D003886 4.1e-24 118.2 194 34.5
AT4G21560 Arabidopsis thaliana HOM05D003416 ORTHO05D003886 4.1e-24 118.2 194 34.5
Cc02_g11530 Coffea canephora HOM05D003416 ORTHO05D003886 4.1e-24 118.2 194 32.0
PRCOL_00004236 Prasinoderma coloniale HOM05D003416 ORTHO05D003886 4.1e-24 118.2 192 33.9
Eucgr.D00708 Eucalyptus grandis HOM05D003416 ORTHO05D003886 5.4e-24 117.9 194 33.5
Solyc03g031750.2 Solanum lycopersicum HOM05D003416 ORTHO05D003886 5.4e-24 117.9 194 33.0
EL10Ac8g20617 Beta vulgaris HOM05D003416 ORTHO05D003886 7.0e-24 117.5 194 34.0
CARHR228240 Cardamine hirsuta HOM05D003416 ORTHO05D003886 7.0e-24 117.5 194 34.5
Migut.M01295 Erythranthe guttata HOM05D003416 ORTHO05D003886 7.0e-24 117.5 194 34.5
Medtr4g090890 Medicago truncatula HOM05D003416 ORTHO05D003886 7.0e-24 117.5 194 36.6
Peaxi162Scf00262g00025 Petunia axillaris HOM05D003416 ORTHO05D003886 7.0e-24 117.5 218 32.6
TWI38G1155 Tripterygium wilfordii HOM05D003416 ORTHO05D003886 7.0e-24 117.5 194 34.0
Aa31LG9G9440 Aethionema arabicum HOM05D003416 ORTHO05D003886 9.2e-24 117.1 194 34.0
ATR1149G025 Amborella trichopoda HOM05D003416 ORTHO05D003886 9.2e-24 117.1 194 35.1
arahy.Tifrunner.gnm1.ann1.UIJ4RE Arachis hypogaea HOM05D003416 ORTHO05D003886 9.2e-24 117.1 194 34.0
CDE11G0918 Ceratophyllum demersum HOM05D003416 ORTHO05D003886 9.2e-24 117.1 194 33.5
Gohir.A09G071000 Gossypium hirsutum HOM05D003416 ORTHO05D003886 1.2e-23 116.7 194 34.5
Gohir.D09G070800 Gossypium hirsutum HOM05D003416 ORTHO05D003886 1.2e-23 116.7 194 34.5
Gorai.006G085600 Gossypium raimondii HOM05D003416 ORTHO05D003886 1.2e-23 116.7 194 34.5
arahy.Tifrunner.gnm1.ann1.0PJ706 Arachis hypogaea HOM05D003416 ORTHO05D003886 1.6e-23 116.3 195 35.4
CANSAT56G2779 Cannabis sativa HOM05D003416 ORTHO05D003886 1.6e-23 116.3 194 32.0
Carub.0006s3297 Capsella rubella HOM05D003416 ORTHO05D003886 1.6e-23 116.3 194 34.0
Carub.0007s1985 Capsella rubella HOM05D003416 ORTHO05D003886 1.6e-23 116.3 194 34.0
QL05p081861 Quercus lobata HOM05D003416 ORTHO05D003886 1.6e-23 116.3 194 36.6
AL6G48580 Arabidopsis lyrata HOM05D003416 ORTHO05D003886 2.0e-23 115.9 194 34.0
MSTRG.14644 Avicennia marina HOM05D003416 ORTHO05D003886 2.0e-23 115.9 194 32.0
EL10Ac9g22917 Beta vulgaris HOM05D003416 ORTHO05D003886 2.0e-23 115.9 194 33.5
CDE02G3166 Ceratophyllum demersum HOM05D003416 ORTHO05D003886 2.0e-23 115.9 194 33.5
Thhalv10026248m.g Eutrema salsugineum HOM05D003416 ORTHO05D003886 2.0e-23 115.9 194 34.0
FAN21G1434 Fragaria x ananassa HOM05D003416 ORTHO05D003886 2.0e-23 115.9 194 33.0
Lalb_Chr16g0383421 Lupinus albus HOM05D003416 ORTHO05D003886 2.0e-23 115.9 199 33.7
AT4G05000 Arabidopsis thaliana HOM05D003416 ORTHO05D003886 2.7e-23 115.5 194 34.0
Thhalv10028962m.g Eutrema salsugineum HOM05D003416 ORTHO05D003886 2.7e-23 115.5 194 31.4
SGA_v2.0_scaffold49G18264 Striga asiatica HOM05D003416 ORTHO05D003886 2.7e-23 115.5 194 33.0
Cfa000362 Carpinus fangiana HOM05D003416 ORTHO05D003886 3.5e-23 115.2 194 34.0
Sabra11G0030400 Salix brachista HOM05D003416 ORTHO05D003886 3.5e-23 115.2 194 34.0
BcaB01g01862 Brassica carinata HOM05D003416 ORTHO05D003886 4.5e-23 114.8 194 33.5
COL.COLO4_31570 Corchorus olitorius HOM05D003416 ORTHO05D003886 4.5e-23 114.8 194 34.0
TAR629G1153 Trochodendron aralioides HOM05D003416 ORTHO05D003886 4.5e-23 114.8 194 32.5
BcaNung02784 Brassica carinata HOM05D003416 ORTHO05D003886 5.9e-23 114.4 194 33.5
BcaNung02787 Brassica carinata HOM05D003416 ORTHO05D003886 5.9e-23 114.4 194 33.5
C01p15480 Brassica napus HOM05D003416 ORTHO05D003886 5.9e-23 114.4 194 33.5
HanXRQChr06g0163981 Helianthus annuus HOM05D003416 ORTHO05D003886 5.9e-23 114.4 194 33.0
PSO210G7563 Papaver somniferum HOM05D003416 ORTHO05D003886 5.9e-23 114.4 194 35.1
PSO832G0607 Papaver somniferum HOM05D003416 ORTHO05D003886 5.9e-23 114.4 194 35.1
A01p12860 Brassica napus HOM05D003416 ORTHO05D003886 7.8e-23 114.0 194 33.5
BraA01t01230Z Brassica rapa HOM05D003416 ORTHO05D003886 7.8e-23 114.0 194 33.5
A08p15110 Brassica napus HOM05D003416 ORTHO05D003886 1.0e-22 113.6 194 33.5
BolC1t01502H Brassica oleracea HOM05D003416 ORTHO05D003886 1.0e-22 113.6 194 33.5
BraA08t33491Z Brassica rapa HOM05D003416 ORTHO05D003886 1.0e-22 113.6 194 33.5
FAN12G4105 Fragaria x ananassa HOM05D003416 ORTHO05D003886 1.0e-22 113.6 194 32.5
BcaB03g11690 Brassica carinata HOM05D003416 ORTHO05D003886 1.3e-22 113.2 194 33.0
HanXRQChr12g0354091 Helianthus annuus HOM05D003416 ORTHO05D003886 1.3e-22 113.2 194 32.5
TAR627G0574 Trochodendron aralioides HOM05D003416 ORTHO05D003886 1.3e-22 113.2 194 33.5
BcaNung02782 Brassica carinata HOM05D003416 ORTHO05D003886 1.7e-22 112.8 194 33.5
Sp7g19690 Schrenkiella parvula HOM05D003416 ORTHO05D003886 1.7e-22 112.8 194 33.5
Sed0023652 Sechium edule HOM05D003416 ORTHO05D003886 1.7e-22 112.8 194 34.5
MSTRG.7233 Avicennia marina HOM05D003416 ORTHO05D003886 2.3e-22 112.5 194 32.5
Nn1g03918 Nelumbo nucifera HOM05D003416 ORTHO05D003886 2.3e-22 112.5 193 31.6
BraA09t38152Z Brassica rapa HOM05D003416 ORTHO05D003886 2.9e-22 112.1 194 32.0
Nitab4.5_0003343g0050 Nicotiana tabacum HOM05D003416 ORTHO05D003886 2.9e-22 112.1 194 34.5
PSO541G0607 Papaver somniferum HOM05D003416 ORTHO05D003886 2.9e-22 112.1 194 31.4
Potri.011G043800 Populus trichocarpa HOM05D003416 ORTHO05D003886 2.9e-22 112.1 194 33.0
Aqoxy1G02754 Aquilegia oxysepala HOM05D003416 ORTHO05D003886 3.9e-22 111.7 194 32.0
ECA240G1907 Erigeron canadensis HOM05D003416 ORTHO05D003886 3.9e-22 111.7 194 32.5
PSO675G2462 Papaver somniferum HOM05D003416 ORTHO05D003886 3.9e-22 111.7 194 31.4
unitig_26.g9391 Utricularia gibba HOM05D003416 ORTHO05D003886 3.9e-22 111.7 194 32.0
Zm00001eb369840 Zea mays HOM05D003416 ORTHO05D003886 3.9e-22 111.7 195 33.3
BolC3t20607H Brassica oleracea HOM05D003416 ORTHO05D003886 5.0e-22 111.3 194 33.5
Ah.09g236060 Amaranthus hybridus HOM05D003416 ORTHO05D003886 8.6e-22 110.5 194 32.0
SHI02080 Sapria himalayana HOM05D003416 ORTHO05D003886 8.6e-22 110.5 194 31.4
Gohir.D10G021100 Gossypium hirsutum HOM05D003416 ORTHO05D003886 1.1e-21 110.2 182 33.0
Sopen02g024980 Solanum pennellii HOM05D003416 ORTHO05D003886 1.1e-21 110.2 182 32.4
Zm00001eb151450 Zea mays HOM05D003416 ORTHO05D003886 1.5e-21 109.8 195 32.3
A09p25820 Brassica napus HOM05D003416 ORTHO05D003886 1.9e-21 109.4 194 31.4
Os01g0781000 Oryza sativa ssp. japonica HOM05D003416 ORTHO05D003886 1.9e-21 109.4 195 32.3
BcaC04g21363 Brassica carinata HOM05D003416 ORTHO05D003886 2.5e-21 109.0 194 32.0
C09p32700 Brassica napus HOM05D003416 ORTHO05D003886 2.5e-21 109.0 194 32.0
Lalb_Chr05g0218201 Lupinus albus HOM05D003416 ORTHO05D003886 2.5e-21 109.0 220 30.5
Rhsim13G0173800 Rhododendron simsii HOM05D003416 ORTHO05D003886 2.5e-21 109.0 182 32.4
BolC9t56114H Brassica oleracea HOM05D003416 ORTHO05D003886 7.3e-21 107.5 194 32.0
Aa31LG6G3570 Aethionema arabicum HOM05D003416 ORTHO05D003886 9.5e-21 107.1 194 32.5
BcaC01g00693 Brassica carinata HOM05D003416 ORTHO05D003886 9.5e-21 107.1 185 33.5
C03p83260 Brassica napus HOM05D003416 ORTHO05D003886 9.5e-21 107.1 185 33.5
SGA_v2.0_scaffold89G27453 Striga asiatica HOM05D003416 ORTHO05D003886 1.2e-20 106.7 194 30.9
Haze_06563 Corylus avellana HOM05D003416 ORTHO05D003886 4.7e-20 104.8 182 33.0
Cfa026553 Carpinus fangiana HOM05D005677 ORTHO05D006966 2.3e-19 102.4 236 34.3
Nn1g06746 Nelumbo nucifera HOM05D003416 ORTHO05D003886 3.1e-19 102.1 184 31.0
Cre16.g678100 Chlamydomonas reinhardtii HOM05D003416 ORTHO05D003886 4.0e-19 101.7 194 31.4
CARHR252530 Cardamine hirsuta HOM05D003416 ORTHO05D003886 2.2e-17 95.9 165 32.1
Sed0016121 Sechium edule HOM05D003416 ORTHO05D003886 1.3e-14 86.7 181 29.3
Actinidia11805 Actinidia chinensis HOM05D003416 ORTHO05D003886 2.3e-11 75.9 147 31.3
FvH4_4g26030 Fragaria vesca HOM05D003416 ORTHO05D003886 2.3e-11 75.9 124 33.9
FAN12G1347 Fragaria x ananassa HOM05D003416 ORTHO05D003886 3.1e-11 75.5 124 33.9
CARHR215970 Cardamine hirsuta HOM05D003416 ORTHO05D003886 4.0e-11 75.1 200 27.5
CARHR120800 Cardamine hirsuta HOM05D003416 ORTHO05D003886 4.4e-10 71.6 116 35.3
unitig_749.g13628 Utricularia gibba HOM05D003416 ORTHO05D003886 1.3e-09 70.1 162 29.6
PGSC0003DMG400011283 Solanum tuberosum HOM05D003416 ORTHO05D003886 4.6e-07 61.6 129 25.6
CAN.G322.3 Capsicum annuum HOM05D003416 ORTHO05D003886 3.0e-06 58.9 110 32.7
Hma1.2p1_0734F.1_g210350 Hydrangea macrophylla HOM05D001602 ORTHO05D001470 3.9e-06 58.5 104 36.5
SalBow4G0583 Salvia bowleyana HOM05D003416 ORTHO05D003886 3.9e-06 58.5 99 28.3
SalBow4G1647 Salvia bowleyana HOM05D003416 ORTHO05D003886 3.9e-06 58.5 99 28.3


User provided reference genes

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