Gene: AT4G14540

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT4G14540
  • Transcript Identifier AT4G14540.1
  • Gene Type Coding gene
  • Location Chr4 : 8344663-8345148 : positive

Gene Family Information

  • ID HOM05D000297
  • #Genes/#Species 1509/99
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT4G14540.1
  • symbol NF-YB3
  • full_name nuclear factor Y%2C subunit B3
  • uniprot O23310

Descriptions

  • Description nuclear factor Y, subunit B3
  • Computational description nuclear factor Y, subunit B3 (NF-YB3); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus, intracellular; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Transcription factor, CBFA/NFYB, DNA topoisomerase (InterPro:IPR003957), Transcription factor CBF/NF-Y/archaeal histone (InterPro:IPR003958), Histone-fold (InterPro:IPR009072), Transcription factor, NFYB/HAP3, conserved site (InterPro:IPR003956); BEST Arabidopsis thaliana protein match is: nuclear factor Y, subunit B2 (TAIR:AT5G47640.1); Has 1532 Blast hits to 1532 proteins in 250 species: Archae - 0; Bacteria - 1; Metazoa - 503; Fungi - 375; Plants - 529; Viruses - 0; Other Eukaryotes - 124 (source: NCBI BLink).
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0009414
ISO
PLAZA Integrative Orthologyresponse to water deprivation Solyc07g065500.2
GO:0051512
ISO
PLAZA Integrative Orthologypositive regulation of unidimensional cell growth Os08g0174500
GO:0048579
ISO
PLAZA Integrative Orthologynegative regulation of long-day photoperiodism, flowering Os08g0174500
GO:0006355
IEA
GOA Databaseregulation of transcription, DNA-templated
GO:0006355
IEA
InterProregulation of transcription, DNA-templated
GO:0045944
IEA
GOA Databasepositive regulation of transcription by RNA polymerase II
GO:0006357
IBA
Gene Ontologyregulation of transcription by RNA polymerase II1

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003677
IEA
GOA DatabaseDNA binding
GO:0046982
IEA
Gene Ontologyprotein heterodimerization activity
GO:0046982
IEA
InterProprotein heterodimerization activity
GO:0001228
IEA
Gene OntologyDNA-binding transcription activator activity, RNA polymerase II-specific
GO:0001228
IEA
InterProDNA-binding transcription activator activity, RNA polymerase II-specific
GO:0043565
IEA
GOA Databasesequence-specific DNA binding
GO:0000978
IBA
Gene OntologyRNA polymerase II cis-regulatory region sequence-specific DNA binding1
GO:0000981
IBA
Gene OntologyDNA-binding transcription factor activity, RNA polymerase II-specific1
GO:0005515
IPI
Gene Ontologyprotein binding2
GO:0003700
ISS
Gene OntologyDNA-binding transcription factor activity3

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005737
ISO
PLAZA Integrative Orthologycytoplasm Os03g0413000
GO:0016602
IEA
GOA DatabaseCCAAT-binding factor complex
GO:0016602
IBA
Gene OntologyCCAAT-binding factor complex1
GO:0016602
IEA
InterProCCAAT-binding factor complex
GO:0005634
IEA
GOA Databasenucleus
GO:0005634
ISM
Gene Ontologynucleus
GO:0005829
HDA
Gene Ontologycytosol4

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR003958 Transcription factor CBF/NF-Y/archaeal histone domain
IPR027113 Transcription factor NFYB/HAP3
IPR009072 Histone-fold
Mapman id Description
15.5.49.2 RNA biosynthesis.transcriptional regulation.NF-Y transcription factor complex.component NF-YB