Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa022568 Carpinus fangiana HOM05D005041 ORTHO05D006003 4.0e-202 708.0 380 100.0
Haze_13460 Corylus avellana HOM05D005041 ORTHO05D006003 2.1e-195 685.6 388 96.1
CiPaw.04G135200 Carya illinoinensis HOM05D005041 ORTHO05D006003 3.7e-184 648.3 380 91.6
Thecc.01G157600 Theobroma cacao HOM05D005041 ORTHO05D006003 2.7e-174 615.5 380 78.2
GSVIVG01020787001 Vitis vinifera HOM05D005041 ORTHO05D006003 3.5e-174 615.1 380 78.7
Atru.chr6.3564 Acer truncatum HOM05D005041 ORTHO05D006003 2.3e-173 612.5 380 77.1
CSS0038733 Camellia sinensis var. sinensis HOM05D005041 ORTHO05D006003 5.0e-173 611.3 380 75.8
Dinv26517 Davidia involucrata HOM05D005041 ORTHO05D006003 5.0e-173 611.3 379 76.5
Manes.01G129200 Manihot esculenta HOM05D005041 ORTHO05D006003 2.5e-172 609.0 379 82.1
MELO3C031066.2 Cucumis melo HOM05D005041 ORTHO05D006003 3.3e-172 608.6 380 77.1
COL.COLO4_33676 Corchorus olitorius HOM05D005041 ORTHO05D006003 1.6e-171 606.3 380 76.6
Sed0005186 Sechium edule HOM05D005041 ORTHO05D006003 1.6e-171 606.3 380 77.1
Actinidia11183 Actinidia chinensis HOM05D005041 ORTHO05D006003 2.1e-171 605.9 380 75.8
Hma1.2p1_0178F.1_g078240 Hydrangea macrophylla HOM05D005041 ORTHO05D006003 1.4e-170 603.2 379 75.7
Ciclev10015615m.g Citrus clementina HOM05D005041 ORTHO05D006003 3.1e-170 602.1 378 75.7
QL08p043305 Quercus lobata HOM05D005041 ORTHO05D006003 3.1e-170 602.1 379 86.5
TWI63G0392 Tripterygium wilfordii HOM05D005041 ORTHO05D006003 5.2e-170 601.3 378 75.7
Nn3g21016 Nelumbo nucifera HOM05D005041 ORTHO05D006003 1.5e-169 599.7 380 75.5
Eucgr.K01189 Eucalyptus grandis HOM05D005041 ORTHO05D006003 1.3e-168 596.7 380 73.7
TAR626G0242 Trochodendron aralioides HOM05D005041 ORTHO05D006003 2.9e-168 595.5 380 82.6
PGR142G0148 Punica granatum HOM05D005041 ORTHO05D006003 2.4e-167 592.4 375 73.9
CsaV3_6G037940 Cucumis sativus L. HOM05D005041 ORTHO05D006003 4.1e-167 591.7 382 75.4
Gorai.011G123100 Gossypium raimondii HOM05D005041 ORTHO05D006003 7.0e-167 590.9 380 75.0
MD09G1156800 Malus domestica HOM05D005041 ORTHO05D006003 7.0e-167 590.9 389 74.3
Prupe.3G170000 Prunus persica HOM05D005041 ORTHO05D006003 7.0e-167 590.9 380 83.4
MD17G1143300 Malus domestica HOM05D005041 ORTHO05D006003 2.7e-166 589.0 380 83.7
Gohir.D10G111500 Gossypium hirsutum HOM05D005041 ORTHO05D006003 3.5e-166 588.6 380 74.7
Lalb_Chr20g0114161 Lupinus albus HOM05D005041 ORTHO05D006003 1.9e-164 582.8 375 74.1
Gohir.A10G154500 Gossypium hirsutum HOM05D005041 ORTHO05D006003 5.6e-164 581.3 380 73.4
CANSAT11G1484 Cannabis sativa HOM05D005041 ORTHO05D006003 9.5e-164 580.5 381 82.7
Potri.014G141700 Populus trichocarpa HOM05D005041 ORTHO05D006003 3.6e-163 578.6 380 83.2
Cc05_g09060 Coffea canephora HOM05D005041 ORTHO05D006003 1.4e-162 576.6 381 71.9
DCAR_013571 Daucus carota HOM05D005041 ORTHO05D006003 3.4e-161 572.0 380 71.6
Manes.02G087100 Manihot esculenta HOM05D005041 ORTHO05D006003 2.9e-160 568.9 380 71.6
RcHm_v2.0_Chr2g0150441 Rosa chinensis HOM05D005041 ORTHO05D006003 3.2e-159 565.5 380 80.0
Peaxi162Scf00828g00019 Petunia axillaris HOM05D005041 ORTHO05D006003 4.1e-159 565.1 380 71.8
FAN09G1464 Fragaria x ananassa HOM05D000054 ORTHO05D006003 4.6e-158 561.6 376 80.1
ClCG09G022250 Citrullus lanatus HOM05D005041 ORTHO05D006003 2.3e-157 559.3 389 71.0
PSO541G3312 Papaver somniferum HOM05D005041 ORTHO05D006003 3.0e-157 558.9 378 68.8
THA.LOC104826236 Tarenaya hassleriana HOM05D005041 ORTHO05D006003 3.0e-157 558.9 371 79.8
Solyc05g006470.4 Solanum lycopersicum HOM05D005041 ORTHO05D006003 8.6e-157 557.4 381 70.9
Sp4g13380 Schrenkiella parvula HOM05D005041 ORTHO05D006003 1.1e-156 557.0 374 70.3
PSO675G8631 Papaver somniferum HOM05D005041 ORTHO05D006003 1.9e-156 556.2 378 68.5
Ca_14633_v3 Cicer arietinum L. HOM05D005041 ORTHO05D006003 3.3e-156 555.4 375 80.3
BcaB01g04071 Brassica carinata HOM05D005041 ORTHO05D006003 1.2e-155 553.5 374 69.5
C03p20380 Brassica napus HOM05D005041 ORTHO05D006003 2.1e-155 552.7 374 69.0
BolC3t14416H Brassica oleracea HOM05D005041 ORTHO05D006003 2.1e-155 552.7 374 69.0
A03p17270 Brassica napus HOM05D005041 ORTHO05D006003 2.8e-155 552.4 374 69.5
BraA03t11001Z Brassica rapa HOM05D005041 ORTHO05D006003 2.8e-155 552.4 374 69.5
Carub.0004s1211 Capsella rubella HOM05D005041 ORTHO05D006003 6.2e-155 551.2 372 70.4
MSTRG.15060 Avicennia marina HOM05D005041 ORTHO05D006003 1.1e-154 550.4 379 70.2
BcaB02g10347 Brassica carinata HOM05D005041 ORTHO05D006003 1.1e-154 550.4 374 69.3
AT2G30910 Arabidopsis thaliana HOM05D005041 ORTHO05D006003 1.4e-154 550.1 372 70.4
Ah.01g004760 Amaranthus hybridus HOM05D005041 ORTHO05D006003 1.8e-154 549.7 380 69.2
Glyma.08G311700 Glycine max HOM05D005041 ORTHO05D006003 2.4e-154 549.3 375 79.7
Glyma.18G103800 Glycine max HOM05D005041 ORTHO05D006003 2.4e-154 549.3 375 79.7
BcaC02g11169 Brassica carinata HOM05D005041 ORTHO05D006003 3.1e-154 548.9 374 69.0
C04p19760 Brassica napus HOM05D005041 ORTHO05D006003 3.1e-154 548.9 374 69.0
BolC4t23509H Brassica oleracea HOM05D005041 ORTHO05D006003 3.1e-154 548.9 374 69.0
Aqoxy1G01950 Aquilegia oxysepala HOM05D005041 ORTHO05D006003 4.0e-154 548.5 376 70.5
Lj6g0019726 Lotus japonicus HOM05D005041 ORTHO05D006003 5.2e-154 548.1 375 80.3
A05p14760 Brassica napus HOM05D005041 ORTHO05D006003 6.8e-154 547.7 374 69.3
Medtr3g049070 Medicago truncatula HOM05D005041 ORTHO05D006003 1.2e-153 547.0 375 78.9
MBI06_g08528_MAGBIO Magnolia biondii HOM05D005041 ORTHO05D006003 1.5e-153 546.6 381 69.8
AL4G25850 Arabidopsis lyrata HOM05D005041 ORTHO05D006003 3.4e-153 545.4 372 69.9
AL283U10030 Arabidopsis lyrata HOM05D005041 ORTHO05D006003 1.3e-152 543.5 372 69.6
Sed0006581 Sechium edule HOM05D005041 ORTHO05D006003 1.7e-152 543.1 342 76.9
ECA234G0116 Erigeron canadensis HOM05D005041 ORTHO05D006003 2.9e-152 542.3 382 66.0
Phvul.005G127400 Phaseolus vulgaris HOM05D005041 ORTHO05D006003 2.9e-152 542.3 375 78.9
Nitab4.5_0004310g0020 Nicotiana tabacum HOM05D005041 ORTHO05D006003 4.9e-152 541.6 419 64.2
EL10Ac9g21025 Beta vulgaris HOM05D005041 ORTHO05D006003 8.4e-152 540.8 383 67.9
VMungo1080G0034 Vigna mungo HOM05D005041 ORTHO05D006003 1.4e-151 540.0 375 78.4
BraA05t20405Z Brassica rapa HOM05D005041 ORTHO05D006003 2.4e-151 539.3 376 68.4
HanXRQChr16g0518211 Helianthus annuus HOM05D005041 ORTHO05D006003 2.4e-151 539.3 382 67.0
Migut.D00514 Erythranthe guttata HOM05D005041 ORTHO05D006003 9.2e-151 537.3 384 68.8
FAN14G1924 Fragaria x ananassa HOM05D000054 ORTHO05D006003 1.6e-150 536.6 357 73.9
Psat5g186840 Pisum sativum HOM05D005041 ORTHO05D006003 1.6e-150 536.6 375 78.1
Aa31LG5G6010 Aethionema arabicum HOM05D005041 ORTHO05D006003 1.3e-149 533.5 413 66.3
Os02g0817200 Oryza sativa ssp. japonica HOM05D005041 ORTHO05D006003 1.3e-149 533.5 375 66.1
Zm00001eb258930 Zea mays HOM05D005041 ORTHO05D006003 1.7e-149 533.1 376 66.0
Lsat_1_v5_gn_4_52360 Lactuca sativa HOM05D005041 ORTHO05D006003 3.9e-149 531.9 384 66.4
Nitab4.5_0002312g0010 Nicotiana tabacum HOM05D005041 ORTHO05D006003 5.1e-149 531.6 380 77.4
vmacro12428 Vaccinium macrocarpon HOM05D005041 ORTHO05D006003 1.5e-148 530.0 390 67.7
TPR.G13543 Trifolium pratense HOM05D005041 ORTHO05D006003 2.5e-148 529.3 393 66.9
Hund00824 Selenicereus undatus HOM05D005041 ORTHO05D006003 2.1e-147 526.2 378 74.1
arahy.Tifrunner.gnm1.ann1.5LHA9P Arachis hypogaea HOM05D005041 ORTHO05D006003 3.6e-147 525.4 379 77.0
arahy.Tifrunner.gnm1.ann1.RC242R Arachis hypogaea HOM05D005041 ORTHO05D006003 3.6e-147 525.4 379 77.0
Dinv06276 Davidia involucrata HOM05D005041 ORTHO05D006003 6.2e-147 524.6 328 77.1
AT2G31300 Arabidopsis thaliana HOM05D005041 ORTHO05D006003 1.1e-146 523.9 361 69.8
FAN02G2360 Fragaria x ananassa HOM05D000054 ORTHO05D006003 1.2e-145 520.4 384 69.0
SGA_v2.0_scaffold1G00710 Striga asiatica HOM05D005041 ORTHO05D006003 3.4e-145 518.8 380 66.6
SGA_v2.0_scaffold8G04656 Striga asiatica HOM05D005041 ORTHO05D006003 3.4e-145 518.8 380 66.6
Glyma.10G216300 Glycine max HOM05D005041 ORTHO05D006003 2.9e-144 515.8 338 73.1
Lj2A374G38 Lonicera japonica HOM05D005041 ORTHO05D006003 2.1e-142 509.6 358 70.7
Sc12g0003800 Simmondsia chinensis HOM05D005041 ORTHO05D006003 2.1e-142 509.6 380 73.9
Duzib187G1062 Durio zibethinus HOM05D005041 ORTHO05D006003 7.8e-142 507.7 380 68.2
CDE10G0970 Ceratophyllum demersum HOM05D005041 ORTHO05D006003 1.9e-140 503.1 370 65.1
Phvul.006G036500 Phaseolus vulgaris HOM05D005041 ORTHO05D006003 1.8e-138 496.5 375 74.1
unitig_37.g12857 Utricularia gibba HOM05D005041 ORTHO05D006003 3.1e-138 495.7 369 65.3
VMungo0540G2345 Vigna mungo HOM05D005041 ORTHO05D006003 2.0e-137 493.0 336 70.8
HPP92_025809 Vanilla planifolia HOM05D005041 ORTHO05D006003 3.2e-135 485.7 373 65.1
A04p23600 Brassica napus HOM05D005041 ORTHO05D006003 2.3e-133 479.6 385 61.6
Thhalv10017625m.g Eutrema salsugineum HOM05D005041 ORTHO05D006003 1.9e-132 476.5 322 70.2
CDE10G1309 Ceratophyllum demersum HOM05D005041 ORTHO05D006003 7.4e-132 474.6 370 63.5
C04p60050 Brassica napus HOM05D005041 ORTHO05D006003 1.3e-131 473.8 360 64.7
BolC4t27508H Brassica oleracea HOM05D005041 ORTHO05D006003 1.2e-129 467.2 370 62.7
BcaB06g28392 Brassica carinata HOM05D005041 ORTHO05D006003 8.4e-128 461.1 336 66.7
FvH4_6g37551 Fragaria vesca HOM05D005041 ORTHO05D006003 4.8e-123 445.3 281 85.8
BraA04t17886Z Brassica rapa HOM05D005041 ORTHO05D006003 1.8e-122 443.4 367 61.0
Lju124A34T49 Lonicera japonica HOM05D005041 ORTHO05D006003 4.0e-122 442.2 281 73.3
SMO364G0091 Selaginella moellendorffii HOM05D005041 ORTHO05D006003 1.2e-118 430.6 378 55.3
Cpa.g.sc50.61 Carica papaya HOM05D005041 ORTHO05D006003 1.2e-113 414.1 253 77.1
Mapoly0090s0056 Marchantia polymorpha HOM05D005041 ORTHO05D006003 3.0e-109 399.4 387 53.7
Mapoly0116s0052 Marchantia polymorpha HOM05D005041 ORTHO05D006003 5.1e-109 398.7 387 51.2
Sopen05g002420 Solanum pennellii HOM05D005041 ORTHO05D006003 6.7e-109 398.3 257 73.2
Pp3c19_12930 Physcomitrium patens HOM05D005041 ORTHO05D006003 1.5e-108 397.1 378 57.4
Pp3c18_4810 Physcomitrium patens HOM05D005041 ORTHO05D006003 2.5e-108 396.4 383 57.4
AagrBONN_evm.TU.Sc2ySwM_228.2899 Anthoceros agrestis HOM05D005041 ORTHO05D006003 2.2e-107 393.3 368 53.0
Zm00001eb191400 Zea mays HOM05D005041 ORTHO05D006003 2.3e-101 373.2 253 66.8
AUR62024003 Chenopodium quinoa HOM05D005041 ORTHO05D006003 2.1e-94 350.1 309 67.0
ATR0787G051 Amborella trichopoda HOM05D005041 ORTHO05D006003 4.5e-89 332.4 191 80.1
Thhalv10017010m.g Eutrema salsugineum HOM05D005041 ORTHO05D006003 8.8e-85 318.2 377 46.2
AUR62031794 Chenopodium quinoa HOM05D005041 ORTHO05D006003 1.8e-82 310.5 307 52.8
Nn6g34435 Nelumbo nucifera HOM05D005041 ORTHO05D006003 3.1e-82 309.7 221 69.2
Sabra14G0106900 Salix brachista HOM05D005041 ORTHO05D006003 2.9e-80 303.1 221 71.0
SalBow4G0308 Salvia bowleyana HOM05D005041 ORTHO05D006003 3.1e-74 283.1 214 68.2
Actinidia12824 Actinidia chinensis HOM05D005041 ORTHO05D006003 2.6e-68 263.5 154 80.5
CBR_g18699 Chara braunii HOM05D005041 ORTHO05D006003 2.9e-64 250.0 537 31.8
Oeu032123.1 Olea europaea HOM05D005041 ORTHO05D006003 4.0e-61 239.6 147 75.5
Sopen05g002410 Solanum pennellii HOM05D005041 ORTHO05D006003 4.3e-55 219.5 275 45.8
CARHR124910 Cardamine hirsuta HOM05D005041 ORTHO05D006003 4.7e-54 216.1 111 87.4
CARHR124390 Cardamine hirsuta HOM05D005041 ORTHO05D006003 2.0e-52 210.7 111 85.6
SEGI_31471 Sequoiadendron giganteum HOM05D005041 ORTHO05D006003 1.7e-48 197.6 140 65.7
Cfa026893 Carpinus fangiana HOM05D005041 ORTHO05D006003 1.6e-46 191.0 373 32.2
SHI23137 Sapria himalayana HOM05D005041 ORTHO05D006003 1.7e-32 144.4 134 53.7
Duzib147G0812 Durio zibethinus HOM05D005041 ORTHO05D006003 2.9e-27 127.1 172 45.9
TAR383G0169 Trochodendron aralioides HOM05D005041 ORTHO05D006003 7.8e-25 119.0 72 72.2
Duzib147G0224 Durio zibethinus HOM05D005041 ORTHO05D006003 5.1e-24 116.3 59 89.8
Cre16.g648100 Chlamydomonas reinhardtii HOM05D005041 ORTHO05D006003 7.3e-23 112.5 286 31.1
SEGI_23574 Sequoiadendron giganteum HOM05D005041 ORTHO05D006003 4.8e-22 109.8 66 74.2
Haze_27289 Corylus avellana HOM05D005041 ORTHO05D006003 5.4e-18 96.3 286 30.8
CARHR285180 Cardamine hirsuta HOM05D005041 ORTHO05D006003 1.1e-15 88.6 52 71.2
Lsat_1_v5_gn_9_20280 Lactuca sativa HOM05D005041 ORTHO05D002973 1.3e-14 85.1 78 53.8
SEGI_36522 Sequoiadendron giganteum HOM05D005041 ORTHO05D006003 4.0e-13 80.1 57 61.4
AUR62031783 Chenopodium quinoa HOM05D004756 ORTHO05D005793 1.2e-12 78.6 48 77.1
CARHR059870 Cardamine hirsuta HOM05D005041 ORTHO05D006003 2.5e-10 70.9 55 61.8
Glyma.02G162651 Glycine max HOM05D005041 ORTHO05D006003 1.3e-08 65.1 37 73.0


User provided reference genes

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