Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa019373 Carpinus fangiana HOM05D005962 ORTHO05D007325 5.3e-90 334.3 171 100.0
Haze_15888 Corylus avellana HOM05D005962 ORTHO05D007325 1.0e-88 330.1 171 98.2
CiPaw.02G144100 Carya illinoinensis HOM05D005962 ORTHO05D007325 1.3e-80 303.1 171 89.5
QL08p056642 Quercus lobata HOM05D005962 ORTHO05D007325 8.3e-75 283.9 170 85.9
COL.COLO4_30547 Corchorus olitorius HOM05D005962 ORTHO05D007325 9.2e-74 280.4 172 84.3
Prupe.3G054900 Prunus persica HOM05D005962 ORTHO05D007325 9.2e-74 280.4 171 83.6
Thecc.06G103400 Theobroma cacao HOM05D005962 ORTHO05D007325 9.2e-74 280.4 171 83.6
GSVIVG01016927001 Vitis vinifera HOM05D005962 ORTHO05D007325 1.6e-73 279.6 171 82.5
TAR623G1297 Trochodendron aralioides HOM05D005962 ORTHO05D007325 2.0e-73 279.3 172 82.6
Phvul.010G143300 Phaseolus vulgaris HOM05D005962 ORTHO05D007325 3.5e-73 278.5 171 82.5
Gohir.D01G215700 Gossypium hirsutum HOM05D005962 ORTHO05D007325 5.9e-73 277.7 171 83.0
Gorai.002G261900 Gossypium raimondii HOM05D005962 ORTHO05D007325 5.9e-73 277.7 171 83.0
MBI01_g35895_MAGBIO Magnolia biondii HOM05D005962 ORTHO05D007325 1.0e-72 276.9 171 82.5
Glyma.08G199200 Glycine max HOM05D005962 ORTHO05D007325 2.9e-72 275.4 171 81.9
Gohir.A10G063800 Gossypium hirsutum HOM05D005962 ORTHO05D007325 3.9e-72 275.0 171 83.0
VMungo0331G0822 Vigna mungo HOM05D005962 ORTHO05D007325 5.0e-72 274.6 174 81.6
Gorai.011G069400 Gossypium raimondii HOM05D005962 ORTHO05D007325 6.6e-72 274.2 171 83.6
Lj3g0005277 Lotus japonicus HOM05D005962 ORTHO05D007325 1.1e-71 273.5 174 81.6
Sabra17G0126400 Salix brachista HOM05D005962 ORTHO05D007325 4.3e-71 271.6 171 79.5
Duzib192G0276 Durio zibethinus HOM05D005962 ORTHO05D007325 5.6e-71 271.2 171 81.9
Gohir.D10G065400 Gossypium hirsutum HOM05D005962 ORTHO05D007325 5.6e-71 271.2 171 83.0
Ciclev10026335m.g Citrus clementina HOM05D005962 ORTHO05D007325 7.3e-71 270.8 172 79.1
Atru.chr12.732 Acer truncatum HOM05D005962 ORTHO05D007325 1.2e-70 270.0 171 80.1
Psat4g195960 Pisum sativum HOM05D005962 ORTHO05D007325 2.1e-70 269.2 171 78.4
CSS0027495 Camellia sinensis var. sinensis HOM05D005962 ORTHO05D007325 6.1e-70 267.7 171 79.5
MELO3C013015.2 Cucumis melo HOM05D005962 ORTHO05D007325 1.0e-69 266.9 171 82.5
CANSAT21G1984 Cannabis sativa HOM05D005962 ORTHO05D007325 1.8e-69 266.2 172 76.7
Medtr8g015230 Medicago truncatula HOM05D005962 ORTHO05D007325 2.3e-69 265.8 171 77.2
CsaV3_3G023410 Cucumis sativus L. HOM05D005962 ORTHO05D007325 8.9e-69 263.8 169 81.7
Rhsim08G0229500 Rhododendron simsii HOM05D005962 ORTHO05D007325 8.9e-69 263.8 171 77.2
Manes.11G030300 Manihot esculenta HOM05D005962 ORTHO05D007325 1.2e-68 263.5 171 80.1
SalBow6G5073 Salvia bowleyana HOM05D005962 ORTHO05D007325 1.2e-68 263.5 171 78.9
arahy.Tifrunner.gnm1.ann1.FEFU12 Arachis hypogaea HOM05D005962 ORTHO05D007325 2.6e-68 262.3 170 77.1
Sed0025844 Sechium edule HOM05D005962 ORTHO05D007325 3.4e-68 261.9 171 81.3
Nn4g25123 Nelumbo nucifera HOM05D005962 ORTHO05D007325 5.8e-68 261.2 171 77.2
Lj5A50T68 Lonicera japonica HOM05D005962 ORTHO05D007325 7.5e-68 260.8 171 77.2
TPR.G39766 Trifolium pratense HOM05D005962 ORTHO05D007325 7.5e-68 260.8 171 75.4
ClCG07G013490 Citrullus lanatus HOM05D005962 ORTHO05D007325 9.8e-68 260.4 171 80.7
arahy.Tifrunner.gnm1.ann1.M52QXX Arachis hypogaea HOM05D005962 ORTHO05D007325 2.2e-67 259.2 170 76.5
Rhsim08G0229700 Rhododendron simsii HOM05D005962 ORTHO05D007325 2.2e-67 259.2 171 76.0
Cc00_g23930 Coffea canephora HOM05D005962 ORTHO05D007325 2.9e-67 258.8 171 76.0
Actinidia32123 Actinidia chinensis HOM05D005962 ORTHO05D007325 4.9e-67 258.1 171 77.2
vmacro18833 Vaccinium macrocarpon HOM05D005962 ORTHO05D007325 4.9e-67 258.1 171 76.0
Aqoxy2G04031 Aquilegia oxysepala HOM05D005962 ORTHO05D007325 1.1e-66 256.9 171 78.9
Manes.04G136400 Manihot esculenta HOM05D005962 ORTHO05D007325 1.1e-66 256.9 171 81.3
Peaxi162Scf00038g01151 Petunia axillaris HOM05D005962 ORTHO05D007325 4.1e-66 255.0 171 75.4
TWI12G1051 Tripterygium wilfordii HOM05D005962 ORTHO05D007325 4.1e-66 255.0 171 77.8
PGSC0003DMG401002516 Solanum tuberosum HOM05D005962 ORTHO05D007325 5.4e-66 254.6 171 76.0
Solyc12g044640.2 Solanum lycopersicum HOM05D005962 ORTHO05D007325 9.2e-66 253.8 171 75.4
ECA248G1573 Erigeron canadensis HOM05D005962 ORTHO05D007325 2.0e-65 252.7 163 76.1
PSO210G0258 Papaver somniferum HOM05D005962 ORTHO05D007325 2.0e-65 252.7 169 74.6
PGSC0003DMG400026839 Solanum tuberosum HOM05D005962 ORTHO05D007325 2.7e-65 252.3 171 77.2
Migut.I00971 Erythranthe guttata HOM05D005962 ORTHO05D007325 3.5e-65 251.9 169 78.1
Sc19g0007830 Simmondsia chinensis HOM05D005962 ORTHO05D007325 4.6e-65 251.5 168 75.6
CAN.G1143.30 Capsicum annuum HOM05D005962 ORTHO05D007325 6.0e-65 251.1 171 74.3
PSO210G7608 Papaver somniferum HOM05D005962 ORTHO05D007325 1.0e-64 250.4 169 74.6
DCAR_007600 Daucus carota HOM05D005962 ORTHO05D007325 1.3e-64 250.0 171 74.3
Hma1.2p1_0764F.1_g214960 Hydrangea macrophylla HOM05D005962 ORTHO05D007325 3.9e-64 248.4 171 78.4
Sopen12g023060 Solanum pennellii HOM05D005962 ORTHO05D007325 3.9e-64 248.4 171 76.0
MSTRG.11013 Avicennia marina HOM05D005962 ORTHO05D007325 5.0e-64 248.1 171 74.9
Eucgr.J02602 Eucalyptus grandis HOM05D005962 ORTHO05D007325 5.0e-64 248.1 171 75.4
Lsat_1_v5_gn_5_181040 Lactuca sativa HOM05D005962 ORTHO05D007325 5.0e-64 248.1 162 75.9
Lalb_Chr01g0013231 Lupinus albus HOM05D005962 ORTHO05D007325 5.0e-64 248.1 171 74.3
Nitab4.5_0002423g0030 Nicotiana tabacum HOM05D005962 ORTHO05D007325 1.1e-63 246.9 166 75.9
Hma1.2p1_2308F.1_g319480 Hydrangea macrophylla HOM05D005962 ORTHO05D007325 1.9e-63 246.1 171 77.8
Oeu024256.1 Olea europaea HOM05D005962 ORTHO05D007325 2.5e-63 245.7 171 74.3
MD14G1079700 Malus domestica HOM05D005962 ORTHO05D007325 3.3e-63 245.4 168 77.4
Ca_23283_v3 Cicer arietinum L. HOM05D005962 ORTHO05D007325 1.6e-62 243.0 175 72.6
Nitab4.5_0001172g0180 Nicotiana tabacum HOM05D005962 ORTHO05D007325 2.8e-62 242.3 167 76.0
Sopen03g040020 Solanum pennellii HOM05D005962 ORTHO05D007325 2.8e-62 242.3 171 74.3
HPP92_007682 Vanilla planifolia HOM05D005962 ORTHO05D007325 1.2e-60 236.9 169 72.8
Dinv37956 Davidia involucrata HOM05D005962 ORTHO05D007325 2.0e-60 236.1 137 88.3
PGR102G2175 Punica granatum HOM05D005962 ORTHO05D007325 2.6e-60 235.7 171 70.8
EL10Ac3g07358 Beta vulgaris HOM05D005962 ORTHO05D007325 5.8e-60 234.6 170 71.2
HanXRQChr15g0489361 Helianthus annuus HOM05D005962 ORTHO05D007325 9.8e-60 233.8 162 73.5
RcHm_v2.0_Chr2g0141751 Rosa chinensis HOM05D005962 ORTHO05D007325 1.9e-58 229.6 169 70.4
AUR62020986 Chenopodium quinoa HOM05D005962 ORTHO05D007325 4.1e-58 228.4 170 68.2
FvH4_6g32730 Fragaria vesca HOM05D005962 ORTHO05D007325 4.1e-58 228.4 171 69.6
unitig_32.g10986 Utricularia gibba HOM05D005962 ORTHO05D007325 9.2e-58 227.3 172 69.2
FAN05G1114 Fragaria x ananassa HOM05D005962 ORTHO05D007325 2.7e-57 225.7 171 68.4
AL3G35400 Arabidopsis lyrata HOM05D005962 ORTHO05D007325 1.0e-56 223.8 171 68.4
FAN02G1749 Fragaria x ananassa HOM05D005962 ORTHO05D007325 2.3e-56 222.6 171 67.3
AUR62018448 Chenopodium quinoa HOM05D005962 ORTHO05D007325 3.9e-56 221.9 170 67.1
Os06g0217500 Oryza sativa ssp. japonica HOM05D005962 ORTHO05D007325 3.9e-56 221.9 167 67.7
Aa31LG8G8050 Aethionema arabicum HOM05D005962 ORTHO05D007325 5.1e-56 221.5 171 67.8
Carub.0003s2138 Capsella rubella HOM05D005962 ORTHO05D007325 1.1e-55 220.3 171 67.8
SHI11207 Sapria himalayana HOM05D005962 ORTHO05D007325 1.9e-55 219.5 172 66.3
Sp3g19410 Schrenkiella parvula HOM05D005962 ORTHO05D007325 7.3e-55 217.6 171 66.1
Thhalv10021373m.g Eutrema salsugineum HOM05D005962 ORTHO05D007325 1.2e-54 216.9 171 67.3
FAN09G1055 Fragaria x ananassa HOM05D005962 ORTHO05D007325 1.6e-54 216.5 171 66.1
Zm00001eb372970 Zea mays HOM05D005962 ORTHO05D007325 4.7e-54 214.9 167 67.1
AT3G21350 Arabidopsis thaliana HOM05D005962 ORTHO05D007325 3.1e-53 212.2 171 67.8
THA.LOC104805924 Tarenaya hassleriana HOM05D005962 ORTHO05D007325 8.9e-53 210.7 171 65.5
CARHR097270 Cardamine hirsuta HOM05D005962 ORTHO05D007325 3.4e-52 208.8 171 65.5
BcaB06g26231 Brassica carinata HOM05D005962 ORTHO05D007325 3.7e-51 205.3 171 62.6
Solyc03g121210.4 Solanum lycopersicum HOM05D005962 ORTHO05D007325 3.7e-51 205.3 131 78.6
A05p27250 Brassica napus HOM05D005962 ORTHO05D007325 6.4e-51 204.5 171 63.2
BcaC05g28175 Brassica carinata HOM05D005962 ORTHO05D007325 4.1e-50 201.8 171 62.0
C05p42110 Brassica napus HOM05D005962 ORTHO05D007325 4.1e-50 201.8 171 62.0
SGA_v2.0_scaffold45G16998 Striga asiatica HOM05D005962 ORTHO05D007325 2.1e-49 199.5 118 81.4
BraA05t21615Z Brassica rapa HOM05D005962 ORTHO05D007325 1.7e-48 196.4 181 59.7
Gohir.A01G226000 Gossypium hirsutum HOM05D005962 ORTHO05D007325 3.0e-48 195.7 117 85.5
BolC5t32941H Brassica oleracea HOM05D005962 ORTHO05D007325 1.5e-44 183.3 208 51.0
Medtr0361s0030 Medicago truncatula HOM05D005962 ORTHO05D007325 1.8e-37 159.8 102 76.5
QL05p018100 Quercus lobata HOM05D005962 ORTHO05D007325 2.4e-34 149.4 93 81.7
Cpa.g.sc131.1 Carica papaya HOM05D005962 ORTHO05D007325 5.4e-34 148.3 82 85.4
Migut.I00969 Erythranthe guttata HOM05D005962 ORTHO05D007325 1.6e-33 146.7 80 86.2
Migut.O00801 Erythranthe guttata HOM05D005962 ORTHO05D007325 1.6e-33 146.7 80 86.2
ATR0705G221 Amborella trichopoda HOM05D005962 ORTHO05D007325 2.3e-32 142.9 87 81.6
Mapoly0012s0176 Marchantia polymorpha HOM05D005962 ORTHO05D007325 8.7e-32 141.0 180 48.9
Pp3c11_22580 Physcomitrium patens HOM05D005962 ORTHO05D007325 8.7e-32 141.0 186 49.5
Ah.04g150140 Amaranthus hybridus HOM05D005962 ORTHO05D007325 1.3e-30 137.1 80 80.0
AagrBONN_evm.TU.Sc2ySwM_362.1658 Anthoceros agrestis HOM05D005962 ORTHO05D007325 2.8e-30 136.0 124 57.3
SEGI_18792 Sequoiadendron giganteum HOM05D005962 ORTHO05D007325 8.1e-30 134.4 80 77.5
SMO143G0120 Selaginella moellendorffii HOM05D005962 ORTHO05D007325 1.7e-27 126.7 128 53.1
TAR624G0741 Trochodendron aralioides HOM05D005962 ORTHO05D007325 2.1e-25 119.8 145 51.0
Lj3g0016976 Lotus japonicus HOM05D005962 ORTHO05D007325 6.0e-25 118.2 84 76.2
Ah.04g150130 Amaranthus hybridus HOM05D000535 ORTHO05D000427 2.8e-22 109.4 90 61.1
CBR_g22489 Chara braunii HOM05D005962 ORTHO05D007325 2.8e-22 109.4 166 42.8
RcHm_v2.0_Chr5g0064381 Rosa chinensis HOM05D005962 ORTHO05D007325 6.2e-22 108.2 90 57.8
TAR623G1541 Trochodendron aralioides HOM05D005962 ORTHO05D007325 2.4e-21 106.3 57 89.5
Zm00001eb084330 Zea mays HOM05D005962 ORTHO05D007325 1.9e-15 86.7 57 71.9
Zm00001eb192830 Zea mays HOM05D005962 ORTHO05D007325 9.6e-15 84.3 57 68.4
Cpa.g.c26718.1 Carica papaya HOM05D005962 ORTHO05D007325 2.9e-11 72.8 52 69.2
BraA09t39590Z Brassica rapa HOM05D002393 ORTHO05D002845 8.4e-11 71.2 64 57.8
Dinv30416 Davidia involucrata HOM05D005962 ORTHO05D007325 7.1e-10 68.2 47 76.6
Dinv30417 Davidia involucrata HOM05D000106 ORTHO05D000160 3.3e-07 59.3 60 56.7
PRCOL_00006676 Prasinoderma coloniale HOM05D001184 ORTHO05D008450 2.2e-06 56.6 65 41.5


User provided reference genes

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