Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa018872 Carpinus fangiana HOM05D006589 ORTHO05D008350 0.0e+00 1340.5 684 100.0
Haze_07256 Corylus avellana HOM05D006589 ORTHO05D008350 0.0e+00 1285.8 694 94.8
Thecc.03G124600 Theobroma cacao HOM05D006589 ORTHO05D008350 0.0e+00 1087.4 686 79.4
Dinv04849 Davidia involucrata HOM05D006589 ORTHO05D008350 0.0e+00 1080.1 687 79.3
QL10p004744 Quercus lobata HOM05D006589 ORTHO05D008350 0.0e+00 1078.9 695 80.0
Prupe.5G155500 Prunus persica HOM05D006589 ORTHO05D008350 0.0e+00 1077.8 688 79.5
COL.COLO4_16830 Corchorus olitorius HOM05D006589 ORTHO05D008350 5.6e-311 1070.5 687 79.3
Gohir.D07G057600 Gossypium hirsutum HOM05D006589 ORTHO05D008350 1.2e-310 1069.3 689 79.0
Gohir.A07G053200 Gossypium hirsutum HOM05D006589 ORTHO05D008350 1.9e-308 1062.0 689 77.6
CSS0007976 Camellia sinensis var. sinensis HOM05D006589 ORTHO05D008350 2.1e-307 1058.5 686 78.1
Gorai.001G061100 Gossypium raimondii HOM05D006589 ORTHO05D008350 3.7e-307 1057.7 691 79.2
CsaV3_1G000740 Cucumis sativus L. HOM05D006589 ORTHO05D008350 5.3e-306 1053.9 688 76.9
CANSAT80G0035 Cannabis sativa HOM05D006589 ORTHO05D008350 1.9e-300 1035.4 690 75.4
RcHm_v2.0_Chr7g0190801 Rosa chinensis HOM05D006589 ORTHO05D008350 9.7e-300 1033.1 692 76.7
MD14G1162400 Malus domestica HOM05D006589 ORTHO05D008350 6.3e-299 1030.4 689 76.3
Actinidia36794 Actinidia chinensis HOM05D006589 ORTHO05D008350 1.4e-298 1029.2 692 75.7
Manes.14G054400 Manihot esculenta HOM05D006589 ORTHO05D008350 2.4e-298 1028.5 687 76.0
Eucgr.B00143 Eucalyptus grandis HOM05D006589 ORTHO05D008350 4.1e-298 1027.7 654 77.8
FvH4_5g07670 Fragaria vesca HOM05D006589 ORTHO05D008350 9.0e-298 1026.5 691 74.5
Atru.chr9.1023 Acer truncatum HOM05D006589 ORTHO05D008350 1.7e-296 1022.3 625 79.7
Ciclev10019152m.g Citrus clementina HOM05D006589 ORTHO05D008350 1.7e-296 1022.3 686 77.7
FAN18G3475 Fragaria x ananassa HOM05D006589 ORTHO05D008350 5.0e-296 1020.8 691 74.2
Sabra15G0113500 Salix brachista HOM05D006589 ORTHO05D008350 6.5e-296 1020.4 683 74.4
Potri.015G091700 Populus trichocarpa HOM05D006589 ORTHO05D008350 8.5e-296 1020.0 683 75.1
FAN08G0518 Fragaria x ananassa HOM05D006589 ORTHO05D008350 3.2e-295 1018.1 691 74.1
PGR083G2113 Punica granatum HOM05D006589 ORTHO05D008350 1.2e-294 1016.1 691 74.8
THA.LOC104798952 Tarenaya hassleriana HOM05D006589 ORTHO05D008350 1.6e-294 1015.8 697 73.2
FAN04G1748 Fragaria x ananassa HOM05D006589 ORTHO05D008350 4.6e-294 1014.2 688 74.6
FAN13G0522 Fragaria x ananassa HOM05D006589 ORTHO05D008350 7.9e-294 1013.4 691 74.1
TAR622G1334 Trochodendron aralioides HOM05D006589 ORTHO05D008350 1.4e-293 1012.7 687 75.4
Sed0022036 Sechium edule HOM05D006589 ORTHO05D008350 3.9e-293 1011.1 687 75.8
Nn4g22414 Nelumbo nucifera HOM05D006589 ORTHO05D008350 7.4e-292 1006.9 691 74.7
Sc22g0004160 Simmondsia chinensis HOM05D006589 ORTHO05D008350 1.7e-291 1005.7 685 76.9
Glyma.04G193700 Glycine max HOM05D006589 ORTHO05D008350 9.1e-290 1000.0 685 72.7
ClCG06G017720 Citrullus lanatus HOM05D006589 ORTHO05D008350 4.5e-289 997.7 686 74.6
Ca_15262_v3 Cicer arietinum L. HOM05D006589 ORTHO05D008350 6.5e-288 993.8 686 73.0
Nitab4.5_0005327g0070 Nicotiana tabacum HOM05D006589 ORTHO05D008350 1.1e-287 993.0 692 73.6
TWI23G0930 Tripterygium wilfordii HOM05D006589 ORTHO05D008350 1.4e-287 992.6 685 72.3
Duzib205G1155 Durio zibethinus HOM05D006589 ORTHO05D008350 3.2e-287 991.5 690 74.8
Peaxi162Scf00089g00326 Petunia axillaris HOM05D006589 ORTHO05D008350 1.2e-286 989.6 691 74.8
Glyma.06G172400 Glycine max HOM05D006589 ORTHO05D008350 1.0e-285 986.5 685 74.0
EL10As4g23464 Beta vulgaris HOM05D006589 ORTHO05D008350 1.4e-285 986.1 688 70.6
Lj1g0010015 Lotus japonicus HOM05D006589 ORTHO05D008350 1.4e-285 986.1 690 72.5
Nitab4.5_0001664g0100 Nicotiana tabacum HOM05D006589 ORTHO05D008350 2.0e-284 982.2 692 73.6
arahy.Tifrunner.gnm1.ann1.DGQ22E Arachis hypogaea HOM05D006589 ORTHO05D008350 2.6e-284 981.9 693 72.7
Medtr3g075050 Medicago truncatula HOM05D006589 ORTHO05D008350 3.3e-284 981.5 686 71.6
arahy.Tifrunner.gnm1.ann1.RTQA9M Arachis hypogaea HOM05D006589 ORTHO05D008350 7.4e-284 980.3 693 72.4
Cpa.g.sc4.99 Carica papaya HOM05D006589 ORTHO05D008350 1.3e-283 979.5 694 72.8
Aqoxy5G03523 Aquilegia oxysepala HOM05D006589 ORTHO05D008350 1.8e-282 975.7 686 72.3
Aa31LG4G17110 Aethionema arabicum HOM05D006589 ORTHO05D008350 2.4e-282 975.3 666 73.4
Psat5g140160 Pisum sativum HOM05D006589 ORTHO05D008350 2.0e-281 972.2 689 71.1
CARHR157250 Cardamine hirsuta HOM05D006589 ORTHO05D008350 5.9e-281 970.7 685 72.1
Solyc03g111050.3 Solanum lycopersicum HOM05D006589 ORTHO05D008350 2.9e-280 968.4 689 72.9
PGSC0003DMG400015251 Solanum tuberosum HOM05D006589 ORTHO05D008350 8.5e-280 966.8 689 72.3
Thhalv10010171m.g Eutrema salsugineum HOM05D006589 ORTHO05D008350 1.1e-279 966.5 679 72.6
AL5G27930 Arabidopsis lyrata HOM05D006589 ORTHO05D008350 1.5e-279 966.1 684 71.5
Sopen03g030220 Solanum pennellii HOM05D006589 ORTHO05D008350 4.2e-279 964.5 686 72.7
BcaB05g23014 Brassica carinata HOM05D006589 ORTHO05D008350 4.7e-278 961.1 678 71.1
BraA01t02452Z Brassica rapa HOM05D006589 ORTHO05D008350 4.7e-278 961.1 679 71.4
BcaC09g49867 Brassica carinata HOM05D006589 ORTHO05D008350 8.0e-278 960.3 680 71.3
Sp5g13530 Schrenkiella parvula HOM05D006589 ORTHO05D008350 1.0e-277 959.9 678 70.5
BolC1t03137H Brassica oleracea HOM05D006589 ORTHO05D008350 1.8e-277 959.1 680 71.2
A01p25610 Brassica napus HOM05D006589 ORTHO05D008350 2.3e-277 958.7 679 71.3
Carub.0005s1468 Capsella rubella HOM05D006589 ORTHO05D008350 3.0e-277 958.4 686 71.0
C01p32170 Brassica napus HOM05D006589 ORTHO05D008350 5.2e-277 957.6 680 71.0
Phvul.009G168200 Phaseolus vulgaris HOM05D006589 ORTHO05D008350 7.4e-276 953.7 686 71.0
Lalb_Chr11g0069681 Lupinus albus HOM05D006589 ORTHO05D008350 2.8e-275 951.8 692 71.4
Lj5A99T74 Lonicera japonica HOM05D006589 ORTHO05D008350 1.1e-274 949.9 711 70.2
TPR.G26148 Trifolium pratense HOM05D006589 ORTHO05D008350 1.4e-274 949.5 698 68.8
SalBow5G1883 Salvia bowleyana HOM05D006589 ORTHO05D008350 1.8e-274 949.1 659 73.7
PSO063G3222 Papaver somniferum HOM05D006589 ORTHO05D008350 9.1e-274 946.8 671 74.1
Migut.I00491 Erythranthe guttata HOM05D006589 ORTHO05D008350 1.2e-273 946.4 694 71.2
Hund02417 Selenicereus undatus HOM05D006589 ORTHO05D008350 5.9e-273 944.1 623 73.8
SalBow5G0933 Salvia bowleyana HOM05D006589 ORTHO05D008350 2.2e-272 942.2 660 73.6
PSO782G1921 Papaver somniferum HOM05D006589 ORTHO05D008350 1.1e-271 939.9 662 72.4
DCAR_007473 Daucus carota HOM05D006589 ORTHO05D008350 8.8e-269 930.2 673 70.0
Lsat_1_v5_gn_5_13320 Lactuca sativa HOM05D006589 ORTHO05D008350 7.7e-265 917.1 687 66.1
HanXRQChr05g0158451 Helianthus annuus HOM05D006589 ORTHO05D008350 1.5e-263 912.9 684 66.5
AT3G48500 Arabidopsis thaliana HOM05D006589 ORTHO05D008350 2.5e-263 912.1 684 68.7
CDE02G2664 Ceratophyllum demersum HOM05D006589 ORTHO05D008350 2.3e-261 905.6 652 71.3
GSVIVG01008490001 Vitis vinifera HOM05D006589 ORTHO05D008350 1.1e-255 886.7 560 80.2
ECA246G1540 Erigeron canadensis HOM05D006589 ORTHO05D008350 2.5e-255 885.6 619 69.3
MELO3C026221.2 Cucumis melo HOM05D006589 ORTHO05D008350 8.9e-253 877.1 809 60.0
Rhsim12G0172500 Rhododendron simsii HOM05D006589 ORTHO05D008350 7.0e-250 867.5 645 68.2
MBI08_g33782_MAGBIO Magnolia biondii HOM05D006589 ORTHO05D008350 9.2e-250 867.1 668 67.8
Cc04_g10160 Coffea canephora HOM05D006589 ORTHO05D008350 1.3e-248 863.2 562 78.3
CAN.G352.47 Capsicum annuum HOM05D006589 ORTHO05D008350 9.5e-247 857.1 561 76.5
AUR62029828 Chenopodium quinoa HOM05D006589 ORTHO05D008350 9.8e-244 847.0 559 73.0
AUR62025863 Chenopodium quinoa HOM05D006589 ORTHO05D008350 6.4e-243 844.3 685 64.4
HPP92_003572 Vanilla planifolia HOM05D006589 ORTHO05D008350 1.3e-235 820.1 588 66.5
Ah.02g115320 Amaranthus hybridus HOM05D006589 ORTHO05D008350 4.1e-234 815.1 692 63.3
vmacro16654 Vaccinium macrocarpon HOM05D006589 ORTHO05D008350 7.1e-234 814.3 770 56.6
CiPaw.12G036500 Carya illinoinensis HOM05D006589 ORTHO05D008350 2.1e-233 812.8 472 85.6
SGA_v2.0_scaffold161G37820 Striga asiatica HOM05D006589 ORTHO05D008350 2.2e-219 766.1 581 67.8
Zm00001eb365570 Zea mays HOM05D006589 ORTHO05D008350 2.7e-201 706.1 577 60.1
vmacro16714 Vaccinium macrocarpon HOM05D006589 ORTHO05D008350 5.5e-194 681.8 790 49.2
Oeu006374.4 Olea europaea HOM05D006589 ORTHO05D000550 3.3e-167 592.8 433 67.7
unitig_0.g1070 Utricularia gibba HOM05D006589 ORTHO05D008350 1.2e-145 521.2 380 70.0
Os01g0901900 Oryza sativa ssp. japonica HOM05D006589 ORTHO05D008350 5.7e-143 512.3 444 58.3
Mapoly0120s0021 Marchantia polymorpha HOM05D006589 ORTHO05D008350 1.0e-128 464.9 529 47.4
Pp3c18_13570 Physcomitrium patens HOM05D006589 ORTHO05D008350 7.8e-116 422.2 588 43.7
ATR0060G001 Amborella trichopoda HOM05D006589 ORTHO05D008350 1.7e-115 421.0 351 63.8
Ca_15265_v3 Cicer arietinum L. HOM05D006589 ORTHO05D008350 1.9e-109 401.0 281 69.8
FAN21G1369 Fragaria x ananassa HOM05D006589 ORTHO05D008350 6.4e-102 375.9 335 59.4
FAN21G3066 Fragaria x ananassa HOM05D006589 ORTHO05D008350 6.4e-102 375.9 335 59.4
unitig_0.g1069 Utricularia gibba HOM05D006589 ORTHO05D008350 1.6e-97 361.3 276 64.5
SMO356G0597 Selaginella moellendorffii HOM05D006589 ORTHO05D008350 2.1e-89 334.3 569 37.3
RcHm_v2.0_Chr1g0380381 Rosa chinensis HOM05D006589 ORTHO05D008350 3.0e-83 313.9 252 67.1
ATR0686G112 Amborella trichopoda HOM05D006589 ORTHO05D008350 2.1e-81 307.8 279 56.6
CBR_g31403 Chara braunii HOM05D006589 ORTHO05D008350 1.1e-58 232.3 573 29.3
HPP92_003575 Vanilla planifolia HOM05D006589 ORTHO05D008350 6.9e-56 223.0 218 53.7
SEGI_40144 Sequoiadendron giganteum HOM05D006589 ORTHO05D008350 5.5e-53 213.4 270 44.8
CDE09G0508 Ceratophyllum demersum HOM05D006589 ORTHO05D008350 4.4e-42 177.2 180 50.0
FAN25G1587 Fragaria x ananassa HOM05D006589 ORTHO05D008350 4.8e-41 173.7 151 63.6
arahy.Tifrunner.gnm1.ann1.85RMBE Arachis hypogaea HOM05D006589 ORTHO05D008350 1.2e-34 152.5 146 55.5
arahy.Tifrunner.gnm1.ann1.Q1JBFY Arachis hypogaea HOM05D006589 ORTHO05D008350 1.3e-33 149.1 124 59.7
MCO14G318 Micromonas commoda HOM05D006589 ORTHO05D008350 9.8e-10 69.7 123 36.6
Cre07.g348500 Chlamydomonas reinhardtii HOM05D006589 ORTHO05D008350 2.0e-07 62.0 115 31.3


User provided reference genes

Program Settings