Gene: AT5G46860

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT5G46860
  • Transcript Identifier AT5G46860.1
  • Gene Type Coding gene
  • Location Chr5 : 19012342-19013795 : negative

Gene Family Information

  • ID HOM05D001378
  • #Genes/#Species 454/100
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT5G46860.1
  • symbol VAM3
  • Alias ATSYP22,ARABIDOPSIS THALIANA SYNTAXIN OF PLANTS 22,ATVAM3,ARABIDOPSIS THALIANA VACUOLAR MORPHOLOGY 3,SGR3,SHOOT GRAVITROPISM 3,SYP22,SYNTAXIN OF PLANTS 22
  • full_name VACUOLAR MORPHOLOGY 3
  • uniprot P93654

Descriptions

  • Description Syntaxin/t-SNARE family protein
  • Computational description VACUOLAR MORPHOLOGY 3 (VAM3); FUNCTIONS IN: SNAP receptor activity; INVOLVED IN: in 7 processes; LOCATED IN: late endosome, trans-Golgi network transport vesicle, plant-type vacuole membrane, vacuole, plant-type vacuole; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Target SNARE coiled-coil domain (InterPro:IPR000727), t-SNARE (InterPro:IPR010989), Syntaxin/epimorphin, conserved site (InterPro:IPR006012), Syntaxin, N-terminal (InterPro:IPR006011); BEST Arabidopsis thaliana protein match is: syntaxin of plants 23 (TAIR:AT4G17730.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0048278
IBA
Gene Ontologyvesicle docking1
GO:0006906
IBA
Gene Ontologyvesicle fusion1
GO:0015031
IEA
GOA Databaseprotein transport
GO:0006886
IEA
GOA Databaseintracellular protein transport
GO:0006886
IBA
TAS
Gene Ontologyintracellular protein transport1 2
GO:0016192
IEA
GOA Databasevesicle-mediated transport
GO:0016192
IEA
InterProvesicle-mediated transport
GO:0010118
IMP
Gene Ontologystomatal movement3
GO:0061025
TAS
Gene Ontologymembrane fusion2
GO:0009660
IMP
Gene Ontologyamyloplast organization4
GO:0045324
IGI
Gene Ontologylate endosome to vacuole transport5
GO:0009959
IMP
Gene Ontologynegative gravitropism6
GO:0007033
IGI
Gene Ontologyvacuole organization7

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0000149
IBA
Gene OntologySNARE binding1
GO:0005484
IEA
GOA DatabaseSNAP receptor activity
GO:0005484
IBA
TAS
Gene OntologySNAP receptor activity1 2
GO:0005515
IPI
Gene Ontologyprotein binding4

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0016021
IEA
GOA Databaseintegral component of membrane
GO:0016021
IBA
Gene Ontologyintegral component of membrane1
GO:0012505
IBA
Gene Ontologyendomembrane system1
GO:0005774
IEA
GOA Databasevacuolar membrane
GO:0005773
IDA
IEA
GOA Databasevacuole
GO:0005773
HDA
Gene Ontologyvacuole8
GO:0031201
IBA
Gene OntologySNARE complex1
GO:0016020
IEA
GOA Databasemembrane
GO:0016020
IEA
InterPromembrane
GO:0005770
TAS
Gene Ontologylate endosome2
GO:0030140
TAS
Gene Ontologytrans-Golgi network transport vesicle2
GO:0000325
IDA, HDA
Gene Ontologyplant-type vacuole9 10
GO:0009705
IDA
Gene Ontologyplant-type vacuole membrane11

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR006011 Syntaxin, N-terminal domain
IPR000727 Target SNARE coiled-coil homology domain
IPR010989 SNARE
Mapman id Description
22.3.5.1.1.2 Vesicle trafficking.post-Golgi trafficking.target membrane fusion.membrane fusion complexes.Qa-type SNARE components.SYP2-group component