Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa019374 Carpinus fangiana HOM05D005962 ORTHO05D007325 4.3e-42 174.1 80 100.0
Haze_15888 Corylus avellana HOM05D005962 ORTHO05D007325 1.2e-36 156.0 74 94.6
CANSAT21G1984 Cannabis sativa HOM05D005962 ORTHO05D007325 2.5e-29 131.7 74 82.4
Nn4g25123 Nelumbo nucifera HOM05D005962 ORTHO05D007325 4.2e-29 131.0 71 83.1
CsaV3_3G023410 Cucumis sativus L. HOM05D005962 ORTHO05D007325 1.2e-28 129.4 72 83.3
MELO3C013015.2 Cucumis melo HOM05D005962 ORTHO05D007325 1.6e-28 129.0 79 79.7
ECA248G1573 Erigeron canadensis HOM05D005962 ORTHO05D007325 1.6e-28 129.0 74 81.1
VMungo0331G0822 Vigna mungo HOM05D005962 ORTHO05D007325 2.1e-28 128.6 67 88.1
Cpa.g.sc131.1 Carica papaya HOM05D005962 ORTHO05D007325 2.7e-28 128.3 79 77.2
DCAR_007600 Daucus carota HOM05D005962 ORTHO05D007325 3.6e-28 127.9 71 78.9
Sed0025844 Sechium edule HOM05D005962 ORTHO05D007325 7.9e-28 126.7 69 84.1
Actinidia32123 Actinidia chinensis HOM05D005962 ORTHO05D007325 1.0e-27 126.3 73 76.7
Gohir.D01G215700 Gossypium hirsutum HOM05D005962 ORTHO05D007325 1.0e-27 126.3 74 79.7
Hma1.2p1_0764F.1_g214960 Hydrangea macrophylla HOM05D005962 ORTHO05D007325 1.0e-27 126.3 73 80.8
Hma1.2p1_2308F.1_g319480 Hydrangea macrophylla HOM05D005962 ORTHO05D007325 1.0e-27 126.3 73 80.8
ClCG07G013490 Citrullus lanatus HOM05D005962 ORTHO05D007325 1.4e-27 125.9 72 80.6
Lj3g0005277 Lotus japonicus HOM05D005962 ORTHO05D007325 1.4e-27 125.9 74 81.1
Lalb_Chr01g0013231 Lupinus albus HOM05D005962 ORTHO05D007325 1.4e-27 125.9 76 76.3
Atru.chr12.732 Acer truncatum HOM05D005962 ORTHO05D007325 1.8e-27 125.6 74 78.4
Dinv37956 Davidia involucrata HOM05D005962 ORTHO05D007325 1.8e-27 125.6 74 74.3
Nitab4.5_0001172g0180 Nicotiana tabacum HOM05D005962 ORTHO05D007325 1.8e-27 125.6 73 78.1
Rhsim08G0229500 Rhododendron simsii HOM05D005962 ORTHO05D007325 1.8e-27 125.6 74 78.4
Rhsim08G0229700 Rhododendron simsii HOM05D005962 ORTHO05D007325 1.8e-27 125.6 74 77.0
AUR62020986 Chenopodium quinoa HOM05D005962 ORTHO05D007325 2.3e-27 125.2 73 79.5
Cc00_g23930 Coffea canephora HOM05D005962 ORTHO05D007325 2.3e-27 125.2 73 76.7
Prupe.3G054900 Prunus persica HOM05D005962 ORTHO05D007325 2.3e-27 125.2 77 77.9
TAR623G1297 Trochodendron aralioides HOM05D005962 ORTHO05D007325 2.3e-27 125.2 71 80.3
COL.COLO4_30547 Corchorus olitorius HOM05D005962 ORTHO05D007325 3.0e-27 124.8 78 76.9
Lj5C50T14 Lonicera japonica HOM05D005962 ORTHO05D007325 3.0e-27 124.8 75 76.0
Glyma.08G199200 Glycine max HOM05D005962 ORTHO05D007325 3.9e-27 124.4 67 85.1
Thecc.06G103400 Theobroma cacao HOM05D005962 ORTHO05D007325 3.9e-27 124.4 78 75.6
Ah.04g150140 Amaranthus hybridus HOM05D005962 ORTHO05D007325 5.1e-27 124.0 73 80.8
Gohir.A10G063800 Gossypium hirsutum HOM05D005962 ORTHO05D007325 6.7e-27 123.6 78 74.4
Gohir.D10G065400 Gossypium hirsutum HOM05D005962 ORTHO05D007325 6.7e-27 123.6 78 74.4
Ca_23283_v3 Cicer arietinum L. HOM05D005962 ORTHO05D007325 8.8e-27 123.2 69 82.6
MBI01_g35895_MAGBIO Magnolia biondii HOM05D005962 ORTHO05D007325 8.8e-27 123.2 66 84.8
Phvul.010G143300 Phaseolus vulgaris HOM05D005962 ORTHO05D007325 8.8e-27 123.2 67 83.6
Psat4g195960 Pisum sativum HOM05D005962 ORTHO05D007325 8.8e-27 123.2 69 81.2
Sabra17G0126400 Salix brachista HOM05D005962 ORTHO05D007325 1.1e-26 122.9 80 75.0
vmacro18833 Vaccinium macrocarpon HOM05D005962 ORTHO05D007325 1.1e-26 122.9 74 74.3
TWI12G1051 Tripterygium wilfordii HOM05D005962 ORTHO05D007325 1.5e-26 122.5 72 75.0
CiPaw.02G144100 Carya illinoinensis HOM05D005962 ORTHO05D007325 2.0e-26 122.1 77 76.6
Lsat_1_v5_gn_5_181040 Lactuca sativa HOM05D005962 ORTHO05D007325 2.0e-26 122.1 73 76.7
Manes.11G030300 Manihot esculenta HOM05D005962 ORTHO05D007325 2.0e-26 122.1 74 75.7
Oeu024256.1 Olea europaea HOM05D005962 ORTHO05D007325 2.0e-26 122.1 83 73.5
ATR0705G221 Amborella trichopoda HOM05D005962 ORTHO05D007325 2.5e-26 121.7 77 76.6
arahy.Tifrunner.gnm1.ann1.FEFU12 Arachis hypogaea HOM05D005962 ORTHO05D007325 3.3e-26 121.3 76 75.0
AUR62018448 Chenopodium quinoa HOM05D005962 ORTHO05D007325 3.3e-26 121.3 73 78.1
FAN05G1114 Fragaria x ananassa HOM05D005962 ORTHO05D007325 3.3e-26 121.3 77 75.3
Aqoxy2G04031 Aquilegia oxysepala HOM05D005962 ORTHO05D007325 4.3e-26 120.9 66 83.3
Duzib192G0276 Durio zibethinus HOM05D005962 ORTHO05D007325 5.7e-26 120.6 74 74.3
Gorai.002G261900 Gossypium raimondii HOM05D005962 ORTHO05D007325 5.7e-26 120.6 74 77.0
Sopen12g023060 Solanum pennellii HOM05D005962 ORTHO05D007325 5.7e-26 120.6 73 76.7
Medtr8g015230 Medicago truncatula HOM05D005962 ORTHO05D007325 7.4e-26 120.2 69 81.2
Manes.04G136400 Manihot esculenta HOM05D005962 ORTHO05D007325 9.7e-26 119.8 74 75.7
Solyc12g044640.2 Solanum lycopersicum HOM05D005962 ORTHO05D007325 9.7e-26 119.8 73 76.7
PGSC0003DMG400026839 Solanum tuberosum HOM05D005962 ORTHO05D007325 9.7e-26 119.8 73 76.7
Nitab4.5_0002423g0030 Nicotiana tabacum HOM05D005962 ORTHO05D007325 1.3e-25 119.4 73 79.5
FvH4_6g32730 Fragaria vesca HOM05D005962 ORTHO05D007325 1.7e-25 119.0 77 74.0
FAN02G1749 Fragaria x ananassa HOM05D005962 ORTHO05D007325 1.7e-25 119.0 77 74.0
PSO210G0258 Papaver somniferum HOM05D005962 ORTHO05D007325 1.7e-25 119.0 75 76.0
QL08p056642 Quercus lobata HOM05D005962 ORTHO05D007325 1.7e-25 119.0 75 78.7
RcHm_v2.0_Chr2g0141751 Rosa chinensis HOM05D005962 ORTHO05D007325 1.7e-25 119.0 77 74.0
EL10Ac3g07358 Beta vulgaris HOM05D005962 ORTHO05D007325 2.2e-25 118.6 73 76.7
Gohir.A01G226000 Gossypium hirsutum HOM05D005962 ORTHO05D007325 2.8e-25 118.2 74 75.7
Gorai.011G069400 Gossypium raimondii HOM05D005962 ORTHO05D007325 4.8e-25 117.5 52 92.3
Peaxi162Scf00038g01151 Petunia axillaris HOM05D005962 ORTHO05D007325 8.2e-25 116.7 64 78.1
Ciclev10026335m.g Citrus clementina HOM05D005962 ORTHO05D007325 1.1e-24 116.3 76 75.0
Eucgr.J02602 Eucalyptus grandis HOM05D005962 ORTHO05D007325 1.1e-24 116.3 78 73.1
arahy.Tifrunner.gnm1.ann1.M52QXX Arachis hypogaea HOM05D005962 ORTHO05D007325 1.4e-24 115.9 51 94.1
MSTRG.11013 Avicennia marina HOM05D005962 ORTHO05D007325 1.4e-24 115.9 75 73.3
FAN09G1055 Fragaria x ananassa HOM05D005962 ORTHO05D007325 1.4e-24 115.9 77 71.4
PSO210G7608 Papaver somniferum HOM05D005962 ORTHO05D007325 1.4e-24 115.9 75 74.7
PGSC0003DMG401002516 Solanum tuberosum HOM05D005962 ORTHO05D007325 1.8e-24 115.5 64 78.1
Sp3g19410 Schrenkiella parvula HOM05D005962 ORTHO05D007325 3.1e-24 114.8 58 84.5
Os06g0217500 Oryza sativa ssp. japonica HOM05D005962 ORTHO05D007325 4.1e-24 114.4 65 80.0
BcaB06g26231 Brassica carinata HOM05D005962 ORTHO05D007325 5.3e-24 114.0 58 84.5
Sopen03g040020 Solanum pennellii HOM05D005962 ORTHO05D007325 5.3e-24 114.0 68 77.9
BcaC05g28175 Brassica carinata HOM05D005962 ORTHO05D007325 6.9e-24 113.6 58 84.5
C05p42110 Brassica napus HOM05D005962 ORTHO05D007325 6.9e-24 113.6 58 84.5
BolC5t32941H Brassica oleracea HOM05D005962 ORTHO05D007325 6.9e-24 113.6 58 84.5
BraA05t21615Z Brassica rapa HOM05D005962 ORTHO05D007325 6.9e-24 113.6 58 84.5
SGA_v2.0_scaffold45G16998 Striga asiatica HOM05D005962 ORTHO05D007325 6.9e-24 113.6 77 71.4
CAN.G1143.30 Capsicum annuum HOM05D005962 ORTHO05D007325 9.1e-24 113.2 54 88.9
PGR102G2175 Punica granatum HOM05D005962 ORTHO05D007325 9.1e-24 113.2 54 88.9
Solyc03g121210.4 Solanum lycopersicum HOM05D005962 ORTHO05D007325 1.2e-23 112.8 68 76.5
HanXRQChr15g0489361 Helianthus annuus HOM05D005962 ORTHO05D007325 1.5e-23 112.5 74 71.6
Sc19g0007830 Simmondsia chinensis HOM05D005962 ORTHO05D007325 1.5e-23 112.5 74 71.6
Thhalv10021373m.g Eutrema salsugineum HOM05D005962 ORTHO05D007325 2.0e-23 112.1 58 82.8
A05p27250 Brassica napus HOM05D005962 ORTHO05D007325 2.6e-23 111.7 58 82.8
unitig_32.g10986 Utricularia gibba HOM05D005962 ORTHO05D007325 4.5e-23 110.9 81 66.7
Dinv30416 Davidia involucrata HOM05D005962 ORTHO05D007325 5.9e-23 110.5 71 69.0
Zm00001eb372970 Zea mays HOM05D005962 ORTHO05D007325 5.9e-23 110.5 64 79.7
HPP92_007682 Vanilla planifolia HOM05D005962 ORTHO05D007325 7.7e-23 110.2 73 74.0
GSVIVG01016927001 Vitis vinifera HOM05D005962 ORTHO05D007325 7.7e-23 110.2 47 97.9
Aa31LG8G8050 Aethionema arabicum HOM05D005962 ORTHO05D007325 1.3e-22 109.4 58 81.0
SHI11207 Sapria himalayana HOM05D005962 ORTHO05D007325 1.3e-22 109.4 53 88.7
AL3G35400 Arabidopsis lyrata HOM05D005962 ORTHO05D007325 1.7e-22 109.0 58 81.0
CSS0027495 Camellia sinensis var. sinensis HOM05D005962 ORTHO05D007325 2.2e-22 108.6 47 95.7
AT3G21350 Arabidopsis thaliana HOM05D005962 ORTHO05D007325 2.9e-22 108.2 58 81.0
CARHR097270 Cardamine hirsuta HOM05D005962 ORTHO05D007325 2.9e-22 108.2 58 81.0
Carub.0003s2138 Capsella rubella HOM05D005962 ORTHO05D007325 3.8e-22 107.8 58 79.3
Migut.I00969 Erythranthe guttata HOM05D005962 ORTHO05D007325 5.0e-22 107.5 50 88.0
Migut.I00971 Erythranthe guttata HOM05D005962 ORTHO05D007325 5.0e-22 107.5 50 88.0
Migut.O00801 Erythranthe guttata HOM05D005962 ORTHO05D007325 5.0e-22 107.5 50 88.0
SalBow6G5073 Salvia bowleyana HOM05D005962 ORTHO05D007325 6.5e-22 107.1 50 88.0
Lsat_1_v5_gn_2_99820 Lactuca sativa HOM05D005962 ORTHO05D007325 3.2e-21 104.8 74 68.9
THA.LOC104805924 Tarenaya hassleriana HOM05D005962 ORTHO05D007325 4.7e-20 100.9 65 72.3
AagrBONN_evm.TU.Sc2ySwM_362.1658 Anthoceros agrestis HOM05D005962 ORTHO05D007325 6.1e-20 100.5 52 82.7
Mapoly0012s0176 Marchantia polymorpha HOM05D005962 ORTHO05D007325 7.9e-20 100.1 63 74.6
Pp3c11_22580 Physcomitrium patens HOM05D005962 ORTHO05D007325 1.0e-19 99.8 56 78.6
SMO143G0120 Selaginella moellendorffii HOM05D005962 ORTHO05D007325 7.4e-18 93.6 52 76.9
TAR636G3265 Trochodendron aralioides HOM05D005962 ORTHO05D007325 2.5e-13 78.6 53 69.8
CBR_g22489 Chara braunii HOM05D005962 ORTHO05D007325 5.5e-13 77.4 63 58.7
Pp3c7_2870 Physcomitrium patens HOM05D005962 ORTHO05D007325 1.5e-10 69.3 39 74.4
Nitab4.5_0008212g0010 Nicotiana tabacum HOM05D005962 ORTHO05D007325 1.7e-09 65.9 59 59.3


User provided reference genes

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