Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa020755 Carpinus fangiana HOM05D005445 ORTHO05D007043 2.0e-172 609.0 306 100.0
CiPaw.15G161100 Carya illinoinensis HOM05D005445 ORTHO05D007043 7.0e-149 530.8 308 86.7
CiPaw.16G104300 Carya illinoinensis HOM05D005445 ORTHO05D007043 4.0e-144 515.0 306 85.3
QL11p008649 Quercus lobata HOM05D005445 ORTHO05D007043 7.7e-140 500.7 348 76.1
Prupe.1G063800 Prunus persica HOM05D005445 ORTHO05D007043 3.6e-137 491.9 306 81.4
Thecc.09G196900 Theobroma cacao HOM05D005445 ORTHO05D007043 1.8e-136 489.6 306 81.0
CANSAT80G1260 Cannabis sativa HOM05D005445 ORTHO05D007043 3.4e-135 485.3 308 80.5
MD16G1238000 Malus domestica HOM05D005445 ORTHO05D007043 4.4e-135 485.0 306 79.7
Atru.chr7.1013 Acer truncatum HOM05D005445 ORTHO05D007043 5.7e-135 484.6 306 80.7
Ciclev10008923m.g Citrus clementina HOM05D005445 ORTHO05D007043 4.1e-133 478.4 306 79.7
GSVIVG01032266001 Vitis vinifera HOM05D005445 ORTHO05D007043 7.0e-133 477.6 309 78.6
Glyma.08G027200 Glycine max HOM05D005445 ORTHO05D007043 2.7e-132 475.7 307 79.2
Cpa.g.sc115.19 Carica papaya HOM05D005445 ORTHO05D007043 1.9e-130 469.5 306 78.1
Hma1.2p1_0314F.1_g122070 Hydrangea macrophylla HOM05D005445 ORTHO05D007043 4.2e-130 468.4 307 77.9
Dinv12613 Davidia involucrata HOM05D005445 ORTHO05D007043 7.2e-130 467.6 308 77.3
Gohir.A08G017100 Gossypium hirsutum HOM05D005445 ORTHO05D007043 2.8e-129 465.7 306 78.4
Manes.02G221800 Manihot esculenta HOM05D005445 ORTHO05D007043 4.7e-129 464.9 308 77.6
Actinidia07565 Actinidia chinensis HOM05D005445 ORTHO05D007043 1.4e-128 463.4 307 77.2
Gohir.D08G027500 Gossypium hirsutum HOM05D005445 ORTHO05D007043 3.0e-128 462.2 306 78.4
VMungo0251G0086 Vigna mungo HOM05D005445 ORTHO05D007043 4.0e-128 461.8 307 77.5
TWI63G1185 Tripterygium wilfordii HOM05D005445 ORTHO05D007043 8.9e-128 460.7 306 78.8
Glyma.05G220700 Glycine max HOM05D005445 ORTHO05D007043 1.5e-127 459.9 307 77.9
Gorai.004G024500 Gossypium raimondii HOM05D005445 ORTHO05D007043 5.7e-127 458.0 311 77.2
CSS0000968 Camellia sinensis var. sinensis HOM05D005445 ORTHO05D007043 2.2e-126 456.1 308 76.0
arahy.Tifrunner.gnm1.ann1.HNJF4G Arachis hypogaea HOM05D005445 ORTHO05D007043 2.8e-126 455.7 306 77.5
RcHm_v2.0_Chr4g0397601 Rosa chinensis HOM05D005445 ORTHO05D007043 1.1e-125 453.8 309 77.0
Nitab4.5_0000899g0030 Nicotiana tabacum HOM05D005445 ORTHO05D007043 3.1e-125 452.2 307 73.3
Lalb_Chr09g0332001 Lupinus albus HOM05D005445 ORTHO05D007043 5.4e-125 451.4 307 75.9
TAR383G0382 Trochodendron aralioides HOM05D005445 ORTHO05D007043 5.4e-125 451.4 313 75.1
TAR383G1024 Trochodendron aralioides HOM05D005445 ORTHO05D007043 5.4e-125 451.4 313 75.1
Nitab4.5_0004036g0030 Nicotiana tabacum HOM05D005445 ORTHO05D007043 7.0e-125 451.1 307 73.6
Ca_17431_v3 Cicer arietinum L. HOM05D005445 ORTHO05D007043 1.2e-124 450.3 307 77.2
Ca_17440_v3 Cicer arietinum L. HOM05D005445 ORTHO05D007043 1.2e-124 450.3 307 77.2
FvH4_4g06040 Fragaria vesca HOM05D005445 ORTHO05D007043 1.6e-124 449.9 308 76.3
Nn8g41135 Nelumbo nucifera HOM05D005445 ORTHO05D007043 1.6e-124 449.9 312 74.7
Lj4g0004845 Lotus japonicus HOM05D005445 ORTHO05D007043 2.7e-124 449.1 305 76.4
Medtr8g101230 Medicago truncatula HOM05D005445 ORTHO05D007043 4.5e-124 448.4 307 77.5
Phvul.002G302400 Phaseolus vulgaris HOM05D005445 ORTHO05D007043 4.5e-124 448.4 307 77.2
Solyc07g017400.3 Solanum lycopersicum HOM05D005445 ORTHO05D007043 3.8e-123 445.3 307 72.3
Sopen07g006100 Solanum pennellii HOM05D005445 ORTHO05D007043 5.0e-123 444.9 307 72.3
Duzib168G0912 Durio zibethinus HOM05D005445 ORTHO05D007043 1.1e-122 443.7 319 73.4
FAN17G2613 Fragaria x ananassa HOM05D005445 ORTHO05D007043 1.5e-122 443.4 308 75.3
TPR.G25470 Trifolium pratense HOM05D005445 ORTHO05D007043 4.3e-122 441.8 307 75.6
arahy.Tifrunner.gnm1.ann1.K4ERET Arachis hypogaea HOM05D005445 ORTHO05D007043 5.6e-122 441.4 326 72.7
Rhsim04G0099700 Rhododendron simsii HOM05D005445 ORTHO05D007043 2.1e-121 439.5 306 72.2
Psat7g020920 Pisum sativum HOM05D005445 ORTHO05D007043 2.8e-121 439.1 307 75.6
Eucgr.C00062 Eucalyptus grandis HOM05D005445 ORTHO05D007043 1.0e-120 437.2 308 73.1
MBI13_g31572_MAGBIO Magnolia biondii HOM05D005445 ORTHO05D007043 1.8e-120 436.4 314 73.6
Aqoxy7G02630 Aquilegia oxysepala HOM05D005445 ORTHO05D007043 4.4e-119 431.8 313 73.5
MELO3C003927.2 Cucumis melo HOM05D005445 ORTHO05D007043 1.4e-117 426.8 304 73.0
CsaV3_2G009110 Cucumis sativus L. HOM05D005445 ORTHO05D007043 2.4e-117 426.0 305 73.8
CAN.G146.2 Capsicum annuum HOM05D005445 ORTHO05D007043 3.2e-117 425.6 307 69.4
ClCG11G011350 Citrullus lanatus HOM05D005445 ORTHO05D007043 1.6e-116 423.3 305 73.4
Sabra06G0059700 Salix brachista HOM05D005445 ORTHO05D007043 4.6e-116 421.8 308 72.7
FAN07G1413 Fragaria x ananassa HOM05D005445 ORTHO05D007043 2.3e-115 419.5 308 73.1
Oeu028820.1 Olea europaea HOM05D005445 ORTHO05D007043 1.1e-114 417.2 300 72.0
DCAR_020460 Daucus carota HOM05D005445 ORTHO05D007043 1.9e-114 416.4 307 71.3
PGR142G0598 Punica granatum HOM05D005445 ORTHO05D007043 1.9e-114 416.4 309 72.5
CDE06G0990 Ceratophyllum demersum HOM05D005445 ORTHO05D007043 4.3e-114 415.2 310 68.7
Cc00_g00070 Coffea canephora HOM05D005445 ORTHO05D007043 2.3e-112 409.5 308 69.5
HPP92_028347 Vanilla planifolia HOM05D005445 ORTHO05D007043 4.0e-112 408.7 311 67.5
Duzib170G0675 Durio zibethinus HOM05D005445 ORTHO05D007043 5.2e-112 408.3 304 69.7
MSTRG.26517 Avicennia marina HOM05D005445 ORTHO05D007043 8.9e-112 407.5 309 67.6
SGA_v2.0_scaffold485G52365 Striga asiatica HOM05D005445 ORTHO05D007043 1.5e-111 406.8 308 68.8
Sed0003073 Sechium edule HOM05D005445 ORTHO05D007043 2.2e-110 402.9 289 72.7
Hund03231 Selenicereus undatus HOM05D005445 ORTHO05D007043 2.9e-110 402.5 311 67.2
ECA234G2663 Erigeron canadensis HOM05D005445 ORTHO05D007043 1.1e-109 400.6 305 66.9
THA.LOC104815270 Tarenaya hassleriana HOM05D005445 ORTHO05D007043 1.6e-108 396.7 289 70.6
SalBow5G4362 Salvia bowleyana HOM05D005445 ORTHO05D007043 2.7e-108 396.0 323 65.6
Potri.006G078800 Populus trichocarpa HOM05D005445 ORTHO05D007043 3.5e-108 395.6 305 69.2
ATR0626G233 Amborella trichopoda HOM05D005445 ORTHO05D007043 1.1e-106 390.6 313 65.2
Sp4g09300 Schrenkiella parvula HOM05D005445 ORTHO05D007043 2.1e-105 386.3 289 69.9
HanXRQChr10g0309531 Helianthus annuus HOM05D005445 ORTHO05D007043 2.8e-105 386.0 300 66.7
Thhalv10000977m.g Eutrema salsugineum HOM05D005445 ORTHO05D007043 8.1e-105 384.4 280 72.5
AT2G26590 Arabidopsis thaliana HOM05D005445 ORTHO05D007043 6.8e-104 381.3 281 71.5
Migut.L01918 Erythranthe guttata HOM05D005445 ORTHO05D007043 5.8e-103 378.3 300 64.3
Os05g0594800 Oryza sativa ssp. japonica HOM05D005445 ORTHO05D007043 9.9e-103 377.5 307 66.1
AL4G19530 Arabidopsis lyrata HOM05D005445 ORTHO05D007043 1.7e-102 376.7 281 70.5
CARHR118490 Cardamine hirsuta HOM05D005445 ORTHO05D007043 3.7e-102 375.6 282 69.5
BcaB01g03027 Brassica carinata HOM05D005445 ORTHO05D007043 4.9e-102 375.2 307 65.5
Thhalv10016855m.g Eutrema salsugineum HOM05D005445 ORTHO05D007043 1.1e-101 374.0 284 68.7
BraA03t11899Z Brassica rapa HOM05D005445 ORTHO05D007043 1.9e-101 373.2 310 64.8
Zm00001eb297230 Zea mays HOM05D005445 ORTHO05D007043 2.4e-101 372.9 315 63.8
Carub.0004s0844 Capsella rubella HOM05D005445 ORTHO05D007043 1.2e-100 370.5 283 69.3
C03p32210 Brassica napus HOM05D005445 ORTHO05D007043 1.6e-100 370.2 307 64.5
PSO170G6081 Papaver somniferum HOM05D005445 ORTHO05D007043 2.1e-100 369.8 317 64.4
PSO063G4940 Papaver somniferum HOM05D005445 ORTHO05D007043 2.7e-100 369.4 317 63.7
BcaC01g04909 Brassica carinata HOM05D005445 ORTHO05D007043 3.5e-100 369.0 307 64.5
BolC3t15563H Brassica oleracea HOM05D005445 ORTHO05D007043 7.8e-100 367.9 284 68.0
Lsat_1_v5_gn_5_80620 Lactuca sativa HOM05D005445 ORTHO05D007043 3.9e-99 365.5 291 65.6
Aa31LG5G9140 Aethionema arabicum HOM05D005445 ORTHO05D007043 5.6e-98 361.7 285 66.3
A03p26880 Brassica napus HOM05D005445 ORTHO05D007043 8.1e-97 357.8 310 63.2
Peaxi162Scf01184g00140 Petunia axillaris HOM05D005445 ORTHO05D007043 3.1e-96 355.9 337 57.3
Ah.10g032730 Amaranthus hybridus HOM05D005445 ORTHO05D007043 8.9e-96 354.4 311 62.4
EL10Ac2g03624 Beta vulgaris HOM05D005445 ORTHO05D007043 1.3e-91 340.5 341 56.9
Lj5C772G2 Lonicera japonica HOM05D005445 ORTHO05D007043 1.7e-91 340.1 260 67.3
Lalb_Chr05g0223811 Lupinus albus HOM05D005445 ORTHO05D007043 8.7e-91 337.8 245 72.7
AUR62027984 Chenopodium quinoa HOM05D005445 ORTHO05D007043 1.1e-90 337.4 308 61.0
unitig_85.g27245 Utricularia gibba HOM05D005445 ORTHO05D007043 5.6e-90 335.1 301 59.8
SEGI_14233 Sequoiadendron giganteum HOM05D005445 ORTHO05D007043 9.6e-90 334.3 330 56.7
AUR62020729 Chenopodium quinoa HOM05D005445 ORTHO05D007043 1.6e-89 333.6 280 63.2
Dinv26479 Davidia involucrata HOM05D005445 ORTHO05D007043 1.1e-88 330.9 223 78.0
vmacro20760 Vaccinium macrocarpon HOM05D005445 ORTHO05D007043 1.3e-86 323.9 217 74.2
Hma1.2p1_0314F.1_g122080 Hydrangea macrophylla HOM05D005445 ORTHO05D007043 1.7e-83 313.5 219 75.8
Dinv00323 Davidia involucrata HOM05D005445 ORTHO05D007043 4.2e-77 292.4 198 78.8
Pp3c21_370 Physcomitrium patens HOM05D005445 ORTHO05D007043 1.6e-73 280.4 291 50.5
Sc14g0007060 Simmondsia chinensis HOM05D005445 ORTHO05D007043 6.4e-70 268.5 226 65.9
SMO116G0379 Selaginella moellendorffii HOM05D005445 ORTHO05D007043 7.4e-66 255.0 296 48.0
CDE02G2220 Ceratophyllum demersum HOM05D005445 ORTHO05D007043 1.8e-64 250.4 226 62.4
Haze_19097 Corylus avellana HOM05D005445 ORTHO05D007043 4.0e-64 249.2 186 72.0
Mapoly0011s0124 Marchantia polymorpha HOM05D005445 ORTHO05D007043 1.0e-59 234.6 322 47.2
COL.COLO4_23410 Corchorus olitorius HOM05D005445 ORTHO05D007043 3.0e-59 233.0 137 79.6
CBR_g28055 Chara braunii HOM05D005445 ORTHO05D007043 3.1e-56 223.0 340 42.1
Sc14g0006300 Simmondsia chinensis HOM05D005445 ORTHO05D007043 1.4e-40 171.0 124 70.2
vmacro10242 Vaccinium macrocarpon HOM05D002150 ORTHO05D002191 1.5e-34 151.0 91 76.9
vmacro07726 Vaccinium macrocarpon HOM05D005445 ORTHO05D007043 5.7e-34 149.1 90 76.7
MD13G1232400 Malus domestica HOM05D005445 ORTHO05D007043 7.0e-32 142.1 173 54.3
C03p32230 Brassica napus HOM05D005445 ORTHO05D007043 1.6e-28 131.0 80 80.0
BolC3t15564H Brassica oleracea HOM05D005445 ORTHO05D007043 1.6e-28 131.0 80 80.0
HPP92_015797 Vanilla planifolia HOM05D005445 ORTHO05D007043 2.6e-26 123.6 281 33.5
MCO02G027 Micromonas commoda HOM05D005445 ORTHO05D007043 2.8e-25 120.2 337 28.8
HanXRQChr09g0242991 Helianthus annuus HOM05D005445 ORTHO05D007043 1.2e-20 104.8 86 65.1
Cre11.g469450 Chlamydomonas reinhardtii HOM05D005445 ORTHO05D007043 4.7e-20 102.8 345 27.0
HanXRQChr09g0248391 Helianthus annuus HOM05D005445 ORTHO05D007043 4.1e-16 89.7 82 64.6
HanXRQChr09g0242981 Helianthus annuus HOM05D005445 ORTHO05D007043 9.1e-16 88.6 82 63.4
HanXRQChr13g0395691 Helianthus annuus HOM05D005445 ORTHO05D007043 9.1e-16 88.6 82 63.4
Lalb_Chr05g0223801 Lupinus albus HOM05D005445 ORTHO05D007043 1.2e-15 88.2 53 77.4
SHI03135 Sapria himalayana HOM05D005445 ORTHO05D007043 1.2e-15 88.2 49 85.7
HanXRQChr09g0246171 Helianthus annuus HOM05D005445 ORTHO05D007043 4.5e-15 86.3 79 64.6
SGA_v2.0_scaffold21G09605 Striga asiatica HOM05D005445 ORTHO05D007043 6.6e-14 82.4 93 48.4
vmacro04822 Vaccinium macrocarpon HOM05D005445 ORTHO05D007043 9.5e-13 78.6 44 79.5
TPR.G25462 Trifolium pratense HOM05D000254 ORTHO05D000165 3.5e-07 60.1 95 40.0
Cfa010023 Carpinus fangiana HOM05D005445 ORTHO05D121632 7.8e-07 58.9 38 81.6
Sopen09g008640 Solanum pennellii HOM05D011435 ORTHO05D012656 1.0e-06 58.5 58 55.2
Potri.003G027722 Populus trichocarpa HOM05D005445 ORTHO05D007043 2.9e-06 57.0 49 55.1


User provided reference genes

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