Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa021690 Carpinus fangiana HOM05D003321 ORTHO05D005161 0.0e+00 1980.7 1027 100.0
Pp3c9_4400 Physcomitrium patens HOM05D003321 ORTHO05D005161 1.6e-67 262.3 531 32.2
AagrBONN_evm.TU.Sc2ySwM_362.1279 Anthoceros agrestis HOM05D003321 ORTHO05D005161 6.5e-66 256.9 513 32.7
Mapoly0030s0009 Marchantia polymorpha HOM05D003321 ORTHO05D005161 1.1e-65 256.1 496 31.9
SEGI_27754 Sequoiadendron giganteum HOM05D003321 ORTHO05D005161 4.2e-65 254.2 495 32.1
AT3G28730 Arabidopsis thaliana HOM05D003321 ORTHO05D005161 7.2e-65 253.4 519 30.6
SMO356G0125 Selaginella moellendorffii HOM05D003321 ORTHO05D005161 2.1e-64 251.9 531 31.1
Os05g0182600 Oryza sativa ssp. japonica HOM05D003321 ORTHO05D005161 3.6e-64 251.1 523 31.2
arahy.Tifrunner.gnm1.ann1.QM6JB0 Arachis hypogaea HOM05D003321 ORTHO05D005161 1.0e-63 249.6 540 30.0
Os01g0184900 Oryza sativa ssp. japonica HOM05D003321 ORTHO05D005161 1.0e-63 249.6 518 31.1
AagrBONN_evm.TU.Sc2ySwM_362.1417 Anthoceros agrestis HOM05D003321 ORTHO05D005161 2.3e-63 248.4 536 31.5
Aqoxy3G03281 Aquilegia oxysepala HOM05D003321 ORTHO05D005161 3.0e-63 248.1 503 30.6
PGSC0003DMG400018099 Solanum tuberosum HOM05D003321 ORTHO05D005161 1.2e-62 246.1 490 30.2
Medtr5g082570 Medicago truncatula HOM05D003321 ORTHO05D005161 2.6e-62 245.0 553 29.5
CARHR151710 Cardamine hirsuta HOM05D003321 ORTHO05D005161 3.3e-62 244.6 487 30.4
Solyc02g087710.3 Solanum lycopersicum HOM05D003321 ORTHO05D005161 3.3e-62 244.6 490 30.0
Sopen02g032440 Solanum pennellii HOM05D003321 ORTHO05D005161 3.3e-62 244.6 490 30.0
PGSC0003DMG400001414 Solanum tuberosum HOM05D003321 ORTHO05D005161 3.3e-62 244.6 490 30.0
Ca_05956_v3 Cicer arietinum L. HOM05D003321 ORTHO05D005161 4.4e-62 244.2 511 30.5
TPR.G38431 Trifolium pratense HOM05D003321 ORTHO05D005161 4.4e-62 244.2 502 30.9
A06p40380 Brassica napus HOM05D003321 ORTHO05D005161 1.3e-61 242.7 516 29.7
Manes.15G176600 Manihot esculenta HOM05D003321 ORTHO05D005161 1.3e-61 242.7 509 30.1
Hund09520 Selenicereus undatus HOM05D003321 ORTHO05D005161 1.7e-61 242.3 521 30.3
SEGI_13423 Sequoiadendron giganteum HOM05D003321 ORTHO05D005161 1.7e-61 242.3 497 31.4
BcaC06g30900 Brassica carinata HOM05D003321 ORTHO05D005161 2.2e-61 241.9 507 29.8
Ah.11g050340 Amaranthus hybridus HOM05D003321 ORTHO05D005161 2.8e-61 241.5 509 31.6
TWI34G1126 Tripterygium wilfordii HOM05D003321 ORTHO05D005161 2.8e-61 241.5 553 29.3
C07p37670 Brassica napus HOM05D003321 ORTHO05D005161 3.7e-61 241.1 516 29.7
Medtr1g022345 Medicago truncatula HOM05D003321 ORTHO05D005161 3.7e-61 241.1 515 30.1
Potri.004G124000 Populus trichocarpa HOM05D003321 ORTHO05D005161 3.7e-61 241.1 520 30.2
BolC7t44284H Brassica oleracea HOM05D003321 ORTHO05D005161 4.8e-61 240.7 516 29.7
TPR.G20170 Trifolium pratense HOM05D003321 ORTHO05D005161 4.8e-61 240.7 504 30.0
TAR622G1354 Trochodendron aralioides HOM05D003321 ORTHO05D005161 4.8e-61 240.7 520 30.2
Hund02846 Selenicereus undatus HOM05D003321 ORTHO05D005161 6.3e-61 240.4 512 29.9
EL10Ac5g10521 Beta vulgaris HOM05D003321 ORTHO05D005161 8.2e-61 240.0 555 30.6
BcaC03g17525 Brassica carinata HOM05D003321 ORTHO05D005161 8.2e-61 240.0 510 29.4
A02p36020 Brassica napus HOM05D003321 ORTHO05D005161 8.2e-61 240.0 510 29.4
C02p54860 Brassica napus HOM05D003321 ORTHO05D005161 8.2e-61 240.0 510 29.4
BraA06t26956Z Brassica rapa HOM05D003321 ORTHO05D005161 8.2e-61 240.0 510 29.6
Manes.15G172400 Manihot esculenta HOM05D003321 ORTHO05D005161 8.2e-61 240.0 553 29.7
Glyma.03G031900 Glycine max HOM05D003321 ORTHO05D005161 1.1e-60 239.6 510 30.2
Lj2g0002473 Lotus japonicus HOM05D003321 ORTHO05D005161 1.1e-60 239.6 516 30.4
BcaB07g30122 Brassica carinata HOM05D003321 ORTHO05D005161 1.4e-60 239.2 510 29.4
BraA02t08601Z Brassica rapa HOM05D003321 ORTHO05D005161 1.4e-60 239.2 510 29.4
Potri.017G078500 Populus trichocarpa HOM05D003321 ORTHO05D005161 1.4e-60 239.2 508 29.7
HPP92_017969 Vanilla planifolia HOM05D003321 ORTHO05D005161 1.4e-60 239.2 506 30.4
ATR1120G139 Amborella trichopoda HOM05D003321 ORTHO05D005161 1.8e-60 238.8 506 29.8
Nn4g23059 Nelumbo nucifera HOM05D003321 ORTHO05D005161 1.8e-60 238.8 516 29.7
RhsimUnG0055900 Rhododendron simsii HOM05D003321 ORTHO05D005161 1.8e-60 238.8 509 29.7
Sp2g17380 Schrenkiella parvula HOM05D003321 ORTHO05D005161 1.8e-60 238.8 510 29.6
BolC2t11547H Brassica oleracea HOM05D003321 ORTHO05D005161 2.4e-60 238.4 510 29.4
CiPaw.03G029600 Carya illinoinensis HOM05D003321 ORTHO05D005161 2.4e-60 238.4 476 30.3
Lj2g0024928 Lotus japonicus HOM05D003321 ORTHO05D005161 2.4e-60 238.4 575 29.4
PSO591G0346 Papaver somniferum HOM05D003321 ORTHO05D005161 2.4e-60 238.4 514 29.4
PSO832G3448 Papaver somniferum HOM05D003321 ORTHO05D005161 2.4e-60 238.4 514 29.4
Psat6g008440 Pisum sativum HOM05D003321 ORTHO05D005161 2.4e-60 238.4 535 29.7
Aa31LG2G4470 Aethionema arabicum HOM05D003321 ORTHO05D005161 3.1e-60 238.0 499 29.5
AL5G18450 Arabidopsis lyrata HOM05D003321 ORTHO05D005161 3.1e-60 238.0 474 29.3
Peaxi162Scf00129g00539 Petunia axillaris HOM05D003321 ORTHO05D005161 3.1e-60 238.0 493 30.0
CAN.G206.123 Capsicum annuum HOM05D003321 ORTHO05D005161 4.1e-60 237.7 490 29.8
FAN14G0823 Fragaria x ananassa HOM05D003321 ORTHO05D005161 4.1e-60 237.7 523 29.4
GSVIVG01011349001 Vitis vinifera HOM05D003321 ORTHO05D005161 4.1e-60 237.7 494 30.4
BcaC06g33636 Brassica carinata HOM05D003321 ORTHO05D005161 7.0e-60 236.9 508 29.3
Ca_13366_v3 Cicer arietinum L. HOM05D003321 ORTHO05D005161 9.1e-60 236.5 510 29.6
FvH4_6g49210 Fragaria vesca HOM05D003321 ORTHO05D005161 9.1e-60 236.5 505 30.1
FAN09G2289 Fragaria x ananassa HOM05D003321 ORTHO05D005161 9.1e-60 236.5 505 30.5
FAN14G5472 Fragaria x ananassa HOM05D003321 ORTHO05D005161 9.1e-60 236.5 505 30.5
Glyma.01G136100 Glycine max HOM05D003321 ORTHO05D005161 9.1e-60 236.5 510 29.8
Phvul.011G212400 Phaseolus vulgaris HOM05D003321 ORTHO05D005161 1.2e-59 236.1 510 29.8
Psat2g033240 Pisum sativum HOM05D003321 ORTHO05D005161 1.6e-59 235.7 510 30.0
VMungo0464G0737 Vigna mungo HOM05D003321 ORTHO05D005161 1.6e-59 235.7 510 29.8
Oeu037176.3 Olea europaea HOM05D003321 ORTHO05D005161 2.0e-59 235.3 498 30.1
Prupe.3G271500 Prunus persica HOM05D003321 ORTHO05D005161 2.0e-59 235.3 497 29.6
Phvul.004G026200 Phaseolus vulgaris HOM05D003321 ORTHO05D005161 2.7e-59 235.0 510 29.8
QL02p080714 Quercus lobata HOM05D003321 ORTHO05D005161 2.7e-59 235.0 476 29.6
Actinidia06077 Actinidia chinensis HOM05D003321 ORTHO05D005161 3.5e-59 234.6 510 29.2
Atru.chr8.1903 Acer truncatum HOM05D003321 ORTHO05D005161 4.5e-59 234.2 522 29.7
Ciclev10011266m.g Citrus clementina HOM05D003321 ORTHO05D005161 4.5e-59 234.2 507 29.6
SGA_v2.0_scaffold205G41764 Striga asiatica HOM05D003321 ORTHO05D005161 4.5e-59 234.2 511 30.1
Zm00001eb282920 Zea mays HOM05D003321 ORTHO05D005161 4.5e-59 234.2 519 29.9
MSTRG.3218 Avicennia marina HOM05D003321 ORTHO05D005161 5.9e-59 233.8 503 30.6
FAN09G2305 Fragaria x ananassa HOM05D003321 ORTHO05D005161 5.9e-59 233.8 505 29.9
THA.LOC104805449 Tarenaya hassleriana HOM05D003321 ORTHO05D005161 5.9e-59 233.8 495 29.5
Thecc.04G075500 Theobroma cacao HOM05D003321 ORTHO05D005161 5.9e-59 233.8 458 30.3
Migut.H00892 Erythranthe guttata HOM05D003321 ORTHO05D005161 7.7e-59 233.4 520 30.0
Nitab4.5_0003314g0110 Nicotiana tabacum HOM05D003321 ORTHO05D005161 7.7e-59 233.4 492 30.1
VMungo1127G1679 Vigna mungo HOM05D003321 ORTHO05D005161 1.3e-58 232.6 504 29.8
Lsat_1_v5_gn_2_88641 Lactuca sativa HOM05D003321 ORTHO05D005161 1.7e-58 232.3 482 30.3
Lalb_Chr02g0159551 Lupinus albus HOM05D003321 ORTHO05D005161 1.7e-58 232.3 468 29.5
Actinidia23569 Actinidia chinensis HOM05D003321 ORTHO05D005161 2.2e-58 231.9 510 29.2
AUR62011989 Chenopodium quinoa HOM05D003321 ORTHO05D005161 2.2e-58 231.9 565 29.4
MBI17_g17503_MAGBIO Magnolia biondii HOM05D003321 ORTHO05D005161 2.2e-58 231.9 513 30.4
Dinv33721 Davidia involucrata HOM05D003321 ORTHO05D005161 2.9e-58 231.5 458 30.1
ECA234G3709 Erigeron canadensis HOM05D003321 ORTHO05D005161 3.8e-58 231.1 528 28.8
CANSAT64G1196 Cannabis sativa HOM05D003321 ORTHO05D005161 5.0e-58 230.7 494 29.1
FAN02G3930 Fragaria x ananassa HOM05D003321 ORTHO05D005161 5.0e-58 230.7 501 29.7
FAN05G4145 Fragaria x ananassa HOM05D003321 ORTHO05D005161 5.0e-58 230.7 505 29.9
HanXRQChr16g0519581 Helianthus annuus HOM05D003321 ORTHO05D005161 5.0e-58 230.7 528 29.4
Lalb_Chr06g0175461 Lupinus albus HOM05D003321 ORTHO05D005161 5.0e-58 230.7 458 29.9
RcHm_v2.0_Chr2g0169081 Rosa chinensis HOM05D003321 ORTHO05D005161 5.0e-58 230.7 495 28.7
Gohir.D09G021100 Gossypium hirsutum HOM05D003321 ORTHO05D005161 8.5e-58 229.9 458 29.9
Nitab4.5_0009739g0020 Nicotiana tabacum HOM05D003321 ORTHO05D005161 8.5e-58 229.9 506 29.6
TWI60G1051 Tripterygium wilfordii HOM05D003321 ORTHO05D005161 8.5e-58 229.9 510 28.6
COL.COLO4_25165 Corchorus olitorius HOM05D003321 ORTHO05D005161 1.1e-57 229.6 482 29.7
Haze_14579 Corylus avellana HOM05D003321 ORTHO05D005161 1.1e-57 229.6 497 28.6
MD17G1047600 Malus domestica HOM05D003321 ORTHO05D005161 1.5e-57 229.2 495 29.5
Sed0022026 Sechium edule HOM05D003321 ORTHO05D005161 1.5e-57 229.2 503 29.0
MELO3C009890.2 Cucumis melo HOM05D003321 ORTHO05D005161 3.2e-57 228.0 494 28.9
DCAR_011159 Daucus carota HOM05D003321 ORTHO05D005161 3.2e-57 228.0 494 28.9
Duzib264G0140 Durio zibethinus HOM05D003321 ORTHO05D005161 3.2e-57 228.0 458 29.7
Lju41A25T61 Lonicera japonica HOM05D003321 ORTHO05D005161 3.2e-57 228.0 495 29.5
Carub.0005s0728 Capsella rubella HOM05D003321 ORTHO05D005161 4.2e-57 227.6 512 29.5
CiPaw.04G019600 Carya illinoinensis HOM05D003321 ORTHO05D005161 4.2e-57 227.6 497 29.2
Gohir.A09G021800 Gossypium hirsutum HOM05D003321 ORTHO05D005161 4.2e-57 227.6 458 29.9
MD09G1047500 Malus domestica HOM05D003321 ORTHO05D005161 4.2e-57 227.6 495 29.7
Eucgr.I01920 Eucalyptus grandis HOM05D003321 ORTHO05D005161 5.5e-57 227.3 516 29.5
AUR62032308 Chenopodium quinoa HOM05D003321 ORTHO05D005161 7.2e-57 226.9 558 30.1
CsaV3_3G041690 Cucumis sativus L. HOM05D003321 ORTHO05D005161 9.4e-57 226.5 494 28.7
Sc17g0001240 Simmondsia chinensis HOM05D003321 ORTHO05D005161 9.4e-57 226.5 500 29.4
HanXRQChr02g0056421 Helianthus annuus HOM05D003321 ORTHO05D005161 1.6e-56 225.7 495 29.7
Thhalv10003803m.g Eutrema salsugineum HOM05D003321 ORTHO05D005161 2.7e-56 224.9 510 28.4
arahy.Tifrunner.gnm1.ann1.T0AAPV Arachis hypogaea HOM05D003321 ORTHO05D005161 3.6e-56 224.6 499 29.1
Lj7A400T32 Lonicera japonica HOM05D003321 ORTHO05D005161 3.6e-56 224.6 495 30.3
SalBow1G0468 Salvia bowleyana HOM05D003321 ORTHO05D005161 3.6e-56 224.6 559 28.6
Gorai.007G078500 Gossypium raimondii HOM05D003321 ORTHO05D005161 4.7e-56 224.2 500 29.4
Lsat_1_v5_gn_4_46121 Lactuca sativa HOM05D003321 ORTHO05D005161 6.1e-56 223.8 501 29.3
Gohir.D11G073100 Gossypium hirsutum HOM05D003321 ORTHO05D005161 1.0e-55 223.0 500 29.4
Gohir.A11G069100 Gossypium hirsutum HOM05D003321 ORTHO05D005161 1.4e-55 222.6 500 29.4
Migut.K01331 Erythranthe guttata HOM05D003321 ORTHO05D005161 1.8e-55 222.2 561 29.2
PGR142G0788 Punica granatum HOM05D003321 ORTHO05D005161 2.3e-55 221.9 495 29.1
CDE05G0865 Ceratophyllum demersum HOM05D003321 ORTHO05D005161 6.8e-55 220.3 558 28.0
PRCOL_00006095 Prasinoderma coloniale HOM05D003321 ORTHO05D005161 4.4e-54 217.6 456 32.2
CSS0001778 Camellia sinensis var. sinensis HOM05D003321 ORTHO05D005161 1.3e-53 216.1 491 28.5
Gorai.006G024900 Gossypium raimondii HOM05D003321 ORTHO05D005161 1.7e-53 215.7 526 28.7
Sabra17G0069700 Salix brachista HOM05D003321 ORTHO05D005161 8.3e-53 213.4 518 28.0
ClCG10G014840 Citrullus lanatus HOM05D003321 ORTHO05D005161 1.4e-52 212.6 494 28.1
Cre01.g029450 Chlamydomonas reinhardtii HOM05D003321 ORTHO05D005161 2.4e-52 211.8 464 31.5
PSO384G3545 Papaver somniferum HOM05D003321 ORTHO05D005161 4.1e-52 211.1 550 27.8
vmacro05729 Vaccinium macrocarpon HOM05D003321 ORTHO05D005161 9.1e-52 209.9 503 28.8
MCO12G387 Micromonas commoda HOM05D003321 ORTHO05D005161 3.5e-51 208.0 459 30.5
ECA238G2291 Erigeron canadensis HOM05D003321 ORTHO05D005161 1.7e-50 205.7 496 28.8
unitig_899.g15507 Utricularia gibba HOM05D003321 ORTHO05D005161 4.1e-44 184.5 401 30.9
Zm00001eb337810 Zea mays HOM05D003321 ORTHO05D005161 4.5e-43 181.0 407 30.5
SGA_v2.0_scaffold205G41773 Striga asiatica HOM05D003321 ORTHO05D005161 3.3e-41 174.9 405 27.7
Cc07_g03060 Coffea canephora HOM05D003321 ORTHO05D005161 1.6e-40 172.6 332 29.2
Nitab4.5_0000564g0350 Nicotiana tabacum HOM05D003321 ORTHO05D005161 2.8e-40 171.8 490 26.9
Hma1.2p1_0247F.1_g101800 Hydrangea macrophylla HOM05D003321 ORTHO05D005161 1.3e-37 162.9 455 28.1
Glyma.13G064800 Glycine max HOM05D003321 ORTHO05D005161 2.9e-29 135.2 263 33.5
Lj1g0009615 Lotus japonicus HOM05D003321 ORTHO05D005161 7.0e-28 130.6 334 29.6
Psat3g002600 Pisum sativum HOM05D003321 ORTHO05D004492 7.8e-27 127.1 289 28.7
Thhalv10008631m.g Eutrema salsugineum HOM05D003321 ORTHO05D005161 3.3e-25 121.7 214 31.3
Rhsim05G0106500 Rhododendron simsii HOM05D003321 ORTHO05D005161 6.2e-24 117.5 491 22.6
CBR_g20179 Chara braunii HOM05D003321 ORTHO05D005161 2.4e-20 105.5 539 22.8
Cfa007905 Carpinus fangiana HOM05D003321 ORTHO05D005161 1.7e-18 99.4 211 27.5
CDE05G3094 Ceratophyllum demersum HOM05D003321 ORTHO05D005161 7.3e-17 94.0 286 28.3
CSS0018217 Camellia sinensis var. sinensis HOM05D003321 ORTHO05D005161 2.4e-15 89.0 237 24.9
CSS0041948 Camellia sinensis var. sinensis HOM05D003321 ORTHO05D005161 4.0e-15 88.2 237 24.9
Duzib147G1608 Durio zibethinus HOM05D003321 ORTHO05D005161 2.6e-14 85.5 458 19.7
Aqoxy3G03302 Aquilegia oxysepala HOM05D003321 ORTHO05D019677 7.6e-14 84.0 186 28.0
HanXRQChr04g0102631 Helianthus annuus HOM05D003321 ORTHO05D019677 7.1e-12 77.4 127 32.3
Aqoxy3G00239 Aquilegia oxysepala HOM05D003321 ORTHO05D019677 1.3e-10 73.2 242 27.7
Lsat_1_v5_gn_5_101681 Lactuca sativa HOM05D003321 ORTHO05D000541 9.6e-09 67.0 113 26.5
HanXRQChr06g0173771 Helianthus annuus HOM05D003321 ORTHO05D019677 1.2e-08 66.6 107 32.7
PGSC0003DMG400001413 Solanum tuberosum HOM05D003321 ORTHO05D394828 3.1e-07 62.0 171 27.5
Oeu033336.1 Olea europaea HOM05D003321 ORTHO05D005161 5.2e-07 61.2 196 22.4
HanXRQChr01g0022931 Helianthus annuus HOM05D003321 ORTHO05D019677 9.0e-07 60.5 108 31.5
Cc07_g03050 Coffea canephora HOM05D003321 ORTHO05D005161 1.5e-06 59.7 152 30.9


User provided reference genes

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