Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa019978 Carpinus fangiana HOM05D000297 ORTHO05D126377 8.2e-26 119.8 68 100.0
Cfa014224 Carpinus fangiana HOM05D000588 ORTHO05D000637 2.2e-10 68.6 50 78.0
Haze_12627 Corylus avellana HOM05D000297 ORTHO05D000193 2.2e-10 68.6 50 78.0
Thecc.06G240500 Theobroma cacao HOM05D000297 ORTHO05D000193 9.1e-09 63.2 49 69.4
GSVIVG01030085001 Vitis vinifera HOM05D000588 ORTHO05D000637 9.1e-09 63.2 49 69.4
Atru.chr6.3397 Acer truncatum HOM05D000297 ORTHO05D000193 1.2e-08 62.8 49 69.4
QL04p068467 Quercus lobata HOM05D000297 ORTHO05D000193 1.2e-08 62.8 50 72.0
TAR624G1448 Trochodendron aralioides HOM05D000297 ORTHO05D000193 1.2e-08 62.8 49 67.3
Manes.13G061801 Manihot esculenta HOM05D000297 ORTHO05D000193 2.0e-08 62.0 49 67.3
TAR629G1704 Trochodendron aralioides HOM05D000297 ORTHO05D000193 2.0e-08 62.0 49 67.3
Dinv21299 Davidia involucrata HOM05D000297 ORTHO05D000193 2.7e-08 61.6 49 67.3
Dinv26603 Davidia involucrata HOM05D000297 ORTHO05D000193 2.7e-08 61.6 49 67.3
TAR629G3062 Trochodendron aralioides HOM05D000297 ORTHO05D000193 2.7e-08 61.6 49 67.3
FvH4_6g40600 Fragaria vesca HOM05D000297 ORTHO05D000193 3.5e-08 61.2 49 67.3
FAN02G3572 Fragaria x ananassa HOM05D000297 ORTHO05D000193 3.5e-08 61.2 49 67.3
FAN05G0577 Fragaria x ananassa HOM05D000297 ORTHO05D000193 3.5e-08 61.2 49 67.3
FAN09G3314 Fragaria x ananassa HOM05D000297 ORTHO05D000193 3.5e-08 61.2 49 67.3
FAN14G1515 Fragaria x ananassa HOM05D000297 ORTHO05D000193 3.5e-08 61.2 49 67.3
RcHm_v2.0_Chr2g0155961 Rosa chinensis HOM05D000297 ORTHO05D000193 3.5e-08 61.2 49 67.3
CiPaw.04G197100 Carya illinoinensis HOM05D000297 ORTHO05D000193 1.0e-07 59.7 51 70.6
Glyma.08G329300 Glycine max HOM05D000297 ORTHO05D000193 1.0e-07 59.7 49 65.3
Glyma.18G077500 Glycine max HOM05D000297 ORTHO05D000193 1.0e-07 59.7 49 65.3
Phvul.006G056950 Phaseolus vulgaris HOM05D000297 ORTHO05D000193 1.0e-07 59.7 49 65.3
TWI18G0153 Tripterygium wilfordii HOM05D000297 ORTHO05D000193 1.0e-07 59.7 49 67.3
VMungo0540G2410 Vigna mungo HOM05D000297 ORTHO05D000193 1.0e-07 59.7 49 65.3
Cpa.g.sc136.31 Carica papaya HOM05D000297 ORTHO05D000193 1.3e-07 59.3 50 68.0
ECA234G0753 Erigeron canadensis HOM05D000297 ORTHO05D000193 1.3e-07 59.3 49 69.4
ATR0827G083 Amborella trichopoda HOM05D000297 ORTHO05D000193 1.7e-07 58.9 50 68.0
CiPaw.03G282000 Carya illinoinensis HOM05D000297 ORTHO05D000193 1.7e-07 58.9 49 67.3
QL05p067816 Quercus lobata HOM05D000297 ORTHO05D000193 2.3e-07 58.5 49 69.4
Lalb_Chr17g0348951 Lupinus albus HOM05D000297 ORTHO05D000193 2.9e-07 58.2 49 65.3
Prupe.3G197300 Prunus persica HOM05D000297 ORTHO05D000193 2.9e-07 58.2 51 66.7
Thecc.01G196300 Theobroma cacao HOM05D000297 ORTHO05D000193 2.9e-07 58.2 51 66.7
CSS0007746 Camellia sinensis var. sinensis HOM05D000297 ORTHO05D000193 3.8e-07 57.8 49 67.3
HanXRQChr11g0329001 Helianthus annuus HOM05D000297 ORTHO05D000193 3.8e-07 57.8 49 67.3
MBI19_g14896_MAGBIO Magnolia biondii HOM05D000297 ORTHO05D000193 3.8e-07 57.8 48 68.8
MD09G1126900 Malus domestica HOM05D000297 ORTHO05D000193 3.8e-07 57.8 51 66.7
Manes.12G066300 Manihot esculenta HOM05D000297 ORTHO05D000193 3.8e-07 57.8 49 67.3
GSVIVG01014673001 Vitis vinifera HOM05D000297 ORTHO05D000193 3.8e-07 57.8 49 67.3
Lj6g0000035 Lotus japonicus HOM05D000297 ORTHO05D000193 5.0e-07 57.4 53 62.3
Potri.001G367500 Populus trichocarpa HOM05D000297 ORTHO05D000193 5.0e-07 57.4 49 65.3
Sabra14G0127600 Salix brachista HOM05D000297 ORTHO05D000193 5.0e-07 57.4 49 67.3
TAR626G1322 Trochodendron aralioides HOM05D000297 ORTHO05D000193 5.0e-07 57.4 49 67.3
AUR62017094 Chenopodium quinoa HOM05D000297 ORTHO05D000193 6.6e-07 57.0 49 65.3
AUR62036449 Chenopodium quinoa HOM05D000297 ORTHO05D000193 6.6e-07 57.0 49 65.3
Lsat_1_v5_gn_5_122040 Lactuca sativa HOM05D000297 ORTHO05D000193 6.6e-07 57.0 49 67.3
Nn1g03184 Nelumbo nucifera HOM05D000297 ORTHO05D000193 6.6e-07 57.0 49 67.3
Sabra16G0010900 Salix brachista HOM05D000297 ORTHO05D000193 6.6e-07 57.0 49 67.3
MSTRG.14485 Avicennia marina HOM05D000297 ORTHO05D000193 8.6e-07 56.6 49 63.3
CDE06G0905 Ceratophyllum demersum HOM05D000297 ORTHO05D000193 8.6e-07 56.6 49 65.3
Ca_22136_v3 Cicer arietinum L. HOM05D000297 ORTHO05D000193 8.6e-07 56.6 52 63.5
Ca_30467_v3 Cicer arietinum L. HOM05D000297 ORTHO05D000193 8.6e-07 56.6 52 63.5
Duzib138G1115 Durio zibethinus HOM05D000297 ORTHO05D000193 8.6e-07 56.6 51 64.7
HanXRQChr04g0126601 Helianthus annuus HOM05D000297 ORTHO05D000193 8.6e-07 56.6 49 67.3
HanXRQChr04g0126621 Helianthus annuus HOM05D000297 ORTHO05D000193 8.6e-07 56.6 49 67.3
MD17G1117200 Malus domestica HOM05D000297 ORTHO05D000193 8.6e-07 56.6 51 64.7
HPP92_001841 Vanilla planifolia HOM05D000297 ORTHO05D000193 8.6e-07 56.6 49 65.3
Oeu005961.1 Olea europaea HOM05D000297 ORTHO05D000193 1.1e-06 56.2 49 63.3
HPP92_007734 Vanilla planifolia HOM05D000297 ORTHO05D000193 1.1e-06 56.2 52 67.3
CSS0050232 Camellia sinensis var. sinensis HOM05D000297 ORTHO05D000193 1.5e-06 55.8 49 65.3
ClCG02G009200 Citrullus lanatus HOM05D000297 ORTHO05D000193 1.5e-06 55.8 49 65.3
MELO3C025951.2 Cucumis melo HOM05D000297 ORTHO05D000193 1.5e-06 55.8 49 65.3
CsaV3_6G009670 Cucumis sativus L. HOM05D000297 ORTHO05D000193 1.5e-06 55.8 49 65.3
Dinv10328 Davidia involucrata HOM05D000297 ORTHO05D000193 1.5e-06 55.8 49 67.3
Potri.014G167800 Populus trichocarpa HOM05D000297 ORTHO05D000193 1.5e-06 55.8 49 65.3
Duzib211G0459 Durio zibethinus HOM05D000297 ORTHO05D000193 1.9e-06 55.5 51 64.7
Eucgr.L00153 Eucalyptus grandis HOM05D000297 ORTHO05D000193 1.9e-06 55.5 50 66.0
Gohir.A13G133200 Gossypium hirsutum HOM05D000297 ORTHO05D000193 1.9e-06 55.5 50 68.0
Lsat_1_v5_gn_7_96781 Lactuca sativa HOM05D000297 ORTHO05D000193 1.9e-06 55.5 49 65.3
Lj1A796T36 Lonicera japonica HOM05D000297 ORTHO05D000193 1.9e-06 55.5 49 65.3
Os03g0413000 Oryza sativa ssp. japonica HOM05D000297 ORTHO05D000193 1.9e-06 55.5 49 65.3
PSO063G4848 Papaver somniferum HOM05D000297 ORTHO05D000193 1.9e-06 55.5 49 65.3
PSO339G5308 Papaver somniferum HOM05D000297 ORTHO05D000193 1.9e-06 55.5 49 65.3
PSO541G0631 Papaver somniferum HOM05D000297 ORTHO05D000193 1.9e-06 55.5 49 65.3
PSO675G2790 Papaver somniferum HOM05D000297 ORTHO05D000193 1.9e-06 55.5 49 65.3
Phvul.006G139401 Phaseolus vulgaris HOM05D000297 ORTHO05D000193 1.9e-06 55.5 51 66.7
GSVIVG01004375001 Vitis vinifera HOM05D000297 ORTHO05D024865 1.9e-06 55.5 53 66.0
CDE04G0775 Ceratophyllum demersum HOM05D000297 ORTHO05D000193 2.5e-06 55.1 49 63.3
Cc05_g14900 Coffea canephora HOM05D000297 ORTHO05D000193 2.5e-06 55.1 49 61.2
Haze_07015 Corylus avellana HOM05D000297 ORTHO05D000193 2.5e-06 55.1 49 65.3
Migut.M00176 Erythranthe guttata HOM05D000297 ORTHO05D000193 2.5e-06 55.1 49 65.3
Migut.O00326 Erythranthe guttata HOM05D000297 ORTHO05D000193 2.5e-06 55.1 49 65.3
Glyma.03G091700 Glycine max HOM05D000297 ORTHO05D000193 2.5e-06 55.1 48 64.6
Lalb_Chr10g0107411 Lupinus albus HOM05D000297 ORTHO05D000193 2.5e-06 55.1 49 65.3
Nitab4.5_0006039g0010 Nicotiana tabacum HOM05D000297 ORTHO05D000193 2.5e-06 55.1 49 65.3
Nitab4.5_0013475g0010 Nicotiana tabacum HOM05D000297 ORTHO05D000193 2.5e-06 55.1 49 65.3
Oeu014357.1 Olea europaea HOM05D000297 ORTHO05D000193 2.5e-06 55.1 49 65.3
QL08p004215 Quercus lobata HOM05D000297 ORTHO05D000193 2.5e-06 55.1 50 68.0
Rhsim04G0029300 Rhododendron simsii HOM05D000297 ORTHO05D000193 2.5e-06 55.1 49 65.3
RhsimUnG0230600 Rhododendron simsii HOM05D000297 ORTHO05D000193 2.5e-06 55.1 49 65.3
Solyc12g006120.3 Solanum lycopersicum HOM05D000297 ORTHO05D000193 2.5e-06 55.1 49 65.3
Sopen12g002080 Solanum pennellii HOM05D000297 ORTHO05D000193 2.5e-06 55.1 49 65.3
SGA_v2.0_scaffold34G13944 Striga asiatica HOM05D000297 ORTHO05D000193 2.5e-06 55.1 49 65.3
SGA_v2.0_scaffold70G23513 Striga asiatica HOM05D000297 ORTHO05D000193 2.5e-06 55.1 49 65.3
Nn1g07505 Nelumbo nucifera HOM05D000297 ORTHO05D000193 3.3e-06 54.7 49 65.3
Phvul.008G278900 Phaseolus vulgaris HOM05D000297 ORTHO05D000193 3.3e-06 54.7 51 62.7
unitig_62.g23325 Utricularia gibba HOM05D000297 ORTHO05D000193 3.3e-06 54.7 49 65.3
VMungo0647G2122 Vigna mungo HOM05D000297 ORTHO05D000193 3.3e-06 54.7 51 62.7
arahy.Tifrunner.gnm1.ann1.8XPX7R Arachis hypogaea HOM05D000297 ORTHO05D000193 4.2e-06 54.3 50 64.0
arahy.Tifrunner.gnm1.ann1.BTE5MM Arachis hypogaea HOM05D000297 ORTHO05D000193 4.2e-06 54.3 50 64.0
EL10Ac9g22678 Beta vulgaris HOM05D000297 ORTHO05D000193 4.2e-06 54.3 49 65.3
CAN.G294.28 Capsicum annuum HOM05D000297 ORTHO05D000193 4.2e-06 54.3 49 65.3
Cfa000040 Carpinus fangiana HOM05D000297 ORTHO05D000193 4.2e-06 54.3 49 65.3
CiPaw.11G203400 Carya illinoinensis HOM05D000297 ORTHO05D000193 4.2e-06 54.3 52 61.5
COL.COLO4_19615 Corchorus olitorius HOM05D000297 ORTHO05D000193 4.2e-06 54.3 51 62.7
Gohir.A11G148900 Gossypium hirsutum HOM05D000297 ORTHO05D000193 4.2e-06 54.3 51 62.7
Gohir.D11G155950 Gossypium hirsutum HOM05D000297 ORTHO05D000193 4.2e-06 54.3 51 62.7
Gorai.007G166100 Gossypium raimondii HOM05D000297 ORTHO05D000193 4.2e-06 54.3 51 62.7
Actinidia05011 Actinidia chinensis HOM05D000297 ORTHO05D000193 5.5e-06 53.9 50 64.0
BcaB04g18867 Brassica carinata HOM05D000297 ORTHO05D000193 5.5e-06 53.9 49 65.3
BcaB04g20892 Brassica carinata HOM05D000297 ORTHO05D000193 5.5e-06 53.9 49 65.3
BcaC01g03849 Brassica carinata HOM05D000297 ORTHO05D000193 5.5e-06 53.9 49 65.3
BcaC09g48572 Brassica carinata HOM05D000297 ORTHO05D000193 5.5e-06 53.9 49 65.3
A01p38170 Brassica napus HOM05D000297 ORTHO05D000193 5.5e-06 53.9 49 65.3
A03p39590 Brassica napus HOM05D000297 ORTHO05D000193 5.5e-06 53.9 49 65.3
C01p48430 Brassica napus HOM05D000297 ORTHO05D000193 5.5e-06 53.9 49 65.3
C03p47960 Brassica napus HOM05D000297 ORTHO05D000193 5.5e-06 53.9 49 65.3
BolC1t04803H Brassica oleracea HOM05D000297 ORTHO05D000193 5.5e-06 53.9 49 65.3
BraA01t03875Z Brassica rapa HOM05D000297 ORTHO05D000193 5.5e-06 53.9 49 65.3
BraA03t13107Z Brassica rapa HOM05D000297 ORTHO05D000193 5.5e-06 53.9 49 65.3
CANSAT11G2562 Cannabis sativa HOM05D000297 ORTHO05D000193 5.5e-06 53.9 50 64.0
Cfa020197 Carpinus fangiana HOM05D000297 ORTHO05D000193 5.5e-06 53.9 50 64.0
Haze_09818 Corylus avellana HOM05D000297 ORTHO05D000193 5.5e-06 53.9 50 64.0
HanXRQChr08g0233131 Helianthus annuus HOM05D000297 ORTHO05D000193 5.5e-06 53.9 49 65.3
Lsat_1_v5_gn_5_1080 Lactuca sativa HOM05D000297 ORTHO05D000193 5.5e-06 53.9 49 65.3
Manes.15G060400 Manihot esculenta HOM05D000297 ORTHO05D000193 5.5e-06 53.9 53 64.2
Sed0006837 Sechium edule HOM05D000297 ORTHO05D000193 5.5e-06 53.9 49 63.3
Sc03g0011240 Simmondsia chinensis HOM05D000297 ORTHO05D000193 5.5e-06 53.9 53 62.3
THA.LOC104826629 Tarenaya hassleriana HOM05D000297 ORTHO05D000193 5.5e-06 53.9 51 62.7
TPR.G24145 Trifolium pratense HOM05D000297 ORTHO05D000193 5.5e-06 53.9 51 62.7
Aa31sc324G20 Aethionema arabicum HOM05D000297 ORTHO05D000193 7.2e-06 53.5 49 65.3
AL7G41600 Arabidopsis lyrata HOM05D000297 ORTHO05D000193 7.2e-06 53.5 49 65.3
AT4G14540 Arabidopsis thaliana HOM05D000297 ORTHO05D000193 7.2e-06 53.5 49 65.3
Carub.0007s2767 Capsella rubella HOM05D000297 ORTHO05D000193 7.2e-06 53.5 49 65.3
CARHR220750 Cardamine hirsuta HOM05D000297 ORTHO05D000193 7.2e-06 53.5 49 65.3
DCAR_019679 Daucus carota HOM05D000297 ORTHO05D000193 7.2e-06 53.5 49 65.3
Thhalv10021580m.g Eutrema salsugineum HOM05D000297 ORTHO05D000193 7.2e-06 53.5 49 65.3
Oeu041439.1 Olea europaea HOM05D000297 ORTHO05D000193 7.2e-06 53.5 49 63.3
Potri.006G005500 Populus trichocarpa HOM05D000297 ORTHO05D000193 7.2e-06 53.5 50 62.0
Sp3g14280 Schrenkiella parvula HOM05D000297 ORTHO05D000193 7.2e-06 53.5 49 65.3
TWI36G1163 Tripterygium wilfordii HOM05D000297 ORTHO05D000193 7.2e-06 53.5 49 65.3
vmacro12081 Vaccinium macrocarpon HOM05D000297 ORTHO05D000193 7.2e-06 53.5 49 63.3
CANSAT56G4001 Cannabis sativa HOM05D000297 ORTHO05D000193 9.5e-06 53.1 49 65.3
Ca_06394_v3 Cicer arietinum L. HOM05D000297 ORTHO05D000193 9.5e-06 53.1 49 63.3
Dinv40854 Davidia involucrata HOM05D000297 ORTHO05D000193 9.5e-06 53.1 49 63.3
Gohir.D13G136500 Gossypium hirsutum HOM05D000297 ORTHO05D000193 9.5e-06 53.1 50 66.0
Gorai.013G153100 Gossypium raimondii HOM05D000297 ORTHO05D000193 9.5e-06 53.1 50 66.0


User provided reference genes

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