Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa018712 Carpinus fangiana HOM05D004329 ORTHO05D005516 0.0e+00 1165.6 601 100.0
Haze_07104 Corylus avellana HOM05D004329 ORTHO05D005516 0.0e+00 1142.9 625 95.0
QL10p000650 Quercus lobata HOM05D004329 ORTHO05D005516 9.0e-310 1066.2 590 92.9
Duzib205G0720 Durio zibethinus HOM05D004329 ORTHO05D005516 1.9e-299 1031.9 602 87.7
Atru.chr6.1908 Acer truncatum HOM05D004329 ORTHO05D005516 9.4e-299 1029.6 601 87.4
Thecc.03G139600 Theobroma cacao HOM05D004329 ORTHO05D005516 7.9e-298 1026.5 602 87.7
CANSAT80G0741 Cannabis sativa HOM05D004329 ORTHO05D005516 5.3e-294 1013.8 594 86.2
CANSAT80G0883 Cannabis sativa HOM05D004329 ORTHO05D005516 7.0e-294 1013.4 593 86.3
CiPaw.09G139600 Carya illinoinensis HOM05D004329 ORTHO05D005516 9.1e-294 1013.1 568 90.5
Gohir.D07G051400 Gossypium hirsutum HOM05D004329 ORTHO05D005516 9.1e-294 1013.1 600 86.0
Gohir.A07G047200 Gossypium hirsutum HOM05D004329 ORTHO05D005516 2.0e-293 1011.9 606 85.3
Gorai.001G054500 Gossypium raimondii HOM05D004329 ORTHO05D005516 2.0e-293 1011.9 614 84.2
TWI39G0623 Tripterygium wilfordii HOM05D004329 ORTHO05D005516 1.7e-292 1008.8 600 85.2
Prupe.5G142700 Prunus persica HOM05D004329 ORTHO05D005516 7.2e-291 1003.4 601 85.2
TAR374G0799 Trochodendron aralioides HOM05D004329 ORTHO05D005516 1.2e-290 1002.7 602 85.5
Ciclev10031005m.g Citrus clementina HOM05D004329 ORTHO05D005516 3.0e-289 998.0 602 85.2
MD14G1148000 Malus domestica HOM05D004329 ORTHO05D005516 3.3e-288 994.6 601 84.0
CSS0022050 Camellia sinensis var. sinensis HOM05D004329 ORTHO05D005516 3.7e-287 991.1 603 84.6
vmacro19178 Vaccinium macrocarpon HOM05D004329 ORTHO05D005516 1.8e-286 988.8 603 83.9
Actinidia18306 Actinidia chinensis HOM05D004329 ORTHO05D005516 4.1e-286 987.6 603 83.3
Potri.015G105600 Populus trichocarpa HOM05D004329 ORTHO05D005516 4.1e-286 987.6 602 83.6
ClCG03G012650 Citrullus lanatus HOM05D004329 ORTHO05D005516 9.1e-286 986.5 593 84.5
Dinv23217 Davidia involucrata HOM05D004329 ORTHO05D005516 1.6e-285 985.7 601 83.7
Sed0013101 Sechium edule HOM05D004329 ORTHO05D005516 3.5e-285 984.6 592 84.3
CsaV3_1G043340 Cucumis sativus L. HOM05D004329 ORTHO05D005516 1.3e-284 982.6 593 84.1
RcHm_v2.0_Chr7g0188791 Rosa chinensis HOM05D004329 ORTHO05D005516 2.2e-284 981.9 603 83.3
Potri.012G106200 Populus trichocarpa HOM05D004329 ORTHO05D005516 3.2e-283 978.0 602 82.9
Hma1.2p1_0493F.1_g164990 Hydrangea macrophylla HOM05D004329 ORTHO05D005516 4.2e-283 977.6 600 83.5
PGR083G0006 Punica granatum HOM05D004329 ORTHO05D005516 7.2e-283 976.9 593 84.0
MELO3C015126.2 Cucumis melo HOM05D004329 ORTHO05D005516 9.4e-283 976.5 593 83.6
MD06G1131700 Malus domestica HOM05D004329 ORTHO05D005516 1.2e-282 976.1 592 83.8
Manes.06G126200 Manihot esculenta HOM05D004329 ORTHO05D005516 2.7e-282 974.9 602 82.4
Rhsim08G0196600 Rhododendron simsii HOM05D004329 ORTHO05D005516 2.7e-282 974.9 603 83.1
Nn4g22142 Nelumbo nucifera HOM05D004329 ORTHO05D005516 4.7e-282 974.2 598 83.3
Actinidia36840 Actinidia chinensis HOM05D004329 ORTHO05D005516 8.0e-282 973.4 603 81.9
COL.COLO4_37247 Corchorus olitorius HOM05D004329 ORTHO05D005516 1.8e-281 972.2 622 82.2
FAN18G1836 Fragaria x ananassa HOM05D004329 ORTHO05D005516 1.8e-281 972.2 607 82.7
FAN13G1968 Fragaria x ananassa HOM05D004329 ORTHO05D005516 1.2e-280 969.5 618 81.6
GSVIVG01008641001 Vitis vinifera HOM05D004329 ORTHO05D005516 2.6e-280 968.4 602 82.9
vmacro06162 Vaccinium macrocarpon HOM05D004329 ORTHO05D005516 3.4e-280 968.0 603 82.3
FvH4_5g09400 Fragaria vesca HOM05D004329 ORTHO05D005516 4.4e-280 967.6 605 82.5
Sed0023904 Sechium edule HOM05D004329 ORTHO05D005516 4.4e-280 967.6 595 82.9
Sc22g0003470 Simmondsia chinensis HOM05D004329 ORTHO05D005516 2.0e-277 958.7 600 81.5
VMungo0251G1423 Vigna mungo HOM05D004329 ORTHO05D005516 3.5e-277 958.0 603 80.8
MSTRG.22850 Avicennia marina HOM05D004329 ORTHO05D005516 1.0e-276 956.4 603 80.9
EL10Ac7g17942 Beta vulgaris HOM05D004329 ORTHO05D005516 1.3e-276 956.1 603 82.4
Sabra15G0125900 Salix brachista HOM05D004329 ORTHO05D005516 2.2e-276 955.3 650 76.8
Eucgr.F03808 Eucalyptus grandis HOM05D004329 ORTHO05D005516 2.9e-276 954.9 596 81.4
Medtr8g100110 Medicago truncatula HOM05D004329 ORTHO05D005516 1.9e-275 952.2 603 80.1
Lj4g0026438 Lotus japonicus HOM05D004329 ORTHO05D005516 2.5e-275 951.8 603 80.8
Phvul.002G282000 Phaseolus vulgaris HOM05D004329 ORTHO05D005516 3.2e-275 951.4 603 80.3
Sopen03g024820 Solanum pennellii HOM05D004329 ORTHO05D005516 3.2e-275 951.4 601 80.5
TPR.G12807 Trifolium pratense HOM05D004329 ORTHO05D005516 2.7e-274 948.3 603 80.1
Ca_16811_v3 Cicer arietinum L. HOM05D004329 ORTHO05D005516 3.6e-274 948.0 603 80.1
Solyc03g093970.3 Solanum lycopersicum HOM05D004329 ORTHO05D005516 6.1e-274 947.2 601 80.4
Glyma.05G200600 Glycine max HOM05D004329 ORTHO05D005516 1.4e-273 946.0 603 80.3
Aqoxy4G00231 Aquilegia oxysepala HOM05D004329 ORTHO05D005516 2.3e-273 945.3 602 80.9
Lalb_Chr07g0183781 Lupinus albus HOM05D004329 ORTHO05D005516 3.4e-272 941.4 594 81.1
Psat7g039240 Pisum sativum HOM05D004329 ORTHO05D005516 3.4e-272 941.4 603 79.3
CAN.G1210.1 Capsicum annuum HOM05D004329 ORTHO05D005516 4.4e-272 941.0 601 80.0
Solyc02g062810.4 Solanum lycopersicum HOM05D004329 ORTHO05D005516 9.8e-272 939.9 601 79.9
Sopen02g013850 Solanum pennellii HOM05D004329 ORTHO05D005516 9.8e-272 939.9 601 79.5
Nitab4.5_0007718g0050 Nicotiana tabacum HOM05D004329 ORTHO05D005516 3.7e-271 937.9 602 79.6
Sabra12G0078600 Salix brachista HOM05D004329 ORTHO05D005516 3.7e-271 937.9 683 73.1
Migut.I00617 Erythranthe guttata HOM05D004329 ORTHO05D005516 3.5e-269 931.4 603 79.1
Thhalv10003854m.g Eutrema salsugineum HOM05D004329 ORTHO05D005516 4.5e-269 931.0 600 79.0
THA.LOC104819422 Tarenaya hassleriana HOM05D004329 ORTHO05D005516 5.9e-269 930.6 600 79.0
FAN04G0329 Fragaria x ananassa HOM05D004329 ORTHO05D005516 7.7e-269 930.2 601 81.4
Aa31LG11G1550 Aethionema arabicum HOM05D004329 ORTHO05D005516 1.3e-268 929.5 598 78.3
THA.LOC104823903 Tarenaya hassleriana HOM05D004329 ORTHO05D005516 1.3e-268 929.5 600 79.0
Lj5A87T69 Lonicera japonica HOM05D004329 ORTHO05D005516 2.3e-268 928.7 578 82.4
AL8G38730 Arabidopsis lyrata HOM05D004329 ORTHO05D005516 2.9e-268 928.3 598 78.9
Sp2g25150 Schrenkiella parvula HOM05D004329 ORTHO05D005516 5.0e-268 927.5 598 78.8
AT5G61970 Arabidopsis thaliana HOM05D004329 ORTHO05D005516 1.5e-267 926.0 603 79.3
arahy.Tifrunner.gnm1.ann1.IBL9WM Arachis hypogaea HOM05D004329 ORTHO05D005516 1.9e-267 925.6 599 79.3
Lsat_1_v5_gn_4_84600 Lactuca sativa HOM05D004329 ORTHO05D005516 4.3e-267 924.5 604 80.0
Oeu012844.2 Olea europaea HOM05D004329 ORTHO05D005516 9.5e-267 923.3 659 73.3
arahy.Tifrunner.gnm1.ann1.HJ5J7F Arachis hypogaea HOM05D004329 ORTHO05D005516 2.8e-266 921.8 596 79.4
ECA232G2772 Erigeron canadensis HOM05D004329 ORTHO05D005516 2.8e-266 921.8 598 78.9
BcaB02g09609 Brassica carinata HOM05D004329 ORTHO05D005516 3.6e-266 921.4 598 77.9
SGA_v2.0_scaffold74G24730 Striga asiatica HOM05D004329 ORTHO05D005516 6.1e-266 920.6 622 76.2
BraA02t09122Z Brassica rapa HOM05D004329 ORTHO05D005516 3.0e-265 918.3 599 77.6
Peaxi162Scf00935g00018 Petunia axillaris HOM05D004329 ORTHO05D005516 4.0e-265 917.9 603 78.3
A06p28670 Brassica napus HOM05D004329 ORTHO05D005516 5.2e-265 917.5 598 77.4
Carub.0008s2266 Capsella rubella HOM05D004329 ORTHO05D005516 8.9e-265 916.8 596 78.2
BraA06t25807Z Brassica rapa HOM05D004329 ORTHO05D005516 1.2e-264 916.4 598 77.3
BolC2t12235H Brassica oleracea HOM05D004329 ORTHO05D005516 3.4e-264 914.8 594 77.6
BcaC01g02451 Brassica carinata HOM05D004329 ORTHO05D005516 9.8e-264 913.3 598 77.1
C03p65130 Brassica napus HOM05D004329 ORTHO05D005516 9.8e-264 913.3 598 77.1
BolC3t18767H Brassica oleracea HOM05D004329 ORTHO05D005516 9.8e-264 913.3 598 77.1
HanXRQChr09g0273891 Helianthus annuus HOM05D004329 ORTHO05D005516 4.1e-262 907.9 602 77.7
Dinv13728 Davidia involucrata HOM05D004329 ORTHO05D005516 1.2e-261 906.4 570 81.9
Actinidia08906 Actinidia chinensis HOM05D000877 ORTHO05D001509 4.6e-261 904.4 553 83.2
Carub.0005s0295 Capsella rubella HOM05D004329 ORTHO05D005516 4.6e-261 904.4 598 77.4
ATR1096G004 Amborella trichopoda HOM05D004329 ORTHO05D005516 3.3e-259 898.3 601 75.2
FAN08G1859 Fragaria x ananassa HOM05D004329 ORTHO05D005516 4.3e-259 897.9 570 82.3
Glyma.08G008000 Glycine max HOM05D004329 ORTHO05D005516 1.2e-258 896.3 563 81.3
Cpa.g.sc13.162 Carica papaya HOM05D004329 ORTHO05D005516 3.4e-256 888.3 595 78.7
Hund02504 Selenicereus undatus HOM05D004329 ORTHO05D005516 4.9e-255 884.4 550 82.7
BcaB07g29807 Brassica carinata HOM05D004329 ORTHO05D005516 1.2e-253 879.8 626 73.2
PSO017G7154 Papaver somniferum HOM05D004329 ORTHO05D005516 7.8e-253 877.1 600 74.7
PSO478G2811 Papaver somniferum HOM05D004329 ORTHO05D005516 7.8e-253 877.1 600 74.8
DCAR_016350 Daucus carota HOM05D004329 ORTHO05D005516 3.6e-250 868.2 548 80.5
AUR62009528 Chenopodium quinoa HOM05D004329 ORTHO05D005516 3.2e-246 855.1 586 76.8
AUR62041693 Chenopodium quinoa HOM05D004329 ORTHO05D005516 6.6e-244 847.4 586 76.1
SGA_v2.0_scaffold40G15626 Striga asiatica HOM05D004329 ORTHO05D005516 1.6e-242 842.8 614 71.7
SalBow1G7365 Salvia bowleyana HOM05D004329 ORTHO05D005516 7.8e-237 823.9 640 69.4
unitig_32.g11043 Utricularia gibba HOM05D004329 ORTHO05D005516 1.6e-234 816.2 657 64.8
MBI13_g15007_MAGBIO Magnolia biondii HOM05D004329 ORTHO05D005516 3.1e-233 812.0 504 81.9
Manes.14G045200 Manihot esculenta HOM05D004329 ORTHO05D005516 8.9e-233 810.4 479 86.4
PSO081G0143 Papaver somniferum HOM05D004329 ORTHO05D005516 4.4e-232 808.1 600 70.3
PGSC0003DMG400015501 Solanum tuberosum HOM05D004329 ORTHO05D005516 1.4e-225 786.6 494 80.2
SEGI_15405 Sequoiadendron giganteum HOM05D004329 ORTHO05D005516 5.3e-225 784.6 598 67.4
CDE04G3457 Ceratophyllum demersum HOM05D004329 ORTHO05D005516 4.5e-224 781.6 601 68.7
CARHR275760 Cardamine hirsuta HOM05D004329 ORTHO05D005516 1.7e-223 779.6 477 82.0
Zm00001eb327290 Zea mays HOM05D004329 ORTHO05D005516 1.6e-218 763.1 594 66.2
AUR62044173 Chenopodium quinoa HOM05D004329 ORTHO05D005516 1.3e-204 716.8 547 70.7
C02p61780 Brassica napus HOM05D004329 ORTHO05D005516 9.3e-198 694.1 427 81.0
MBI13_g43178_MAGBIO Magnolia biondii HOM05D004329 ORTHO05D005516 6.7e-196 688.0 504 72.4
Cc09_g07950 Coffea canephora HOM05D004329 ORTHO05D005516 1.5e-192 676.8 442 79.4
AagrBONN_evm.TU.Sc2ySwM_228.1186 Anthoceros agrestis HOM05D004329 ORTHO05D005516 1.8e-180 636.7 608 55.9
Mapoly0153s0017 Marchantia polymorpha HOM05D004329 ORTHO05D005516 8.2e-170 601.3 600 53.0
Pp3c15_22190 Physcomitrium patens HOM05D004329 ORTHO05D005516 3.5e-168 595.9 585 52.6
Os08g0323000 Oryza sativa ssp. japonica HOM05D004329 ORTHO05D005516 5.0e-159 565.5 436 67.0
Ah.11g046840 Amaranthus hybridus HOM05D004329 ORTHO05D005516 4.1e-153 545.8 336 83.3
A02p41850 Brassica napus HOM05D004329 ORTHO05D005516 4.0e-148 529.3 367 75.2
HPP92_028710 Vanilla planifolia HOM05D004329 ORTHO05D005516 1.0e-143 514.6 418 64.8
CBR_g20988 Chara braunii HOM05D004329 ORTHO05D005516 5.6e-142 508.8 605 47.1
FAN18G2676 Fragaria x ananassa HOM05D004329 ORTHO05D005516 4.0e-140 502.7 531 55.9
SMO356G0738 Selaginella moellendorffii HOM05D004329 ORTHO05D005516 1.5e-134 484.2 575 46.6
Nitab4.5_0009429g0030 Nicotiana tabacum HOM05D004329 ORTHO05D005516 5.8e-131 472.2 288 83.7
Nitab4.5_0017885g0010 Nicotiana tabacum HOM05D004329 ORTHO05D005516 1.6e-128 464.2 332 72.6
CDE07G0688 Ceratophyllum demersum HOM05D004329 ORTHO05D005516 2.5e-118 430.3 248 84.7
Cc00_g30130 Coffea canephora HOM05D004329 ORTHO05D005516 4.2e-113 412.9 281 77.6
Aqoxy5G01090 Aquilegia oxysepala HOM05D004329 ORTHO05D005516 2.8e-109 400.2 441 52.8
TAR622G0210 Trochodendron aralioides HOM05D004329 ORTHO05D005516 1.5e-99 367.9 318 64.5
CDE07G1247 Ceratophyllum demersum HOM05D004329 ORTHO05D005516 1.7e-90 337.8 272 66.5
Cre06.g267100 Chlamydomonas reinhardtii HOM05D004329 ORTHO05D005516 1.4e-76 291.6 684 32.3
MBI13_g13130_MAGBIO Magnolia biondii HOM05D004329 ORTHO05D005516 1.0e-74 285.4 181 80.1
MCO15G338 Micromonas commoda HOM05D004329 ORTHO05D005516 3.3e-70 270.4 556 33.5
BcaC03g18112 Brassica carinata HOM05D004329 ORTHO05D005516 4.7e-64 250.0 153 79.7
Cc09_g07990 Coffea canephora HOM05D004329 ORTHO05D005516 1.4e-60 238.4 155 78.1
Cc09_g07980 Coffea canephora HOM05D004329 ORTHO05D005516 3.1e-60 237.3 154 79.2
CSS0034501 Camellia sinensis var. sinensis HOM05D004329 ORTHO05D005516 1.4e-47 195.3 147 70.1
CSS0009974 Camellia sinensis var. sinensis HOM05D004329 ORTHO05D005516 1.2e-46 192.2 107 88.8
PRCOL_00003443 Prasinoderma coloniale HOM05D004329 ORTHO05D005516 1.1e-41 175.6 622 27.8
Solyc02g062830.2 Solanum lycopersicum HOM05D004329 ORTHO05D005516 4.3e-33 147.1 96 75.0
AagrBONN_evm.TU.Sc2ySwM_228.1280 Anthoceros agrestis HOM05D004329 ORTHO05D005516 1.6e-32 145.2 187 47.1
AagrBONN_evm.TU.Sc2ySwM_228.1281 Anthoceros agrestis HOM05D004329 ORTHO05D005516 8.0e-32 142.9 120 57.5
Haze_22596 Corylus avellana HOM05D004329 ORTHO05D010424 5.2e-31 140.2 74 93.2
C02p61790 Brassica napus HOM05D004329 ORTHO05D005516 4.1e-28 130.6 98 66.3
CARHR275770 Cardamine hirsuta HOM05D004329 ORTHO05D005516 1.1e-25 122.5 99 60.6
Solyc02g062840.1 Solanum lycopersicum HOM05D004329 ORTHO05D005516 1.8e-23 115.2 66 81.8
CAN.G865.5 Capsicum annuum HOM05D004329 ORTHO05D005516 8.3e-21 106.3 67 68.7
Zm00001eb081410 Zea mays HOM05D004902 ORTHO05D006603 9.2e-20 102.8 78 61.5
Cfa027290 Carpinus fangiana HOM05D004329 ORTHO05D121551 3.9e-18 97.4 640 23.0
Lsat_1_v5_gn_5_81961 Lactuca sativa HOM05D004329 ORTHO05D005516 3.6e-16 90.9 49 87.8
Lsat_1_v5_gn_8_114301 Lactuca sativa HOM05D004329 ORTHO05D005516 1.8e-15 88.6 48 87.5
Zm00001eb202340 Zea mays HOM05D004329 ORTHO05D005516 2.0e-14 85.1 71 54.9
Lsat_1_v5_gn_2_122301 Lactuca sativa HOM05D009063 ORTHO05D011082 9.9e-14 82.8 194 33.0
CSS0048280 Camellia sinensis var. sinensis HOM05D004329 ORTHO05D005516 1.7e-13 82.0 94 52.1
Hund31053 Selenicereus undatus HOM05D004329 ORTHO05D026010 1.9e-12 78.6 53 75.5
Hund31064 Selenicereus undatus HOM05D004329 ORTHO05D026010 2.4e-12 78.2 53 75.5
Sopen02g013860 Solanum pennellii HOM05D004329 ORTHO05D026010 7.1e-12 76.6 61 67.2
Solyc04g048930.1 Solanum lycopersicum HOM05D004329 ORTHO05D026010 4.7e-08 63.9 54 61.1
COL.COLO4_03746 Corchorus olitorius HOM05D004329 ORTHO05D155270 2.6e-06 58.2 29 89.7


User provided reference genes

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