Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa020676 Carpinus fangiana HOM05D003999 ORTHO05D005219 3.0e-265 917.9 453 100.0
Haze_18974 Corylus avellana HOM05D003999 ORTHO05D005219 2.5e-235 818.5 475 87.2
Haze_18980 Corylus avellana HOM05D003999 ORTHO05D005219 6.3e-231 803.9 495 83.2
CiPaw.15G150400 Carya illinoinensis HOM05D003999 ORTHO05D005219 7.4e-123 444.9 434 53.5
Thecc.09G004800 Theobroma cacao HOM05D003999 ORTHO05D005219 2.3e-84 317.0 442 41.6
Ciclev10008331m.g Citrus clementina HOM05D003999 ORTHO05D005219 5.2e-84 315.8 468 40.8
Nn8g40781 Nelumbo nucifera HOM05D003999 ORTHO05D005219 1.5e-78 297.7 332 48.2
Atru.chr7.2670 Acer truncatum HOM05D003999 ORTHO05D005219 7.8e-72 275.4 435 38.9
TAR625G1146 Trochodendron aralioides HOM05D003999 ORTHO05D005219 7.8e-72 275.4 503 36.4
Potri.006G277400 Populus trichocarpa HOM05D003999 ORTHO05D005219 1.9e-70 270.8 461 36.7
Manes.06G019800 Manihot esculenta HOM05D003999 ORTHO05D005219 4.2e-65 253.1 436 37.2
TAR383G0399 Trochodendron aralioides HOM05D003999 ORTHO05D005219 7.1e-65 252.3 520 35.6
TAR626G1281 Trochodendron aralioides HOM05D003999 ORTHO05D005219 1.6e-64 251.1 518 36.3
Aqoxy7G02806 Aquilegia oxysepala HOM05D003999 ORTHO05D005219 2.7e-64 250.4 276 48.6
Actinidia29951 Actinidia chinensis HOM05D003999 ORTHO05D005219 4.6e-64 249.6 448 37.7
Atru.chr7.755 Acer truncatum HOM05D003999 ORTHO05D005219 1.0e-63 248.4 513 34.3
Atru.chr7.776 Acer truncatum HOM05D003999 ORTHO05D005219 1.0e-63 248.4 513 34.3
Dinv41175 Davidia involucrata HOM05D003999 ORTHO05D005219 1.3e-63 248.1 503 36.0
Cfa013453 Carpinus fangiana HOM05D003999 ORTHO05D005219 1.7e-63 247.7 449 37.2
Rhsim03G0266100 Rhododendron simsii HOM05D003999 ORTHO05D005219 1.5e-62 244.6 450 37.8
Prupe.1G075400 Prunus persica HOM05D003999 ORTHO05D005219 5.6e-62 242.7 437 36.8
Sabra06G0215100 Salix brachista HOM05D003999 ORTHO05D005219 2.1e-61 240.7 506 32.4
Actinidia38494 Actinidia chinensis HOM05D003999 ORTHO05D005219 4.7e-61 239.6 498 35.5
vmacro05997 Vaccinium macrocarpon HOM05D003999 ORTHO05D005219 1.1e-60 238.4 452 36.3
RcHm_v2.0_Chr7g0219501 Rosa chinensis HOM05D003999 ORTHO05D005219 3.4e-59 233.4 437 35.0
MSTRG.26544 Avicennia marina HOM05D003999 ORTHO05D005219 7.6e-59 232.3 452 35.2
PSO170G0656 Papaver somniferum HOM05D003999 ORTHO05D005219 9.9e-59 231.9 266 47.7
CiPaw.07G197100 Carya illinoinensis HOM05D003999 ORTHO05D005219 4.9e-58 229.6 455 34.5
TWI63G1413 Tripterygium wilfordii HOM05D003999 ORTHO05D005219 4.9e-58 229.6 453 35.5
FAN13G0316 Fragaria x ananassa HOM05D003999 ORTHO05D005219 6.4e-58 229.2 461 34.5
AUR62027455 Chenopodium quinoa HOM05D003999 ORTHO05D005219 1.1e-57 228.4 477 32.9
Ciclev10010423m.g Citrus clementina HOM05D003999 ORTHO05D005219 7.1e-57 225.7 493 34.5
Cc06_g20850 Coffea canephora HOM05D003999 ORTHO05D005219 1.2e-56 224.9 448 36.2
Gohir.A06G176100 Gossypium hirsutum HOM05D003999 ORTHO05D005219 1.2e-56 224.9 348 37.9
Hma1.2p1_1326F.1_g275830 Hydrangea macrophylla HOM05D003999 ORTHO05D005219 1.2e-56 224.9 437 35.9
Potri.006G075400 Populus trichocarpa HOM05D003999 ORTHO05D005219 1.2e-56 224.9 475 33.1
Peaxi162Scf00670g00347 Petunia axillaris HOM05D003999 ORTHO05D005219 2.1e-56 224.2 455 37.1
Lj1g0014223 Lotus japonicus HOM05D003999 ORTHO05D005219 2.7e-56 223.8 448 35.3
Potri.018G142300 Populus trichocarpa HOM05D003999 ORTHO05D005219 3.5e-56 223.4 446 33.4
MD13G1241700 Malus domestica HOM05D003999 ORTHO05D005219 6.0e-56 222.6 355 38.9
Sc08g0004740 Simmondsia chinensis HOM05D003999 ORTHO05D005219 6.0e-56 222.6 302 41.7
EL10Ac8g19270 Beta vulgaris HOM05D003999 ORTHO05D005219 1.0e-55 221.9 456 33.3
DCAR_014666 Daucus carota HOM05D003999 ORTHO05D005219 1.3e-55 221.5 402 36.8
AUR62031249 Chenopodium quinoa HOM05D003999 ORTHO05D005219 1.7e-55 221.1 477 32.9
FAN04G0885 Fragaria x ananassa HOM05D003999 ORTHO05D005219 3.9e-55 219.9 459 35.3
Ca_15280_v3 Cicer arietinum L. HOM05D003999 ORTHO05D005219 8.7e-55 218.8 454 34.6
TWI34G1954 Tripterygium wilfordii HOM05D003999 ORTHO05D005219 8.7e-55 218.8 469 34.1
Thecc.10G174600 Theobroma cacao HOM05D003999 ORTHO05D005219 1.1e-54 218.4 336 36.9
Phvul.009G117100 Phaseolus vulgaris HOM05D003999 ORTHO05D005219 1.9e-54 217.6 371 36.4
Duzib106G1697 Durio zibethinus HOM05D003999 ORTHO05D005219 3.3e-54 216.9 347 37.2
VMungo1309G0585 Vigna mungo HOM05D003999 ORTHO05D005219 4.3e-54 216.5 276 41.3
Hund06701 Selenicereus undatus HOM05D003999 ORTHO05D005219 5.6e-54 216.1 477 33.3
Sabra06G0056300 Salix brachista HOM05D003999 ORTHO05D005219 7.3e-54 215.7 449 33.6
Sopen02g019140 Solanum pennellii HOM05D003999 ORTHO05D005219 9.6e-54 215.3 267 45.7
Migut.L01882 Erythranthe guttata HOM05D003999 ORTHO05D005219 1.3e-53 214.9 275 43.6
FAN18G4269 Fragaria x ananassa HOM05D003999 ORTHO05D005219 1.3e-53 214.9 443 34.1
Glyma.04G001900 Glycine max HOM05D003999 ORTHO05D005219 1.6e-53 214.5 435 33.3
Duzib114G0910 Durio zibethinus HOM05D003999 ORTHO05D005219 2.1e-53 214.2 348 35.6
Eucgr.C02221 Eucalyptus grandis HOM05D003999 ORTHO05D005219 2.1e-53 214.2 443 33.2
Gohir.D06G185700 Gossypium hirsutum HOM05D003999 ORTHO05D005219 2.8e-53 213.8 348 36.8
Sabra18G0116200 Salix brachista HOM05D003999 ORTHO05D005219 4.8e-53 213.0 462 34.2
CAN.G79.26 Capsicum annuum HOM05D003999 ORTHO05D005219 8.1e-53 212.2 273 43.6
Gorai.010G217300 Gossypium raimondii HOM05D003999 ORTHO05D005219 8.1e-53 212.2 348 36.8
MBI13_g34042_MAGBIO Magnolia biondii HOM05D003999 ORTHO05D005219 8.1e-53 212.2 432 33.8
Psat5g048320 Pisum sativum HOM05D003999 ORTHO05D005219 2.4e-52 210.7 433 33.9
TPR.G6349 Trifolium pratense HOM05D003999 ORTHO05D005219 5.3e-52 209.5 293 41.0
ECA240G0372 Erigeron canadensis HOM05D003999 ORTHO05D005219 6.9e-52 209.1 263 42.6
Gohir.D10G188000 Gossypium hirsutum HOM05D003999 ORTHO05D005219 9.0e-52 208.8 346 37.0
COL.COLO4_08503 Corchorus olitorius HOM05D003999 ORTHO05D005219 1.5e-51 208.0 405 34.8
MBI16_g05835_MAGBIO Magnolia biondii HOM05D003999 ORTHO05D005219 1.5e-51 208.0 452 32.5
Sed0015737 Sechium edule HOM05D003999 ORTHO05D005219 2.6e-51 207.2 268 43.3
Glyma.06G001400 Glycine max HOM05D003999 ORTHO05D005219 9.9e-51 205.3 436 34.2
Gorai.011G210800 Gossypium raimondii HOM05D003999 ORTHO05D005219 9.9e-51 205.3 337 37.7
DCAR_020148 Daucus carota HOM05D003999 ORTHO05D005219 2.9e-50 203.8 465 34.4
Medtr3g100350 Medicago truncatula HOM05D003999 ORTHO05D005219 3.8e-50 203.4 281 42.0
Sed0001699 Sechium edule HOM05D003999 ORTHO05D005219 6.4e-50 202.6 434 33.6
HanXRQChr09g0244721 Helianthus annuus HOM05D003999 ORTHO05D005219 1.4e-49 201.4 310 38.1
Lalb_Chr11g0061221 Lupinus albus HOM05D003999 ORTHO05D005219 1.4e-49 201.4 291 39.9
ATR0626G364 Amborella trichopoda HOM05D003999 ORTHO05D005219 7.1e-49 199.1 264 41.3
Gohir.A10G181100 Gossypium hirsutum HOM05D003999 ORTHO05D005219 7.1e-49 199.1 345 35.9
arahy.Tifrunner.gnm1.ann1.M9AABA Arachis hypogaea HOM05D003999 ORTHO05D005219 2.7e-48 197.2 285 38.2
arahy.Tifrunner.gnm1.ann1.K74ZDU Arachis hypogaea HOM05D003999 ORTHO05D005219 4.6e-48 196.4 378 33.9
MELO3C017428.2 Cucumis melo HOM05D003999 ORTHO05D005219 1.8e-47 194.5 305 39.0
CsaV3_1G031880 Cucumis sativus L. HOM05D003999 ORTHO05D005219 2.3e-47 194.1 300 39.0
DCAR_018034 Daucus carota HOM05D003999 ORTHO05D005219 2.3e-47 194.1 303 39.3
FAN08G2100 Fragaria x ananassa HOM05D003999 ORTHO05D005219 1.5e-46 191.4 461 31.5
FvH4_5g27730 Fragaria vesca HOM05D003999 ORTHO05D005219 1.9e-46 191.0 461 31.5
MD16G1248600 Malus domestica HOM05D003999 ORTHO05D005219 1.9e-46 191.0 446 34.8
Nitab4.5_0001583g0100 Nicotiana tabacum HOM05D003999 ORTHO05D005219 2.5e-46 190.7 434 33.6
SGA_v2.0_scaffold231G43410 Striga asiatica HOM05D003999 ORTHO05D005219 4.3e-46 189.9 331 38.4
THA.LOC104814650 Tarenaya hassleriana HOM05D003999 ORTHO05D005219 4.3e-46 189.9 364 34.3
Os04g0425100 Oryza sativa ssp. japonica HOM05D003999 ORTHO05D005219 5.6e-46 189.5 315 36.8
Nitab4.5_0001225g0140 Nicotiana tabacum HOM05D003999 ORTHO05D005219 7.4e-46 189.1 439 33.7
Solyc02g069980.4 Solanum lycopersicum HOM05D003999 ORTHO05D005219 9.6e-46 188.7 241 44.0
unitig_8.g4939 Utricularia gibba HOM05D003999 ORTHO05D005219 1.3e-45 188.3 275 40.0
CSS0024594 Camellia sinensis var. sinensis HOM05D003999 ORTHO05D005219 4.8e-45 186.4 395 34.4
CDE06G2299 Ceratophyllum demersum HOM05D003999 ORTHO05D005219 4.8e-45 186.4 231 42.0
Migut.J00798 Erythranthe guttata HOM05D003999 ORTHO05D005219 4.8e-45 186.4 263 36.9
ATR0681G357 Amborella trichopoda HOM05D003999 ORTHO05D005219 6.2e-45 186.0 371 33.4
CDE02G3353 Ceratophyllum demersum HOM05D003999 ORTHO05D005219 1.4e-44 184.9 234 40.6
unitig_578.g16064 Utricularia gibba HOM05D003999 ORTHO05D005219 1.4e-44 184.9 272 39.7
Zm00001eb002000 Zea mays HOM05D003999 ORTHO05D005219 1.8e-44 184.5 388 32.2
Lsat_1_v5_gn_7_51121 Lactuca sativa HOM05D003999 ORTHO05D005219 2.6e-43 180.6 227 43.6
CiPaw.08G032500 Carya illinoinensis HOM05D003999 ORTHO05D005219 3.4e-43 180.3 305 38.7
Haze_22020 Corylus avellana HOM05D003999 ORTHO05D005219 1.3e-42 178.3 393 33.1
Zm00001eb274650 Zea mays HOM05D003999 ORTHO05D005219 1.7e-42 177.9 411 31.6
C09p14530 Brassica napus HOM05D003999 ORTHO05D005219 1.1e-38 165.2 224 40.2
Sp3g32620 Schrenkiella parvula HOM05D003999 ORTHO05D005219 3.3e-38 163.7 317 35.0
A07p01530 Brassica napus HOM05D003999 ORTHO05D005219 5.6e-38 162.9 230 38.7
BraA07t27954Z Brassica rapa HOM05D003999 ORTHO05D005219 5.6e-38 162.9 230 38.7
BcaC06g36543 Brassica carinata HOM05D003999 ORTHO05D005219 9.6e-38 162.2 245 38.8
C07p03110 Brassica napus HOM05D003999 ORTHO05D005219 9.6e-38 162.2 245 38.8
BolC7t40703H Brassica oleracea HOM05D003999 ORTHO05D005219 9.6e-38 162.2 245 38.8
Thhalv10022602m.g Eutrema salsugineum HOM05D003999 ORTHO05D005219 2.1e-37 161.0 324 34.3
BolC9t54356H Brassica oleracea HOM05D003999 ORTHO05D005219 3.7e-37 160.2 238 39.1
BcaC04g22860 Brassica carinata HOM05D003999 ORTHO05D005219 1.4e-36 158.3 236 39.4
Carub.0003s3349 Capsella rubella HOM05D003999 ORTHO05D005219 1.8e-36 157.9 254 38.6
AT2G19260 Arabidopsis thaliana HOM05D003999 ORTHO05D005219 2.4e-36 157.5 297 36.4
BcaB03g16715 Brassica carinata HOM05D003999 ORTHO05D005219 6.9e-36 156.0 245 36.3
Actinidia27131 Actinidia chinensis HOM05D003999 ORTHO05D005219 5.8e-35 152.9 337 33.5
AL3G49030 Arabidopsis lyrata HOM05D003999 ORTHO05D005219 5.8e-35 152.9 227 41.0
BcaB07g31614 Brassica carinata HOM05D003999 ORTHO05D005219 5.8e-35 152.9 236 39.8
Cc00_g03720 Coffea canephora HOM05D003999 ORTHO05D005219 2.9e-34 150.6 411 31.1
CSS0017119 Camellia sinensis var. sinensis HOM05D003999 ORTHO05D005219 8.4e-34 149.1 388 31.2
Cfa020674 Carpinus fangiana HOM05D003999 ORTHO05D005219 8.4e-34 149.1 72 88.9
Mapoly0046s0104 Marchantia polymorpha HOM05D003999 ORTHO05D005219 1.9e-33 147.9 257 32.3
Aa31LG8G16300 Aethionema arabicum HOM05D003999 ORTHO05D005219 1.6e-32 144.8 267 34.8
Prupe.5G240400 Prunus persica HOM05D003999 ORTHO05D005219 3.5e-32 143.7 147 55.8
SalBow5G4070 Salvia bowleyana HOM05D003999 ORTHO05D005219 3.5e-32 143.7 166 45.8
GSVIVG01010859001 Vitis vinifera HOM05D003999 ORTHO05D005219 5.1e-31 139.8 160 48.1
CARHR109720 Cardamine hirsuta HOM05D003999 ORTHO05D005219 2.5e-30 137.5 205 40.0
ECA234G1030 Erigeron canadensis HOM05D003999 ORTHO05D005219 3.3e-30 137.1 176 44.3
SEGI_05476 Sequoiadendron giganteum HOM05D003999 ORTHO05D005219 5.7e-30 136.3 292 31.5
SMO117G0282 Selaginella moellendorffii HOM05D003999 ORTHO05D005219 9.7e-30 135.6 298 28.2
RcHm_v2.0_Chr7g0177591 Rosa chinensis HOM05D003999 ORTHO05D005219 4.8e-29 133.3 161 46.6
PGSC0003DMG400021118 Solanum tuberosum HOM05D003999 ORTHO05D005219 2.0e-27 127.9 417 28.5
FvH4_5g18011 Fragaria vesca HOM05D003999 ORTHO05D005219 4.5e-27 126.7 161 46.0
FAN18G0538 Fragaria x ananassa HOM05D003999 ORTHO05D005219 4.5e-27 126.7 161 46.0
Oeu064556.1 Olea europaea HOM05D003999 ORTHO05D005219 4.5e-27 126.7 191 35.6
MD06G1235600 Malus domestica HOM05D003999 ORTHO05D005219 5.9e-27 126.3 155 47.7
HPP92_010790 Vanilla planifolia HOM05D003999 ORTHO05D005219 5.0e-26 123.2 161 42.2
GSVIVG01035550001 Vitis vinifera HOM05D003999 ORTHO05D005219 5.0e-26 123.2 73 69.9
Manes.03G002401 Manihot esculenta HOM05D003999 ORTHO05D005219 4.2e-25 120.2 145 46.2
SEGI_29375 Sequoiadendron giganteum HOM05D003999 ORTHO05D005219 9.4e-25 119.0 231 34.2
ClCG06G013610 Citrullus lanatus HOM05D003999 ORTHO05D005219 2.7e-24 117.5 83 66.3
FAN13G0118 Fragaria x ananassa HOM05D003999 ORTHO05D005219 2.7e-24 117.5 159 42.8
MSTRG.10442 Avicennia marina HOM05D003999 ORTHO05D005219 3.6e-24 117.1 95 58.9
MBI16_g10833_MAGBIO Magnolia biondii HOM05D003999 ORTHO05D005219 1.5e-22 111.7 183 37.7
Phvul.007G142700 Phaseolus vulgaris HOM05D003999 ORTHO05D005219 1.8e-20 104.8 167 37.7
SEGI_17596 Sequoiadendron giganteum HOM05D003999 ORTHO05D005219 3.0e-15 87.4 167 32.3
MSTRG.10441 Avicennia marina HOM05D003999 ORTHO05D005219 1.5e-14 85.1 126 34.9
PGR044G2313 Punica granatum HOM05D003999 ORTHO05D005219 7.0e-12 76.3 296 28.7
Peaxi162Scf00618g00224 Petunia axillaris HOM05D002415 ORTHO05D002522 1.4e-07 62.0 64 40.6
CDE08G1116 Ceratophyllum demersum HOM05D004258 ORTHO05D005163 6.7e-07 59.7 95 36.8
BraA09t36876Z Brassica rapa HOM05D003999 ORTHO05D005219 1.5e-06 58.5 57 40.4
Sed0013187 Sechium edule HOM05D004258 ORTHO05D005163 2.0e-06 58.2 59 37.3
Lsat_1_v5_gn_2_135300 Lactuca sativa HOM05D002415 ORTHO05D002522 2.6e-06 57.8 67 38.8
Peaxi162Scf00066g00717 Petunia axillaris HOM05D004258 ORTHO05D005163 2.6e-06 57.8 76 32.9
CDE06G0269 Ceratophyllum demersum HOM05D004258 ORTHO05D005163 3.3e-06 57.4 54 44.4
Sed0013494 Sechium edule HOM05D004258 ORTHO05D005163 3.3e-06 57.4 84 33.3
AT1G63490 Arabidopsis thaliana HOM05D000329 ORTHO05D000833 5.7e-06 56.6 73 31.5
Potri.002G076900 Populus trichocarpa HOM05D004258 ORTHO05D005163 5.7e-06 56.6 60 38.3
QL09p007788 Quercus lobata HOM05D002415 ORTHO05D002522 5.7e-06 56.6 66 37.9
A09p12320 Brassica napus HOM05D003999 ORTHO05D005219 7.4e-06 56.2 48 43.8
ECA238G2304 Erigeron canadensis HOM05D002415 ORTHO05D002522 7.4e-06 56.2 46 43.5
HanXRQChr04g0100461 Helianthus annuus HOM05D002415 ORTHO05D002522 7.4e-06 56.2 58 41.4
Lalb_Chr09g0321021 Lupinus albus HOM05D000329 ORTHO05D000833 7.4e-06 56.2 90 30.0
THA.LOC104803335 Tarenaya hassleriana HOM05D002415 ORTHO05D002522 7.4e-06 56.2 55 41.8
Eucgr.L00408 Eucalyptus grandis HOM05D004258 ORTHO05D005163 9.7e-06 55.8 69 34.8


User provided reference genes

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