Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa022079 Carpinus fangiana HOM05D004354 ORTHO05D124722 0.0e+00 1565.8 852 100.0
PRCOL_00005121 Prasinoderma coloniale HOM05D000722 ORTHO05D000590 7.4e-15 87.0 272 28.3
MCO03G390 Micromonas commoda HOM05D004354 ORTHO05D005409 8.2e-14 83.6 246 27.2
Cfa014637 Carpinus fangiana HOM05D004354 ORTHO05D005409 1.8e-13 82.4 248 22.6
CDE05G0895 Ceratophyllum demersum HOM05D004354 ORTHO05D005409 2.6e-12 78.6 252 23.4
SMO351G0175 Selaginella moellendorffii HOM05D004354 ORTHO05D005409 3.4e-12 78.2 177 28.2
arahy.Tifrunner.gnm1.ann1.SG72Z3 Arachis hypogaea HOM05D004354 ORTHO05D005409 1.4e-10 72.8 476 21.8
Lj3g0017215 Lotus japonicus HOM05D004354 ORTHO05D005409 2.7e-09 68.6 476 20.6
MD17G1236500 Malus domestica HOM05D004354 ORTHO05D005409 2.7e-09 68.6 80 36.2
ATR0763G074 Amborella trichopoda HOM05D004354 ORTHO05D005409 4.7e-09 67.8 478 19.9
Zm00001eb322160 Zea mays HOM05D004354 ORTHO05D005409 4.7e-09 67.8 80 32.5
EL10Ac9g20792 Beta vulgaris HOM05D004354 ORTHO05D005409 1.0e-08 66.6 80 33.8
MELO3C013588.2 Cucumis melo HOM05D004354 ORTHO05D005409 1.4e-08 66.2 80 35.0
Lsat_1_v5_gn_4_66820 Lactuca sativa HOM05D004354 ORTHO05D005409 1.4e-08 66.2 80 36.2
Hund01030 Selenicereus undatus HOM05D004354 ORTHO05D005409 1.4e-08 66.2 73 37.0
AUR62033735 Chenopodium quinoa HOM05D004354 ORTHO05D005409 1.8e-08 65.9 80 35.0
CsaV3_6G015220 Cucumis sativus L. HOM05D004354 ORTHO05D005409 1.8e-08 65.9 80 33.8
Lalb_Chr19g0135191 Lupinus albus HOM05D004354 ORTHO05D005409 2.3e-08 65.5 78 35.9
MD09G1244500 Malus domestica HOM05D004354 ORTHO05D005409 2.3e-08 65.5 76 36.8
CARHR236110 Cardamine hirsuta HOM05D004354 ORTHO05D005409 3.0e-08 65.1 73 37.0
Pp3c21_16510 Physcomitrium patens HOM05D004354 ORTHO05D005409 3.0e-08 65.1 89 36.0
Rhsim06G0139400 Rhododendron simsii HOM05D004354 ORTHO05D005409 3.0e-08 65.1 70 37.1
vmacro12326 Vaccinium macrocarpon HOM05D004354 ORTHO05D005409 3.0e-08 65.1 70 37.1
AL3G53730 Arabidopsis lyrata HOM05D004354 ORTHO05D005409 3.9e-08 64.7 80 33.8
AT2G20650 Arabidopsis thaliana HOM05D004354 ORTHO05D005409 3.9e-08 64.7 80 33.8
CARHR111300 Cardamine hirsuta HOM05D004354 ORTHO05D005409 3.9e-08 64.7 73 35.6
CiPaw.03G179000 Carya illinoinensis HOM05D004354 ORTHO05D005409 3.9e-08 64.7 73 35.6
Thhalv10024798m.g Eutrema salsugineum HOM05D004354 ORTHO05D005409 3.9e-08 64.7 73 37.0
Mapoly0093s0076 Marchantia polymorpha HOM05D004354 ORTHO05D005409 3.9e-08 64.7 72 37.5
BcaB03g12570 Brassica carinata HOM05D004354 ORTHO05D005409 5.1e-08 64.3 73 34.2
Ca_09445_v3 Cicer arietinum L. HOM05D004354 ORTHO05D005409 5.1e-08 64.3 478 20.3
THA.LOC104804057 Tarenaya hassleriana HOM05D004354 ORTHO05D005409 5.1e-08 64.3 73 39.7
AL7G24220 Arabidopsis lyrata HOM05D004354 ORTHO05D005409 6.7e-08 63.9 73 37.0
arahy.Tifrunner.gnm1.ann1.6AZK3P Arachis hypogaea HOM05D004354 ORTHO05D005409 6.7e-08 63.9 80 31.2
Pp3c18_8870 Physcomitrium patens HOM05D004354 ORTHO05D005409 6.7e-08 63.9 72 38.9
PGR142G0821 Punica granatum HOM05D004354 ORTHO05D005409 6.7e-08 63.9 80 32.5
SEGI_11328 Sequoiadendron giganteum HOM05D004354 ORTHO05D005409 6.7e-08 63.9 82 36.6
TWI59G0686 Tripterygium wilfordii HOM05D004354 ORTHO05D005409 6.7e-08 63.9 73 37.0
Actinidia11091 Actinidia chinensis HOM05D004354 ORTHO05D005409 8.8e-08 63.5 70 37.1
AT4G28370 Arabidopsis thaliana HOM05D004354 ORTHO05D005409 8.8e-08 63.5 73 37.0
A08p20090 Brassica napus HOM05D004354 ORTHO05D005409 8.8e-08 63.5 73 34.2
BraA08t33968Z Brassica rapa HOM05D004354 ORTHO05D005409 8.8e-08 63.5 73 34.2
Glyma.12G205300 Glycine max HOM05D004354 ORTHO05D005409 8.8e-08 63.5 80 32.5
Prupe.3G139300 Prunus persica HOM05D004354 ORTHO05D005409 8.8e-08 63.5 72 37.5
Sed0026522 Sechium edule HOM05D004354 ORTHO05D005409 8.8e-08 63.5 82 34.1
Sc21g0003070 Simmondsia chinensis HOM05D004354 ORTHO05D005409 8.8e-08 63.5 73 35.6
THA.LOC104824696 Tarenaya hassleriana HOM05D004354 ORTHO05D005409 8.8e-08 63.5 73 37.0
arahy.Tifrunner.gnm1.ann1.7S1AZB Arachis hypogaea HOM05D004354 ORTHO05D005409 1.1e-07 63.2 70 35.7
MSTRG.6802 Avicennia marina HOM05D004354 ORTHO05D005409 1.1e-07 63.2 70 37.1
BcaC06g36756 Brassica carinata HOM05D004354 ORTHO05D005409 1.1e-07 63.2 73 35.6
A07p00120 Brassica napus HOM05D004354 ORTHO05D005409 1.1e-07 63.2 73 35.6
C07p00280 Brassica napus HOM05D004354 ORTHO05D005409 1.1e-07 63.2 73 35.6
BolC7t40478H Brassica oleracea HOM05D004354 ORTHO05D005409 1.1e-07 63.2 73 35.6
BraA07t27805Z Brassica rapa HOM05D004354 ORTHO05D005409 1.1e-07 63.2 73 35.6
ECA234G2175 Erigeron canadensis HOM05D004354 ORTHO05D005409 1.1e-07 63.2 80 32.5
Sp3g33900 Schrenkiella parvula HOM05D004354 ORTHO05D005409 1.1e-07 63.2 73 35.6
BcaC07g38328 Brassica carinata HOM05D004354 ORTHO05D005409 1.5e-07 62.8 73 34.2
C08p10830 Brassica napus HOM05D004354 ORTHO05D005409 1.5e-07 62.8 73 34.2
BolC8t48758H Brassica oleracea HOM05D004354 ORTHO05D005409 1.5e-07 62.8 73 34.2
CANSAT64G2319 Cannabis sativa HOM05D004354 ORTHO05D005409 1.5e-07 62.8 76 34.2
CBR_g36920 Chara braunii HOM05D004354 ORTHO05D005409 1.5e-07 62.8 81 34.6
Ciclev10014745m.g Citrus clementina HOM05D004354 ORTHO05D005409 1.5e-07 62.8 72 36.1
Glyma.06G290800 Glycine max HOM05D004354 ORTHO05D005409 1.5e-07 62.8 70 35.7
HanXRQChr05g0143301 Helianthus annuus HOM05D004354 ORTHO05D005409 1.5e-07 62.8 80 32.5
Sp7g26330 Schrenkiella parvula HOM05D004354 ORTHO05D005409 1.5e-07 62.8 73 35.6
Sed0007610 Sechium edule HOM05D004354 ORTHO05D005409 1.5e-07 62.8 70 38.6
Solyc07g053850.3 Solanum lycopersicum HOM05D004354 ORTHO05D005409 1.5e-07 62.8 76 32.9
Sopen07g027820 Solanum pennellii HOM05D004354 ORTHO05D005409 1.5e-07 62.8 76 32.9
Aa31LG2G22230 Aethionema arabicum HOM05D004354 ORTHO05D005409 2.0e-07 62.4 73 35.6
Carub.0003s3517 Capsella rubella HOM05D004354 ORTHO05D005409 2.0e-07 62.4 73 35.6
Cpa.g.sc83.63 Carica papaya HOM05D004354 ORTHO05D005409 2.0e-07 62.4 70 35.7
Ca_18937_v3 Cicer arietinum L. HOM05D004354 ORTHO05D005409 2.0e-07 62.4 70 35.7
Haze_13201 Corylus avellana HOM05D004354 ORTHO05D005409 2.0e-07 62.4 70 35.7
FvH4_6g26490 Fragaria vesca HOM05D004354 ORTHO05D005409 2.0e-07 62.4 70 35.7
FAN02G3736 Fragaria x ananassa HOM05D004354 ORTHO05D005409 2.0e-07 62.4 70 35.7
FAN05G5576 Fragaria x ananassa HOM05D004354 ORTHO05D005409 2.0e-07 62.4 70 35.7
TWI23G0225 Tripterygium wilfordii HOM05D004354 ORTHO05D005409 2.0e-07 62.4 70 37.1
CSS0000262 Camellia sinensis var. sinensis HOM05D004354 ORTHO05D005409 2.6e-07 62.0 70 35.7
CSS0014582 Camellia sinensis var. sinensis HOM05D004354 ORTHO05D005409 2.6e-07 62.0 70 35.7
Cc05_g07440 Coffea canephora HOM05D004354 ORTHO05D005409 2.6e-07 62.0 70 35.7
Eucgr.K01043 Eucalyptus grandis HOM05D004354 ORTHO05D005409 2.6e-07 62.0 70 35.7
Thhalv10002192m.g Eutrema salsugineum HOM05D004354 ORTHO05D005409 2.6e-07 62.0 73 35.6
Glyma.13G295600 Glycine max HOM05D004354 ORTHO05D005409 2.6e-07 62.0 70 35.7
Gohir.A03G155600 Gossypium hirsutum HOM05D004354 ORTHO05D005409 2.6e-07 62.0 69 36.2
Gohir.D02G178700 Gossypium hirsutum HOM05D004354 ORTHO05D005409 2.6e-07 62.0 69 36.2
Gorai.005G200400 Gossypium raimondii HOM05D004354 ORTHO05D005409 2.6e-07 62.0 69 36.2
PSO541G1897 Papaver somniferum HOM05D004354 ORTHO05D005409 2.6e-07 62.0 69 36.2
PSO675G5152 Papaver somniferum HOM05D004354 ORTHO05D005409 2.6e-07 62.0 69 36.2
Phvul.005G102100 Phaseolus vulgaris HOM05D004354 ORTHO05D005409 2.6e-07 62.0 70 35.7
Potri.007G139300 Populus trichocarpa HOM05D004354 ORTHO05D005409 2.6e-07 62.0 72 37.5
Potri.017G012600 Populus trichocarpa HOM05D004354 ORTHO05D005409 2.6e-07 62.0 70 35.7
VMungo1080G0203 Vigna mungo HOM05D004354 ORTHO05D005409 2.6e-07 62.0 70 35.7
Aa31LG8G17560 Aethionema arabicum HOM05D004354 ORTHO05D005409 3.3e-07 61.6 73 35.6
Hma1.2p1_0002F.1_g002080 Hydrangea macrophylla HOM05D004354 ORTHO05D005409 3.3e-07 61.6 70 35.7
Manes.13G144800 Manihot esculenta HOM05D004354 ORTHO05D005409 3.3e-07 61.6 70 35.7
Medtr4g078525 Medicago truncatula HOM05D004354 ORTHO05D005409 3.3e-07 61.6 70 35.7
TPR.G2846 Trifolium pratense HOM05D004354 ORTHO05D005409 3.3e-07 61.6 70 35.7
arahy.Tifrunner.gnm1.ann1.5TEV2E Arachis hypogaea HOM05D004354 ORTHO05D005409 4.4e-07 61.2 70 35.7
Glyma.12G116100 Glycine max HOM05D004354 ORTHO05D005409 4.4e-07 61.2 70 35.7
MBI18_g19626_MAGBIO Magnolia biondii HOM05D004354 ORTHO05D005409 4.4e-07 61.2 70 35.7
Psat7g168720 Pisum sativum HOM05D004354 ORTHO05D005409 4.4e-07 61.2 70 35.7
QL08p039658 Quercus lobata HOM05D004354 ORTHO05D005409 4.4e-07 61.2 70 35.7
Lalb_Chr01g0005151 Lupinus albus HOM05D004354 ORTHO05D005409 5.7e-07 60.8 70 35.7
Phvul.011G119730 Phaseolus vulgaris HOM05D004354 ORTHO05D005409 5.7e-07 60.8 70 35.7
RcHm_v2.0_Chr2g0127681 Rosa chinensis HOM05D004354 ORTHO05D005409 5.7e-07 60.8 70 35.7
Thecc.02G182400 Theobroma cacao HOM05D004354 ORTHO05D005409 5.7e-07 60.8 70 37.1
GSVIVG01020571001 Vitis vinifera HOM05D004354 ORTHO05D005409 5.7e-07 60.8 70 34.3
Aqoxy1G02375 Aquilegia oxysepala HOM05D004354 ORTHO05D005409 7.4e-07 60.5 70 34.3
BcaB03g16858 Brassica carinata HOM05D004354 ORTHO05D005409 7.4e-07 60.5 73 34.2
COL.COLO4_05947 Corchorus olitorius HOM05D004354 ORTHO05D005409 7.4e-07 60.5 70 34.3
DCAR_009753 Daucus carota HOM05D004354 ORTHO05D005409 7.4e-07 60.5 70 35.7
Dinv13394 Davidia involucrata HOM05D004354 ORTHO05D005409 7.4e-07 60.5 38 52.6
Lj3g0011593 Lotus japonicus HOM05D004354 ORTHO05D005409 7.4e-07 60.5 70 35.7
Carub.0007s1237 Capsella rubella HOM05D004354 ORTHO05D005409 9.7e-07 60.1 35 57.1
Lalb_Chr03g0029541 Lupinus albus HOM05D004354 ORTHO05D005409 9.7e-07 60.1 70 35.7
unitig_22.g5828 Utricularia gibba HOM05D004354 ORTHO05D005409 9.7e-07 60.1 70 37.1
Lj1A714G27 Lonicera japonica HOM05D004354 ORTHO05D005409 1.3e-06 59.7 70 35.7
Nitab4.5_0001184g0100 Nicotiana tabacum HOM05D004354 ORTHO05D005409 1.3e-06 59.7 70 34.3
Nitab4.5_0006194g0010 Nicotiana tabacum HOM05D004354 ORTHO05D005409 1.3e-06 59.7 111 30.6
PGSC0003DMG400032816 Solanum tuberosum HOM05D004354 ORTHO05D005409 1.3e-06 59.7 70 34.3
Peaxi162Scf00008g00611 Petunia axillaris HOM05D004354 ORTHO05D005409 1.7e-06 59.3 80 31.2
Solyc12g005470.2 Solanum lycopersicum HOM05D004354 ORTHO05D005409 2.8e-06 58.5 111 31.5
Sopen12g001470 Solanum pennellii HOM05D004354 ORTHO05D005409 3.7e-06 58.2 111 31.5


User provided reference genes

Program Settings