Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa021299 Carpinus fangiana HOM05D001378 ORTHO05D121843 1.0e-279 966.1 482 100.0
Haze_14958 Corylus avellana HOM05D001378 ORTHO05D001249 4.3e-20 103.6 71 81.7
Manes.04G094900 Manihot esculenta HOM05D001378 ORTHO05D001249 1.1e-15 89.0 68 75.0
Dinv33263 Davidia involucrata HOM05D001378 ORTHO05D001249 9.3e-15 85.9 75 66.7
CiPaw.04G000600 Carya illinoinensis HOM05D001378 ORTHO05D001249 1.2e-14 85.5 76 68.4
Potri.014G145200 Populus trichocarpa HOM05D001378 ORTHO05D001249 1.2e-14 85.5 73 64.4
GSVIVG01032954001 Vitis vinifera HOM05D001378 ORTHO05D001249 1.8e-13 81.6 76 65.8
COL.COLO4_13398 Corchorus olitorius HOM05D005263 ORTHO05D006891 8.7e-13 79.3 56 80.4
Cc07_g01430 Coffea canephora HOM05D001378 ORTHO05D001249 1.1e-12 79.0 70 65.7
PGR042G1458 Punica granatum HOM05D001378 ORTHO05D001249 1.1e-12 79.0 78 61.5
Oeu048686.1 Olea europaea HOM05D001378 ORTHO05D001249 1.9e-12 78.2 71 60.6
Eucgr.G01919 Eucalyptus grandis HOM05D001378 ORTHO05D001249 2.5e-12 77.8 75 62.7
Gohir.A11G062200 Gossypium hirsutum HOM05D001378 ORTHO05D001249 2.5e-12 77.8 58 77.6
QL02p068584 Quercus lobata HOM05D001378 ORTHO05D001249 2.5e-12 77.8 70 65.7
Ciclev10016269m.g Citrus clementina HOM05D001378 ORTHO05D001249 4.3e-12 77.0 75 58.7
arahy.Tifrunner.gnm1.ann1.1SN9CK Arachis hypogaea HOM05D001378 ORTHO05D001249 9.7e-12 75.9 72 61.1
arahy.Tifrunner.gnm1.ann1.AQDL1Q Arachis hypogaea HOM05D001378 ORTHO05D001249 9.7e-12 75.9 72 61.1
Gohir.D11G066000 Gossypium hirsutum HOM05D001378 ORTHO05D001249 9.7e-12 75.9 75 61.3
Gorai.007G071500 Gossypium raimondii HOM05D001378 ORTHO05D001249 9.7e-12 75.9 75 61.3
Hma1.2p1_0421F.1_g149930 Hydrangea macrophylla HOM05D001378 ORTHO05D001249 9.7e-12 75.9 69 65.2
Thecc.04G050700 Theobroma cacao HOM05D001378 ORTHO05D001249 9.7e-12 75.9 74 63.5
CSS0034415 Camellia sinensis var. sinensis HOM05D001378 ORTHO05D001249 1.3e-11 75.5 69 62.3
CSS0036869 Camellia sinensis var. sinensis HOM05D001378 ORTHO05D001249 1.3e-11 75.5 69 62.3
TAR374G0890 Trochodendron aralioides HOM05D001378 ORTHO05D001249 2.2e-11 74.7 71 60.6
Duzib147G0669 Durio zibethinus HOM05D001378 ORTHO05D001249 2.8e-11 74.3 74 62.2
Medtr7g084590 Medicago truncatula HOM05D001378 ORTHO05D001249 2.8e-11 74.3 75 58.7
Duzib187G1369 Durio zibethinus HOM05D001378 ORTHO05D001249 3.7e-11 73.9 74 62.2
Sabra14G0109400 Salix brachista HOM05D001378 ORTHO05D001249 3.7e-11 73.9 89 55.1
Glyma.16G045900 Glycine max HOM05D001378 ORTHO05D001249 6.3e-11 73.2 56 75.0
MD09G1001200 Malus domestica HOM05D001378 ORTHO05D001249 6.3e-11 73.2 58 70.7
Prupe.3G315000 Prunus persica HOM05D001378 ORTHO05D001249 8.2e-11 72.8 66 60.6
Psat3g091920 Pisum sativum HOM05D007245 ORTHO05D009049 1.1e-10 72.4 52 76.9
Lj7A619T46 Lonicera japonica HOM05D001378 ORTHO05D001249 1.4e-10 72.0 52 71.2
Nn3g16222 Nelumbo nucifera HOM05D001378 ORTHO05D001249 1.4e-10 72.0 48 75.0
VMungo1383G3606 Vigna mungo HOM05D001378 ORTHO05D001249 1.4e-10 72.0 58 70.7
Ca_08229_v3 Cicer arietinum L. HOM05D001378 ORTHO05D001249 1.8e-10 71.6 52 76.9
Lj3g0005758 Lotus japonicus HOM05D001378 ORTHO05D001249 1.8e-10 71.6 93 50.5
TPR.G31660 Trifolium pratense HOM05D001378 ORTHO05D001249 1.8e-10 71.6 56 71.4
EL10Ac6g13900 Beta vulgaris HOM05D001378 ORTHO05D001249 3.1e-10 70.9 48 72.9
Atru.chr6.2721 Acer truncatum HOM05D001378 ORTHO05D001249 4.1e-10 70.5 44 79.5
MD17G1004400 Malus domestica HOM05D001378 ORTHO05D001249 5.3e-10 70.1 41 82.9
Lj2g0001582 Lotus japonicus HOM05D001041 ORTHO05D000846 6.9e-10 69.7 70 60.0
Rhsim08G0037900 Rhododendron simsii HOM05D001378 ORTHO05D001249 6.9e-10 69.7 42 78.6
Ah.03g136550 Amaranthus hybridus HOM05D001378 ORTHO05D001249 9.0e-10 69.3 48 72.9
Lj1g0005385 Lotus japonicus HOM05D001378 ORTHO05D001249 9.0e-10 69.3 70 60.0
Lj4g0009555 Lotus japonicus HOM05D001378 ORTHO05D001249 9.0e-10 69.3 70 60.0
Phvul.001G099300 Phaseolus vulgaris HOM05D001378 ORTHO05D001249 9.0e-10 69.3 54 72.2
Sc07g0003950 Simmondsia chinensis HOM05D001378 ORTHO05D001249 9.0e-10 69.3 75 54.7
RcHm_v2.0_Chr2g0176691 Rosa chinensis HOM05D001378 ORTHO05D001249 2.6e-09 67.8 46 73.9
FvH4_6g54440 Fragaria vesca HOM05D001378 ORTHO05D001249 5.9e-09 66.6 76 55.3
FAN09G4268 Fragaria x ananassa HOM05D001378 ORTHO05D001249 5.9e-09 66.6 76 55.3
FAN14G2940 Fragaria x ananassa HOM05D001378 ORTHO05D001249 5.9e-09 66.6 76 55.3
FAN14G3014 Fragaria x ananassa HOM05D001378 ORTHO05D001249 5.9e-09 66.6 76 55.3
Hund19913 Selenicereus undatus HOM05D001378 ORTHO05D001249 5.9e-09 66.6 41 80.5
vmacro18399 Vaccinium macrocarpon HOM05D001378 ORTHO05D001249 5.9e-09 66.6 76 51.3
AUR62042866 Chenopodium quinoa HOM05D001378 ORTHO05D001249 1.0e-08 65.9 46 71.7
FAN14G2447 Fragaria x ananassa HOM05D001378 ORTHO05D001249 1.0e-08 65.9 64 60.9
Lalb_Chr24g0402911 Lupinus albus HOM05D001378 ORTHO05D001249 1.0e-08 65.9 69 55.1
AUR62017471 Chenopodium quinoa HOM05D001378 ORTHO05D001249 1.3e-08 65.5 46 71.7
PSO478G1634 Papaver somniferum HOM05D001378 ORTHO05D001249 3.8e-08 63.9 68 51.5
MBI11_g03704_MAGBIO Magnolia biondii HOM05D001378 ORTHO05D001249 5.0e-08 63.5 64 53.1
A02p30470 Brassica napus HOM05D001378 ORTHO05D001249 8.5e-08 62.8 74 47.3
BraA02t08060Z Brassica rapa HOM05D001378 ORTHO05D001249 8.5e-08 62.8 53 58.5
PSO017G3330 Papaver somniferum HOM05D001378 ORTHO05D001249 8.5e-08 62.8 68 51.5
BcaC06g31438 Brassica carinata HOM05D001378 ORTHO05D001249 1.1e-07 62.4 53 58.5
Medtr0440s0020 Medicago truncatula HOM05D000163 ORTHO05D018756 1.1e-07 62.4 42 81.0
Aa31sc182G30 Aethionema arabicum HOM05D001378 ORTHO05D001249 1.4e-07 62.0 56 60.7
AL8G11440 Arabidopsis lyrata HOM05D001378 ORTHO05D001249 1.4e-07 62.0 55 60.0
AT5G46860 Arabidopsis thaliana HOM05D001378 ORTHO05D001249 1.4e-07 62.0 55 60.0
Carub.0008s0105 Capsella rubella HOM05D001378 ORTHO05D001249 1.9e-07 61.6 53 58.5
BcaC03g16900 Brassica carinata HOM05D001378 ORTHO05D001249 2.5e-07 61.2 74 47.3
C02p48010 Brassica napus HOM05D001378 ORTHO05D001249 2.5e-07 61.2 74 47.3
BolC2t10833H Brassica oleracea HOM05D001378 ORTHO05D001249 2.5e-07 61.2 74 47.3
BcaC06g34336 Brassica carinata HOM05D001378 ORTHO05D001249 3.2e-07 60.8 53 56.6
A06p45560 Brassica napus HOM05D001378 ORTHO05D001249 3.2e-07 60.8 53 56.6
C07p30220 Brassica napus HOM05D001378 ORTHO05D001249 3.2e-07 60.8 53 56.6
BolC7t43558H Brassica oleracea HOM05D001378 ORTHO05D001249 3.2e-07 60.8 53 56.6
BraA06t27428Z Brassica rapa HOM05D001378 ORTHO05D001249 3.2e-07 60.8 53 56.6
CDE05G0423 Ceratophyllum demersum HOM05D001378 ORTHO05D001249 4.2e-07 60.5 39 69.2
CARHR174590 Cardamine hirsuta HOM05D001378 ORTHO05D001249 7.2e-07 59.7 74 45.9
CDE05G0699 Ceratophyllum demersum HOM05D001378 ORTHO05D001249 7.2e-07 59.7 39 69.2
arahy.Tifrunner.gnm1.ann1.6HWF75 Arachis hypogaea HOM05D001378 ORTHO05D001249 9.4e-07 59.3 51 58.8
arahy.Tifrunner.gnm1.ann1.7X6P0W Arachis hypogaea HOM05D001378 ORTHO05D001249 9.4e-07 59.3 51 58.8
Sp2g11660 Schrenkiella parvula HOM05D001378 ORTHO05D001249 9.4e-07 59.3 53 56.6
QL09p023276 Quercus lobata HOM05D001378 ORTHO05D001249 1.6e-06 58.5 41 61.0
PGSC0003DMG400026526 Solanum tuberosum HOM05D001378 ORTHO05D001249 2.1e-06 58.2 46 58.7
Eucgr.A02975 Eucalyptus grandis HOM05D001378 ORTHO05D001249 2.7e-06 57.8 49 59.2
Thhalv10000996m.g Eutrema salsugineum HOM05D001378 ORTHO05D001249 2.7e-06 57.8 53 54.7
Gorai.004G183100 Gossypium raimondii HOM05D001378 ORTHO05D001249 2.7e-06 57.8 61 54.1
TPR.G8084 Trifolium pratense HOM05D001378 ORTHO05D001249 2.7e-06 57.8 78 44.9
CsaV3_3G001490 Cucumis sativus L. HOM05D001378 ORTHO05D001249 3.6e-06 57.4 44 61.4
MD16G1270600 Malus domestica HOM05D001378 ORTHO05D001249 3.6e-06 57.4 39 66.7
arahy.Tifrunner.gnm1.ann1.50YMIU Arachis hypogaea HOM05D001378 ORTHO05D001249 4.6e-06 57.0 49 59.2
arahy.Tifrunner.gnm1.ann1.BB0AZK Arachis hypogaea HOM05D001378 ORTHO05D001249 4.6e-06 57.0 49 59.2
AUR62017470 Chenopodium quinoa HOM05D001378 ORTHO05D001249 4.6e-06 57.0 49 59.2
Eucgr.E00245 Eucalyptus grandis HOM05D001378 ORTHO05D001249 4.6e-06 57.0 75 44.0
THA.LOC104798335 Tarenaya hassleriana HOM05D001378 ORTHO05D001249 4.6e-06 57.0 49 59.2
CiPaw.06G034000 Carya illinoinensis HOM05D001378 ORTHO05D001249 6.1e-06 56.6 41 61.0
THA.LOC104798485 Tarenaya hassleriana HOM05D001378 ORTHO05D001249 6.1e-06 56.6 65 53.8
Aa31LG6G480 Aethionema arabicum HOM05D001378 ORTHO05D001249 7.9e-06 56.2 39 64.1
CANSAT64G2059 Cannabis sativa HOM05D001378 ORTHO05D001249 7.9e-06 56.2 52 59.6
Cpa.g.c45467 Carica papaya HOM05D001378 ORTHO05D001249 7.9e-06 56.2 49 59.2
CDE04G3288 Ceratophyllum demersum HOM05D001378 ORTHO05D001249 7.9e-06 56.2 39 61.5
COL.COLO4_16966 Corchorus olitorius HOM05D001378 ORTHO05D001249 7.9e-06 56.2 80 45.0
MELO3C013834.2 Cucumis melo HOM05D001378 ORTHO05D001249 7.9e-06 56.2 55 54.5
Lj4g0002993 Lotus japonicus HOM05D001378 ORTHO05D001249 7.9e-06 56.2 83 44.6
Psat2g101680 Pisum sativum HOM05D001378 ORTHO05D001249 7.9e-06 56.2 76 36.8
PGR031G2235 Punica granatum HOM05D001378 ORTHO05D001249 7.9e-06 56.2 76 44.7
PGR042G2654 Punica granatum HOM05D001378 ORTHO05D001249 7.9e-06 56.2 39 61.5
Solyc11g066910.3 Solanum lycopersicum HOM05D001378 ORTHO05D001249 7.9e-06 56.2 51 58.8
Sopen11g026630 Solanum pennellii HOM05D001378 ORTHO05D001249 7.9e-06 56.2 51 58.8


User provided reference genes

Program Settings