Gene: AT4G21560

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT4G21560
  • Transcript Identifier AT4G21560.1
  • Gene Type Coding gene
  • Location Chr4 : 11469037-11469666 : negative

Gene Family Information

  • ID HOM05D003416
  • #Genes/#Species 200/97
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT4G21560.1
  • symbol VPS28-1
  • Alias VPS28,vacuolar protein sorting 28
  • full_name vacuolar protein sorting-associated protein 28 homolog 1
  • uniprot O65421

Descriptions

  • Description vacuolar protein sorting-associated protein-like protein
  • Computational description vacuolar protein sorting-associated protein 28 homolog 1 (VPS28-1); CONTAINS InterPro DOMAIN/s: Vacuolar protein sorting-associated, VPS28, N-terminal (InterPro:IPR017898), Vacuolar protein sorting-associated, VPS28, C-terminal (InterPro:IPR017899), Vacuolar protein sorting-associated, VPS28 (InterPro:IPR007143); BEST Arabidopsis thaliana protein match is: Vacuolar protein sorting-associated protein VPS28 family protein (TAIR:AT4G05000.2); Has 388 Blast hits to 387 proteins in 178 species: Archae - 0; Bacteria - 0; Metazoa - 133; Fungi - 146; Plants - 72; Viruses - 0; Other Eukaryotes - 37 (source: NCBI BLink).
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0043328
IBA
Gene Ontologyprotein transport to vacuole involved in ubiquitin-dependent protein catabolic process via the multivesicular body sorting pathway1
GO:0015031
IEA
GOA Databaseprotein transport
GO:0032509
IEA
GOA Databaseendosome transport via multivesicular body sorting pathway
GO:0032509
IEA
InterProendosome transport via multivesicular body sorting pathway

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005515
IPI
Gene Ontologyprotein binding2
GO:0044877
IBA
Gene Ontologyprotein-containing complex binding1

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005634
ISM
Gene Ontologynucleus
GO:0000813
IEA
GOA DatabaseESCRT I complex
GO:0000813
ISS, IBA
Gene OntologyESCRT I complex1 3
GO:0000813
IEA
InterProESCRT I complex
GO:0005794
IDA
Gene OntologyGolgi apparatus4
GO:0005802
IDA
Gene Ontologytrans-Golgi network4
GO:0005829
HDA
Gene Ontologycytosol5
GO:0005768
IEA
GOA Databaseendosome

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR007143 Vacuolar protein sorting-associated Vps28
IPR037202 ESCRT assembly domain
IPR037206 VPS28, C-terminal domain superfamily
IPR038358 VPS28, N-terminal domain superfamily
Mapman id Description
22.4.1.1.2 Vesicle trafficking.endocytic trafficking.ESCRT-mediated sorting.ESCRT-I complex.component VPS28