Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa023121 Carpinus fangiana HOM05D003906 ORTHO05D004776 0.0e+00 1335.1 673 100.0
CBR_g30766 Chara braunii HOM05D000019 ORTHO05D000048 1.2e-49 202.2 495 30.3
Mapoly0002s0237 Marchantia polymorpha HOM05D003906 ORTHO05D004776 1.7e-43 181.8 320 30.0
Pp3c19_1530 Physcomitrium patens HOM05D003906 ORTHO05D004776 5.6e-42 176.8 294 35.4
PRCOL_00002342 Prasinoderma coloniale HOM05D003906 ORTHO05D004776 7.3e-42 176.4 439 29.6
CARHR034240 Cardamine hirsuta HOM05D003906 ORTHO05D004776 1.6e-41 175.3 321 33.0
Cre09.g387801 Chlamydomonas reinhardtii HOM05D003906 ORTHO05D004776 3.6e-41 174.1 447 27.7
Pp3c16_23970 Physcomitrium patens HOM05D003906 ORTHO05D004776 4.8e-41 173.7 490 28.2
SMO236G0134 Selaginella moellendorffii HOM05D003906 ORTHO05D004776 3.1e-40 171.0 324 30.9
BcaB03g13663 Brassica carinata HOM05D003906 ORTHO05D004776 6.9e-40 169.9 453 29.1
Medtr4g032800 Medicago truncatula HOM05D003906 ORTHO05D004776 6.9e-40 169.9 316 33.2
Potri.013G108400 Populus trichocarpa HOM05D003906 ORTHO05D004776 9.0e-40 169.5 306 34.0
ATR1136G046 Amborella trichopoda HOM05D003906 ORTHO05D004776 1.5e-39 168.7 322 30.1
C06p11170 Brassica napus HOM05D003906 ORTHO05D004776 1.5e-39 168.7 298 34.2
PSO170G2127 Papaver somniferum HOM05D003906 ORTHO05D004776 2.6e-39 167.9 317 31.5
HPP92_001193 Vanilla planifolia HOM05D003906 ORTHO05D004776 2.6e-39 167.9 296 34.1
BcaC08g43739 Brassica carinata HOM05D003906 ORTHO05D004776 3.4e-39 167.5 298 34.2
BolC6t36252H Brassica oleracea HOM05D003906 ORTHO05D004776 3.4e-39 167.5 298 34.2
BraA09t38715Z Brassica rapa HOM05D003906 ORTHO05D004776 9.9e-39 166.0 298 33.9
PSO017G0948 Papaver somniferum HOM05D003906 ORTHO05D004776 9.9e-39 166.0 317 31.2
BcaB07g33091 Brassica carinata HOM05D003906 ORTHO05D004776 1.3e-38 165.6 298 33.6
A09p31780 Brassica napus HOM05D003906 ORTHO05D004776 1.3e-38 165.6 298 33.9
BolC5t32471H Brassica oleracea HOM05D003906 ORTHO05D004776 1.7e-38 165.2 323 32.8
Sp1g30230 Schrenkiella parvula HOM05D003906 ORTHO05D004776 1.7e-38 165.2 318 32.4
TWI59G1118 Tripterygium wilfordii HOM05D003906 ORTHO05D004776 1.7e-38 165.2 484 27.9
Ca_19699_v3 Cicer arietinum L. HOM05D003906 ORTHO05D004776 2.2e-38 164.9 294 33.0
Eucgr.F02579 Eucalyptus grandis HOM05D003906 ORTHO05D004776 2.2e-38 164.9 323 32.8
Zm00001eb243840 Zea mays HOM05D003906 ORTHO05D004776 2.2e-38 164.9 314 33.4
Pp3c25_15350 Physcomitrium patens HOM05D003906 ORTHO05D004776 2.9e-38 164.5 486 27.8
Psat7g226120 Pisum sativum HOM05D003906 ORTHO05D004776 2.9e-38 164.5 319 32.3
AT1G35470 Arabidopsis thaliana HOM05D003906 ORTHO05D004776 4.9e-38 163.7 484 28.1
A05p23780 Brassica napus HOM05D003906 ORTHO05D004776 6.4e-38 163.3 323 32.8
BraA05t21248Z Brassica rapa HOM05D003906 ORTHO05D004776 6.4e-38 163.3 323 32.8
Cre01.g007150 Chlamydomonas reinhardtii HOM05D003906 ORTHO05D004776 8.4e-38 162.9 596 25.8
Nitab4.5_0009321g0030 Nicotiana tabacum HOM05D003906 ORTHO05D004776 8.4e-38 162.9 318 31.1
QL02p025746 Quercus lobata HOM05D003906 ORTHO05D004776 8.4e-38 162.9 316 30.4
Aa31LG6G8750 Aethionema arabicum HOM05D003906 ORTHO05D004776 1.1e-37 162.5 298 34.6
Lj3g0000257 Lotus japonicus HOM05D003906 ORTHO05D004776 1.1e-37 162.5 485 27.0
Lalb_Chr01g0000071 Lupinus albus HOM05D003906 ORTHO05D004776 1.1e-37 162.5 313 32.6
TPR.G34173 Trifolium pratense HOM05D003906 ORTHO05D004776 1.1e-37 162.5 294 33.7
Peaxi162Scf00076g00225 Petunia axillaris HOM05D003906 ORTHO05D004776 1.4e-37 162.2 317 32.2
Cfa012932 Carpinus fangiana HOM05D003906 ORTHO05D000991 3.2e-37 161.0 297 32.3
arahy.Tifrunner.gnm1.ann1.NDRV14 Arachis hypogaea HOM05D003906 ORTHO05D004776 4.2e-37 160.6 316 30.7
Actinidia23018 Actinidia chinensis HOM05D003906 ORTHO05D004776 5.4e-37 160.2 461 25.8
Zm00001eb182000 Zea mays HOM05D003906 ORTHO05D004776 5.4e-37 160.2 328 32.6
Hund16785 Selenicereus undatus HOM05D003906 ORTHO05D004776 7.1e-37 159.8 316 29.7
Thhalv10001818m.g Eutrema salsugineum HOM05D003906 ORTHO05D004776 1.2e-36 159.1 466 27.9
Solyc03g033380.3 Solanum lycopersicum HOM05D003906 ORTHO05D004776 1.6e-36 158.7 318 31.8
VMungo1127G1719 Vigna mungo HOM05D003906 ORTHO05D004776 2.1e-36 158.3 294 32.7
BcaC05g27736 Brassica carinata HOM05D003906 ORTHO05D004776 2.7e-36 157.9 317 32.5
C05p37240 Brassica napus HOM05D003906 ORTHO05D004776 2.7e-36 157.9 317 32.5
Carub.0001s3308 Capsella rubella HOM05D003906 ORTHO05D004776 2.7e-36 157.9 319 30.7
Manes.02G196200 Manihot esculenta HOM05D003906 ORTHO05D004776 2.7e-36 157.9 296 31.4
TAR628G0992 Trochodendron aralioides HOM05D003906 ORTHO05D004776 2.7e-36 157.9 303 31.7
Os02g0556600 Oryza sativa ssp. japonica HOM05D003906 ORTHO05D004776 3.5e-36 157.5 306 31.0
Prupe.1G552200 Prunus persica HOM05D003906 ORTHO05D004776 3.5e-36 157.5 457 27.1
Rhsim06G0114100 Rhododendron simsii HOM05D003906 ORTHO05D004776 6.0e-36 156.8 485 26.8
Sopen03g006150 Solanum pennellii HOM05D003906 ORTHO05D004776 6.0e-36 156.8 296 32.8
Ah.05g178390 Amaranthus hybridus HOM05D003906 ORTHO05D004776 7.9e-36 156.4 317 31.5
Sp6g08200 Schrenkiella parvula HOM05D003906 ORTHO05D004776 7.9e-36 156.4 318 30.8
PGR042G0234 Punica granatum HOM05D003906 ORTHO05D004776 1.0e-35 156.0 316 31.6
Migut.C01295 Erythranthe guttata HOM05D003906 ORTHO05D004776 1.3e-35 155.6 297 31.3
Hma1.2p1_0342F.1_g130710 Hydrangea macrophylla HOM05D003906 ORTHO05D004776 1.3e-35 155.6 312 30.8
CAN.G354.51 Capsicum annuum HOM05D003906 ORTHO05D004776 1.8e-35 155.2 318 30.5
Cc10_g10260 Coffea canephora HOM05D003906 ORTHO05D004776 2.3e-35 154.8 293 32.1
FvH4_5g32270 Fragaria vesca HOM05D003906 ORTHO05D004776 2.3e-35 154.8 467 27.6
Aqoxy5G02955 Aquilegia oxysepala HOM05D003906 ORTHO05D004776 3.0e-35 154.5 320 30.3
BraA03t12055Z Brassica rapa HOM05D003906 ORTHO05D004776 3.0e-35 154.5 297 32.7
AL1G50340 Arabidopsis lyrata HOM05D003906 ORTHO05D004776 3.9e-35 154.1 502 27.5
Glyma.08G238500 Glycine max HOM05D003906 ORTHO05D004776 3.9e-35 154.1 294 32.3
C03p34490 Brassica napus HOM05D003906 ORTHO05D004776 5.1e-35 153.7 297 32.3
CsaV3_5G040450 Cucumis sativus L. HOM05D003906 ORTHO05D004776 5.1e-35 153.7 347 30.3
Phvul.011G000900 Phaseolus vulgaris HOM05D003906 ORTHO05D004776 6.7e-35 153.3 310 31.6
THA.LOC104816477 Tarenaya hassleriana HOM05D003906 ORTHO05D004776 6.7e-35 153.3 457 27.4
Carub.0006s2784 Capsella rubella HOM05D003906 ORTHO05D004776 8.7e-35 152.9 343 29.7
ECA247G1339 Erigeron canadensis HOM05D003906 ORTHO05D004776 8.7e-35 152.9 328 30.8
Gorai.009G264700 Gossypium raimondii HOM05D003906 ORTHO05D004776 8.7e-35 152.9 299 32.4
AL6G42970 Arabidopsis lyrata HOM05D003906 ORTHO05D004776 1.9e-34 151.8 294 32.0
BcaC01g04722 Brassica carinata HOM05D003906 ORTHO05D004776 1.9e-34 151.8 297 32.3
BolC3t15761H Brassica oleracea HOM05D003906 ORTHO05D004776 1.9e-34 151.8 297 32.3
CSS0049725 Camellia sinensis var. sinensis HOM05D003906 ORTHO05D004776 1.9e-34 151.8 311 29.6
Dinv04083 Davidia involucrata HOM05D003906 ORTHO05D004776 2.5e-34 151.4 477 25.6
Gohir.D05G252500 Gossypium hirsutum HOM05D003906 ORTHO05D004776 2.5e-34 151.4 299 32.4
MELO3C022219.2 Cucumis melo HOM05D003906 ORTHO05D004776 4.3e-34 150.6 347 30.0
Glyma.12G000900 Glycine max HOM05D003906 ORTHO05D004776 5.6e-34 150.2 455 27.7
GSVIVG01001786001 Vitis vinifera HOM05D003906 ORTHO05D004776 5.6e-34 150.2 271 32.8
A03p28530 Brassica napus HOM05D003906 ORTHO05D004776 7.4e-34 149.8 298 32.2
unitig_749.g13881 Utricularia gibba HOM05D003906 ORTHO05D004776 7.4e-34 149.8 317 28.4
CSS0022245 Camellia sinensis var. sinensis HOM05D003906 ORTHO05D004776 9.6e-34 149.4 472 25.2
Dinv41741 Davidia involucrata HOM05D003906 ORTHO05D004776 9.6e-34 149.4 291 29.9
SalBow7G1596 Salvia bowleyana HOM05D003906 ORTHO05D004776 9.6e-34 149.4 318 28.6
CDE08G1205 Ceratophyllum demersum HOM05D003906 ORTHO05D004776 1.3e-33 149.1 320 31.6
Gohir.A05G251300 Gossypium hirsutum HOM05D003906 ORTHO05D004776 1.3e-33 149.1 358 28.8
Ciclev10001078m.g Citrus clementina HOM05D003906 ORTHO05D004776 1.6e-33 148.7 316 30.1
AT4G09340 Arabidopsis thaliana HOM05D003906 ORTHO05D004776 2.1e-33 148.3 293 31.4
CiPaw.08G001800 Carya illinoinensis HOM05D003906 ORTHO05D004776 2.1e-33 148.3 329 28.9
Nitab4.5_0000130g0080 Nicotiana tabacum HOM05D003906 ORTHO05D004776 2.1e-33 148.3 297 31.0
Atru.chr2.1825 Acer truncatum HOM05D003906 ORTHO05D004776 2.8e-33 147.9 457 26.5
BcaB01g02792 Brassica carinata HOM05D003906 ORTHO05D004776 2.8e-33 147.9 297 31.3
Sed0011736 Sechium edule HOM05D003906 ORTHO05D004776 2.8e-33 147.9 334 30.2
DCAR_001451 Daucus carota HOM05D003906 ORTHO05D004776 4.8e-33 147.1 300 31.7
Duzib177G0129 Durio zibethinus HOM05D003906 ORTHO05D004776 4.8e-33 147.1 297 31.3
Manes.18G104100 Manihot esculenta HOM05D003906 ORTHO05D004776 8.1e-33 146.4 456 26.8
Oeu051791.1 Olea europaea HOM05D003906 ORTHO05D004776 1.1e-32 146.0 301 30.2
Gorai.006G130100 Gossypium raimondii HOM05D003906 ORTHO05D004776 1.4e-32 145.6 297 31.0
Gohir.D09G112300 Gossypium hirsutum HOM05D003906 ORTHO05D004776 2.4e-32 144.8 297 30.6
HanXRQChr04g0109631 Helianthus annuus HOM05D003906 ORTHO05D004776 5.3e-32 143.7 310 29.7
MD15G1410300 Malus domestica HOM05D003906 ORTHO05D004776 5.3e-32 143.7 321 29.3
Gohir.A09G115500 Gossypium hirsutum HOM05D003906 ORTHO05D004776 6.9e-32 143.3 297 30.6
MSTRG.1555 Avicennia marina HOM05D003906 ORTHO05D004776 1.5e-31 142.1 296 31.1
arahy.Tifrunner.gnm1.ann1.AC170Q Arachis hypogaea HOM05D003906 ORTHO05D004776 2.0e-31 141.7 359 27.0
Oeu064077.1 Olea europaea HOM05D003906 ORTHO05D004776 9.9e-31 139.4 540 25.6
SGA_v2.0_scaffold24G10576 Striga asiatica HOM05D003906 ORTHO05D004776 1.3e-30 139.0 354 27.1
Thecc.08G187700 Theobroma cacao HOM05D003906 ORTHO05D004776 3.8e-30 137.5 299 30.8
FAN18G2269 Fragaria x ananassa HOM05D003906 ORTHO05D004776 4.9e-30 137.1 498 26.3
Lsat_1_v5_gn_1_12460 Lactuca sativa HOM05D003906 ORTHO05D004776 6.4e-30 136.7 321 27.1
MBI06_g32171_MAGBIO Magnolia biondii HOM05D003906 ORTHO05D004776 4.2e-29 134.0 278 29.9
Sabra19G0091700 Salix brachista HOM05D003906 ORTHO05D004776 6.0e-28 130.2 366 27.0
CARHR260350 Cardamine hirsuta HOM05D003906 ORTHO05D004776 7.9e-28 129.8 237 31.2
FAN04G2445 Fragaria x ananassa HOM05D003906 ORTHO05D004776 1.8e-27 128.6 465 25.6
Nn5g27566 Nelumbo nucifera HOM05D003906 ORTHO05D004776 1.8e-27 128.6 185 35.7
AUR62023516 Chenopodium quinoa HOM05D003906 ORTHO05D004776 2.3e-27 128.3 318 28.3
vmacro12471 Vaccinium macrocarpon HOM05D003906 ORTHO05D004776 3.0e-27 127.9 390 27.4
CDE02G3748 Ceratophyllum demersum HOM05D003906 ORTHO05D004776 1.9e-26 125.2 238 31.9
AUR62004621 Chenopodium quinoa HOM05D003906 ORTHO05D004776 1.9e-26 125.2 318 27.4
EL10Ac1g00112 Beta vulgaris HOM05D003906 ORTHO05D004776 4.3e-26 124.0 317 26.5
CSS0005180 Camellia sinensis var. sinensis HOM05D003906 ORTHO05D004776 4.3e-26 124.0 215 31.2
MD08G1220100 Malus domestica HOM05D003906 ORTHO05D004776 5.6e-26 123.6 459 25.7
Sabra13G0093600 Salix brachista HOM05D003906 ORTHO05D004776 5.6e-26 123.6 171 37.4
Potri.019G080800 Populus trichocarpa HOM05D003906 ORTHO05D004776 2.8e-25 121.3 231 32.5
Sc23g0001390 Simmondsia chinensis HOM05D003906 ORTHO05D004776 2.8e-25 121.3 229 31.4
RcHm_v2.0_Chr7g0228461 Rosa chinensis HOM05D003906 ORTHO05D004776 4.0e-24 117.5 187 31.6
Haze_21286 Corylus avellana HOM05D003906 ORTHO05D004776 5.3e-24 117.1 482 24.7
FAN08G0013 Fragaria x ananassa HOM05D006455 ORTHO05D004776 5.3e-24 117.1 171 34.5
Duzib116G0916 Durio zibethinus HOM05D003906 ORTHO05D004776 1.2e-23 115.9 296 28.0
Lj4C483G1 Lonicera japonica HOM05D003906 ORTHO05D004776 1.5e-23 115.5 339 26.5
AT4G09200 Arabidopsis thaliana HOM05D003906 ORTHO05D004776 2.2e-22 111.7 298 27.5
AT4G09310 Arabidopsis thaliana HOM05D003906 ORTHO05D004776 2.2e-22 111.7 298 27.5
SHI26286 Sapria himalayana HOM05D003906 ORTHO05D004776 9.3e-21 106.3 205 29.8
Migut.C00143 Erythranthe guttata HOM05D003906 ORTHO05D004776 1.0e-19 102.8 295 27.5
MCO01G564 Micromonas commoda HOM05D003906 ORTHO05D004776 1.3e-19 102.4 296 26.7
COL.COLO4_24795 Corchorus olitorius HOM05D003906 ORTHO05D004776 2.3e-19 101.7 150 34.0
AT4G09250 Arabidopsis thaliana HOM05D003906 ORTHO05D004776 1.5e-18 99.0 279 26.9
FAN13G2487 Fragaria x ananassa HOM05D003906 ORTHO05D004776 3.3e-18 97.8 156 32.7
SEGI_33732 Sequoiadendron giganteum HOM05D003906 ORTHO05D004776 1.5e-15 89.0 93 44.1
SabraUnG0004400 Salix brachista HOM05D003906 ORTHO05D004776 2.0e-15 88.6 162 30.2
AagrBONN_evm.TU.Sc2ySwM_369.175 Anthoceros agrestis HOM05D003906 ORTHO05D004776 3.4e-15 87.8 143 35.0
SEGI_19081 Sequoiadendron giganteum HOM05D003906 ORTHO05D004776 2.9e-14 84.7 125 33.6
A03p28510 Brassica napus HOM05D003906 ORTHO05D004776 5.0e-14 84.0 219 29.2
BolC3t15755H Brassica oleracea HOM05D003906 ORTHO05D004776 5.0e-14 84.0 219 28.3
SEGI_28086 Sequoiadendron giganteum HOM05D003906 ORTHO05D004776 1.2e-12 79.3 115 36.5
C03p34460 Brassica napus HOM05D003906 ORTHO05D004776 2.1e-12 78.6 246 26.0
BcaB01g02795 Brassica carinata HOM05D003906 ORTHO05D004776 6.1e-12 77.0 222 26.1
AagrBONN_evm.TU.Sc2ySwM_362.2414 Anthoceros agrestis HOM05D007564 ORTHO05D009975 5.1e-11 73.9 138 31.2
unitig_32.g11182 Utricularia gibba HOM05D000008 ORTHO05D000005 1.3e-09 69.3 179 26.3
CBR_g4334 Chara braunii HOM05D004874 ORTHO05D006796 1.2e-07 62.8 132 31.1
Haze_25029 Corylus avellana HOM05D004874 ORTHO05D006796 1.5e-07 62.4 142 26.1
FAN23G3027 Fragaria x ananassa HOM05D004874 ORTHO05D006796 1.7e-06 58.9 170 27.6
RcHm_v2.0_Chr2g0116231 Rosa chinensis HOM05D004874 ORTHO05D006796 1.7e-06 58.9 146 27.4
GSVIVG01022217001 Vitis vinifera HOM05D004874 ORTHO05D006796 2.9e-06 58.2 135 25.9
Thhalv10000015m.g Eutrema salsugineum HOM05D004874 ORTHO05D006796 3.8e-06 57.8 163 27.0
DCAR_028625 Daucus carota HOM05D003906 ORTHO05D004776 5.0e-06 57.4 72 37.5
Eucgr.H04838 Eucalyptus grandis HOM05D004874 ORTHO05D006796 8.5e-06 56.6 146 25.3
Pp3c22_200 Physcomitrium patens HOM05D003906 ORTHO05D003636 8.5e-06 56.6 100 34.0


User provided reference genes

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